메뉴 건너뛰기




Volumn 50, Issue 2, 2004, Pages 79-89

Genetic and phenotypic traits of streptomycetes used to characterize antibiotic activities of field-collected microbes

Author keywords

16S rDNA; Antibiotic inhibition; BOX PCR; Nutrient utilization; Resistance

Indexed keywords

ANTIBIOTICS; BACTERIA; DNA; FREQUENCIES;

EID: 2342548750     PISSN: 00084166     EISSN: None     Source Type: Journal    
DOI: 10.1139/w03-107     Document Type: Article
Times cited : (35)

References (61)
  • 2
    • 0030964940 scopus 로고    scopus 로고
    • Comparison of agar dilution, broth microdilution, disk diffusion, E-test, and BACTEC radiometric methods for antimicrobial susceptibility testing of clinical isolates of the Nocardia asteroids complex
    • Ambaye, A., Kohner, P.C., Wollan, P.C., Roberts, K.L., Roberts, G.D., and Cockerill, F.R., III. 1997. Comparison of agar dilution, broth microdilution, disk diffusion, E-test, and BACTEC radiometric methods for antimicrobial susceptibility testing of clinical isolates of the Nocardia asteroids complex. J. Clin. Microbiol. 35: 847-852.
    • (1997) J. Clin. Microbiol. , vol.35 , pp. 847-852
    • Ambaye, A.1    Kohner, P.C.2    Wollan, P.C.3    Roberts, K.L.4    Roberts, G.D.5    Cockerill III, F.R.6
  • 4
    • 2342609231 scopus 로고    scopus 로고
    • (Northern Michigan University.) Personal communication
    • Becker, D.M. 2001. (Northern Michigan University.) Personal communication.
    • (2001)
    • Becker, D.M.1
  • 5
    • 0036919016 scopus 로고    scopus 로고
    • Protein-protein interactions in pathogen recognition by plants
    • Bogdanove, A.J. 2002. Protein-protein interactions in pathogen recognition by plants. Plant Mol. Biol. 50: 981-989.
    • (2002) Plant Mol. Biol. , vol.50 , pp. 981-989
    • Bogdanove, A.J.1
  • 6
    • 0031739972 scopus 로고    scopus 로고
    • Phenotypic, genotypic and pathogenic variation among streptomycetes implicated in common scab disease
    • Bramwell, PA., Wiener, P., Akkermans, A.D.L., and Wellington, E.M.H. 1998. Phenotypic, genotypic and pathogenic variation among streptomycetes implicated in common scab disease. Lett. Appl. Microbiol. 27: 255-260.
    • (1998) Lett. Appl. Microbiol. , vol.27 , pp. 255-260
    • Bramwell, P.A.1    Wiener, P.2    Akkermans, A.D.L.3    Wellington, E.M.H.4
  • 7
    • 0030499421 scopus 로고    scopus 로고
    • Phenotypic diversity and antibiotic resistance in soil bacterial communities
    • Brønstad, K., Drønen, K., Øvreås, L., and Torsvik, V. 1996. Phenotypic diversity and antibiotic resistance in soil bacterial communities. J. Ind. Microbiol. 17: 253-259.
    • (1996) J. Ind. Microbiol. , vol.17 , pp. 253-259
    • Brønstad, K.1    Drønen, K.2    Øvreås, L.3    Torsvik, V.4
  • 9
    • 0030930388 scopus 로고    scopus 로고
    • Use of rhizosphere carbon sources in sole carbon source tests to discriminate soil microbial communities
    • Campbell, C.D., Grayston, S.J., and Hirst, D.J. 1997. Use of rhizosphere carbon sources in sole carbon source tests to discriminate soil microbial communities. J. Microbiol. Methods, 30: 33-41.
    • (1997) J. Microbiol. Methods , vol.30 , pp. 33-41
    • Campbell, C.D.1    Grayston, S.J.2    Hirst, D.J.3
  • 10
    • 0036233515 scopus 로고    scopus 로고
    • Pathogenic variation in Colletotrichum gloeosporioides infecting Stylosanthes spp. in a center of diversity in Brazil
    • Chakraborty, S., Fernandes, C.D., Charchar, M.J.D., and Thomas, M.R. 2002. Pathogenic variation in Colletotrichum gloeosporioides infecting Stylosanthes spp. in a center of diversity in Brazil. Phytopathology, 92: 553-562.
    • (2002) Phytopathology , vol.92 , pp. 553-562
    • Chakraborty, S.1    Fernandes, C.D.2    Charchar, M.J.D.3    Thomas, M.R.4
  • 11
    • 0013095682 scopus 로고    scopus 로고
    • Actinomycetes, promising tools to control plant diseases and to promote plant growth
    • Doumbou, C.L., Salove, M.K.H., Crawford, D.L., and Beaulieu, C. Actinomycetes, promising tools to control plant diseases and to promote plant growth. Phytoprotection, 82: 85-102.
    • Phytoprotection , vol.82 , pp. 85-102
    • Doumbou, C.L.1    Salove, M.K.H.2    Crawford, D.L.3    Beaulieu, C.4
  • 12
    • 0024444791 scopus 로고
    • Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA
    • Edwards, U., Rogall, T., Blöcker, H., Emde, M., and Böttger, E.C. 1989. Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res. 17: 7843-7853.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 7843-7853
    • Edwards, U.1    Rogall, T.2    Blöcker, H.3    Emde, M.4    Böttger, E.C.5
  • 13
    • 0027880709 scopus 로고
    • Towards the biological control of fungal and bacterial diseases of tomato using antagonistic Streptomyces spp.
    • El-Abyad, M.S., El-Sayed, M.A., El-Shanshoury, A.R., and El-Sabbagh, S.M. 1993. Towards the biological control of fungal and bacterial diseases of tomato using antagonistic Streptomyces spp. Plant Soil, 149: 185-195.
    • (1993) Plant Soil , vol.149 , pp. 185-195
    • El-Abyad, M.S.1    El-Sayed, M.A.2    El-Shanshoury, A.R.3    El-Sabbagh, S.M.4
  • 14
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 15
    • 0019439365 scopus 로고
    • A family of r-determinants in Streptomyces sp. that specifies inducible resistance to macrolide, lincosamide and streptogramin type B antibiotics
    • Fujisawa, Y., and Weisblum, B. 1981. A family of r-determinants in Streptomyces sp. that specifies inducible resistance to macrolide, lincosamide and streptogramin type B antibiotics. J. Bacteriol. 146: 621-631.
    • (1981) J. Bacteriol. , vol.146 , pp. 621-631
    • Fujisawa, Y.1    Weisblum, B.2
  • 16
    • 0029661576 scopus 로고    scopus 로고
    • Analytical approaches to the characterization of samples of microbial communities using patterns of potential C source utilization
    • Garland, J.L. 1996. Analytical approaches to the characterization of samples of microbial communities using patterns of potential C source utilization. Soil Biol. Biochem. 28: 213-221.
    • (1996) Soil Biol. Biochem. , vol.28 , pp. 213-221
    • Garland, J.L.1
  • 17
    • 0032033755 scopus 로고    scopus 로고
    • Selective influence of plant species on microbial diversity in the rhizosphere
    • Grayston, S.J., Wang, S., Campbell, C.D., and Edwards, A.C. 1998. Selective influence of plant species on microbial diversity in the rhizosphere. Soil Biol. Biochem. 30: 369-378.
    • (1998) Soil Biol. Biochem. , vol.30 , pp. 369-378
    • Grayston, S.J.1    Wang, S.2    Campbell, C.D.3    Edwards, A.C.4
  • 18
    • 0027486534 scopus 로고
    • The Pearson product-moment correlation coefficient is better suited for identification of DNA fingerprint profiles than band matching algorithms
    • Häne, B.G., Jäger K., and Drexler, H.G. 1993. The Pearson product-moment correlation coefficient is better suited for identification of DNA fingerprint profiles than band matching algorithms. Electrophoresis, 14: 967-972.
    • (1993) Electrophoresis , vol.14 , pp. 967-972
    • Häne, B.G.1    Jäger, K.2    Drexler, H.G.3
  • 19
    • 0030498342 scopus 로고    scopus 로고
    • Diversity in aminoglycoside antibiotic resistance of actinomycetes and its exploitation in the search for novel antibiotics
    • Hotta, K., and Okami, Y. 1996. Diversity in aminoglycoside antibiotic resistance of actinomycetes and its exploitation in the search for novel antibiotics. J. Ind. Microbiol. 17: 352-358.
    • (1996) J. Ind. Microbiol. , vol.17 , pp. 352-358
    • Hotta, K.1    Okami, Y.2
  • 22
    • 0030272892 scopus 로고    scopus 로고
    • Biological control of fungi causing alfalfa seedling damping-off with a disease-suppressive strain of Streptomyces
    • Jones, C.R., and Samac, D.A. 1996. Biological control of fungi causing alfalfa seedling damping-off with a disease-suppressive strain of Streptomyces. Biol. Control, 7: 196-204.
    • (1996) Biol. Control , vol.7 , pp. 196-204
    • Jones, C.R.1    Samac, D.A.2
  • 23
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Edited by H.N. Murro. Academic Press, Inc., New York
    • Jukes, T.H., and Cantor, C.R. 1969. Evolution of protein molecules. In Mammalian protein metabolism. Edited by H.N. Murro. Academic Press, Inc., New York. pp. 21-132.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 24
    • 0030785668 scopus 로고    scopus 로고
    • Application of the variable region in 16S rDNA to create an index for rapid species identification in the genus Streptomyces
    • Kataoka, M., Ueda, K., Kudo, T., Seki, T., and Yoshida, T. 1997. Application of the variable region in 16S rDNA to create an index for rapid species identification in the genus Streptomyces. FEMS Microbiol. Lett 151: 249-255.
    • (1997) FEMS Microbiol. Lett , vol.151 , pp. 249-255
    • Kataoka, M.1    Ueda, K.2    Kudo, T.3    Seki, T.4    Yoshida, T.5
  • 25
    • 2342607256 scopus 로고    scopus 로고
    • (University of Minnesota.) Unpublished data
    • Kinkel, L.L. 1997. (University of Minnesota.) Unpublished data.
    • (1997)
    • Kinkel, L.L.1
  • 26
    • 11944272751 scopus 로고
    • Statistical significance of the matrix correlation coefficient for comparing independent phylogenetic trees
    • Lapointe, F.-J., and Legendre, P. 1992. Statistical significance of the matrix correlation coefficient for comparing independent phylogenetic trees. Syst Biol. 41: 378-384.
    • (1992) Syst Biol. , vol.41 , pp. 378-384
    • Lapointe, F.-J.1    Legendre, P.2
  • 27
    • 0011127117 scopus 로고
    • Tubers from leaf-bud cuttings: A tool for potato seed certification and breeding programs
    • Lauer, F.I. 1977. Tubers from leaf-bud cuttings: a tool for potato seed certification and breeding programs. Am. Potato J. 54: 457-464.
    • (1977) Am. Potato J. , vol.54 , pp. 457-464
    • Lauer, F.I.1
  • 29
    • 0029929114 scopus 로고    scopus 로고
    • Selection and characterization of strains of Streptomyces suppressive to the potato scab pathogen
    • Liu, D., Anderson, N.A., and Kinkel, L.L. 1996. Selection and characterization of strains of Streptomyces suppressive to the potato scab pathogen. Can. J. Microbiol. 42: 487-502.
    • (1996) Can. J. Microbiol. , vol.42 , pp. 487-502
    • Liu, D.1    Anderson, N.A.2    Kinkel, L.L.3
  • 31
    • 0035001897 scopus 로고    scopus 로고
    • Phenotypic and genotypic characterization of antagonistic bacteria associated with roots of transgenic and non-transgenic potato plants
    • Lottmann, J., and Berg, G. 2001. Phenotypic and genotypic characterization of antagonistic bacteria associated with roots of transgenic and non-transgenic potato plants. Microbiol. Res. 156: 75-82.
    • (2001) Microbiol. Res. , vol.156 , pp. 75-82
    • Lottmann, J.1    Berg, G.2
  • 32
    • 0026667295 scopus 로고
    • The evolutionary role of secondary metabolites - A review
    • Maplestone, R.A., Stone, M.J., and Williams, D.H. 1992. The evolutionary role of secondary metabolites - a review. Gene, 115: 151-157.
    • (1992) Gene , vol.115 , pp. 151-157
    • Maplestone, R.A.1    Stone, M.J.2    Williams, D.H.3
  • 33
    • 0343903299 scopus 로고
    • Resistance to wheat stem rust in spring spelts
    • McVey, D.V., and Leonard, K.J. 1990. Resistance to wheat stem rust in spring spelts. Plant Dis. 74: 966-969.
    • (1990) Plant Dis. , vol.74 , pp. 966-969
    • McVey, D.V.1    Leonard, K.J.2
  • 34
    • 0028218750 scopus 로고
    • The distribution of antibiotic resistance patterns within streptomycetes and their use in secondary metabolite screening
    • Phillips, L., Wellington, E.M.H., and Rees, S.B. 1994. The distribution of antibiotic resistance patterns within streptomycetes and their use in secondary metabolite screening. J. Ind. Microbiol. 13: 53-62.
    • (1994) J. Ind. Microbiol. , vol.13 , pp. 53-62
    • Phillips, L.1    Wellington, E.M.H.2    Rees, S.B.3
  • 35
    • 0036315086 scopus 로고    scopus 로고
    • Differentiation of the physiological races of Peronospora valerianellae with a differential set of cultivars and RAPD-PCR
    • Pietrek, G., and Zinkernagel, V. 2002. Differentiation of the physiological races of Peronospora valerianellae with a differential set of cultivars and RAPD-PCR. J. Plant Dis. Prot. 109: 329-337.
    • (2002) J. Plant Dis. Prot. , vol.109 , pp. 329-337
    • Pietrek, G.1    Zinkernagel, V.2
  • 36
    • 0002275272 scopus 로고    scopus 로고
    • Characterization of the diversity of ecologically important microbes by rep-PCR genomic fingerprinting
    • 3.4.3
    • Rademaker, J.L.W., Louws, F.J., and de Bruijn, F.J. 1998. Characterization of the diversity of ecologically important microbes by rep-PCR genomic fingerprinting. Mol. Microbiol. Ecol. Man. 3.4.3: 1-27.
    • (1998) Mol. Microbiol. Ecol. Man. , pp. 1-27
    • Rademaker, J.L.W.1    Louws, F.J.2    De Bruijn, F.J.3
  • 38
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saito, N., and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saito, N.1    Nei, M.2
  • 43
    • 0000825481 scopus 로고
    • A statistical method for evaluating systematic relationships
    • Sokal, R.R., and Michener, C.D. 1958. A statistical method for evaluating systematic relationships. Univ. Kans. Sci. Bull. 38: 1409-1438.
    • (1958) Univ. Kans. Sci. Bull. , vol.38 , pp. 1409-1438
    • Sokal, R.R.1    Michener, C.D.2
  • 45
  • 46
    • 0029913656 scopus 로고    scopus 로고
    • Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences
    • Takeuchi, T., Sawada, H., Tanaka, F., and Matsuda, I. 1996. Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences. Int. J. Syst Bacteriol. 46: 476-479.
    • (1996) Int. J. Syst Bacteriol. , vol.46 , pp. 476-479
    • Takeuchi, T.1    Sawada, H.2    Tanaka, F.3    Matsuda, I.4
  • 47
    • 0004633468 scopus 로고
    • Metabolism and products of actinomycetes: An introduction
    • Tanaka, Y., and Omura, S. 1990. Metabolism and products of actinomycetes: an introduction. Actinomycetologica, 4: 13-14.
    • (1990) Actinomycetologica , vol.4 , pp. 13-14
    • Tanaka, Y.1    Omura, S.2
  • 48
    • 0033495437 scopus 로고    scopus 로고
    • Antibiotic resistance patterns of Frankia strains
    • Tisa, L.S., Chval, M.S., Krumholz, G.D., and Richards, J. 1999. Antibiotic resistance patterns of Frankia strains. Can. J. Bot. 77: 1257-1260.
    • (1999) Can. J. Bot. , vol.77 , pp. 1257-1260
    • Tisa, L.S.1    Chval, M.S.2    Krumholz, G.D.3    Richards, J.4
  • 49
    • 0029416556 scopus 로고
    • Carbon source utilization of soil extracted microorganisms as a tool to detect the effects of soil supplemented with genetically engineered and non-engineered Corynebacterium glutamicum and a recombinant peptide at the community level
    • Vahjen, W., Munch, J.-C., and Tebbe, C.C. 1995. Carbon source utilization of soil extracted microorganisms as a tool to detect the effects of soil supplemented with genetically engineered and non-engineered Corynebacterium glutamicum and a recombinant peptide at the community level FEMS Microbiol. Ecol. 18: 317-328.
    • (1995) FEMS Microbiol. Ecol. , vol.18 , pp. 317-328
    • Vahjen, W.1    Munch, J.-C.2    Tebbe, C.C.3
  • 51
    • 0027992990 scopus 로고
    • Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction
    • Versalovic, J., Schneider, M., de Bruijn, F.J., and Lupski, J.R. 1994. Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol. Cell. Biol. 5: 24-40.
    • (1994) Methods Mol. Cell. Biol. , vol.5 , pp. 24-40
    • Versalovic, J.1    Schneider, M.2    De Bruijn, F.J.3    Lupski, J.R.4
  • 52
    • 0015352962 scopus 로고
    • Bacteriocins of the phytopathogens Pseudomonas syringae, P. glycinea, and P. phaseolicola
    • Vidaver, A.K., Mathys, M.L., Thomas, M.E., and Schuster, M.L. 1972. Bacteriocins of the phytopathogens Pseudomonas syringae, P. glycinea, and P. phaseolicola. Can. J. Microbiol. 18: 705-713.
    • (1972) Can. J. Microbiol. , vol.18 , pp. 705-713
    • Vidaver, A.K.1    Mathys, M.L.2    Thomas, M.E.3    Schuster, M.L.4
  • 53
    • 0025173716 scopus 로고
    • Functions of secondary metabolites
    • Vining, L.C. 1990. Functions of secondary metabolites. Annu. Rev. Microbiol. 44: 395-427.
    • (1990) Annu. Rev. Microbiol. , vol.44 , pp. 395-427
    • Vining, L.C.1
  • 54
    • 0037279311 scopus 로고    scopus 로고
    • Further contributions to the development of a differential set of pea cultivars (Pisum sativum) to investigate the virulence of isolates of Aphanomyces euteiches
    • Wicker, E., Moussart, A., Duparque, M., and Rouxel, F. 2003. Further contributions to the development of a differential set of pea cultivars (Pisum sativum) to investigate the virulence of isolates of Aphanomyces euteiches. Eur. J. Plant Path. 109: 47-60.
    • (2003) Eur. J. Plant Path. , vol.109 , pp. 47-60
    • Wicker, E.1    Moussart, A.2    Duparque, M.3    Rouxel, F.4
  • 55
    • 0032170134 scopus 로고    scopus 로고
    • Evidence for transfer of antibiotic-resistance genes in soil populations of streptomycetes
    • Wiener, P., Egan, S., and Wellington, E.M.H. 1998. Evidence for transfer of antibiotic-resistance genes in soil populations of streptomycetes. Mol. Ecol. 7: 1205-1216.
    • (1998) Mol. Ecol. , vol.7 , pp. 1205-1216
    • Wiener, P.1    Egan, S.2    Wellington, E.M.H.3
  • 56
    • 0022618049 scopus 로고
    • The ecology of antibiotic production
    • Williams, S.T., and Vickers, J.C. 1986. The ecology of antibiotic production. Microbial. Ecol. 12: 43-52.
    • (1986) Microbial. Ecol. , vol.12 , pp. 43-52
    • Williams, S.T.1    Vickers, J.C.2
  • 57
    • 0024947834 scopus 로고
    • Why are secondary metabolites (natural products) biosynthesized?
    • Williams, D.H., Stone, M.J., Hauck, P.R., and Rahman, S.K. 1989a. Why are secondary metabolites (natural products) biosynthesized? J. Nat Prod. 52: 1189-1208.
    • (1989) J. Nat Prod. , vol.52 , pp. 1189-1208
    • Williams, D.H.1    Stone, M.J.2    Hauck, P.R.3    Rahman, S.K.4
  • 59
    • 2342498823 scopus 로고    scopus 로고
    • (University of Minnesota.) Unpublished data
    • Xiao, K., and Kinkel, L.L. 2003. (University of Minnesota.) Unpublished data.
    • (2003)
    • Xiao, K.1    Kinkel, L.L.2
  • 60
    • 0036119750 scopus 로고    scopus 로고
    • Biological control of Phytophthora root rots on alfalfa and soybean with Streptomyces
    • Xiao, K., Kinkel, L.L., and Samac, D.A. 2002. Biological control of Phytophthora root rots on alfalfa and soybean with Streptomyces. Biol. Control 23: 285-295.
    • (2002) Biol. Control , vol.23 , pp. 285-295
    • Xiao, K.1    Kinkel, L.L.2    Samac, D.A.3
  • 61
    • 0028160654 scopus 로고
    • Functional diversity of microbial communities: A quantitative approach
    • Zak, J.C., Willig, M.R., Moorhead, D.L., and Wildman, H.G. 1994. Functional diversity of microbial communities: a quantitative approach. Soil Biol. Biochem. 26: 1101-1108.
    • (1994) Soil Biol. Biochem. , vol.26 , pp. 1101-1108
    • Zak, J.C.1    Willig, M.R.2    Moorhead, D.L.3    Wildman, H.G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.