Pedobacter lentus sp. nov. and Pedobacter terricola sp. nov., isolated from soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 9, 2007, Pages 2089-2095

  Yoon, Jung Hoon ^a   Kang, So Jung ^a   Park, Sooyeon ^a   Oh, Tae Kwang ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; BACTERIAL DNA; CARBENICILLIN; CEFALOTIN; CHLORAMPHENICOL; CYTOSINE; FATTY ACID; GENTAMICIN; GUANINE; KANAMYCIN; LINCOMYCIN; MENAQUINONE; NEOMYCIN; NOVOBIOCIN; OLEANDOMYCIN; PENICILLIN G; POLYMYXIN B; RNA 16S; SODIUM CHLORIDE; STREPTOMYCIN; TETRACYCLINE;

ANIMAL CELL; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; GENUS; GRAM NEGATIVE BACTERIUM; KOREA; LIPID COMPOSITION; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PEDOBACTER LENTUS; PEDOBACTER TERRICOLA; PH; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SOIL MICROFLORA; SPECIES DIFFERENCE; SPHINGOBACTERIACEAE; STRAIN IDENTIFICATION; TAXONOMY; TEMPERATURE;

ANTI-BACTERIAL AGENTS; BACTERIAL TYPING TECHNIQUES; BACTEROIDETES; BASE COMPOSITION; CARBOHYDRATE METABOLISM; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; HYDROGEN-ION CONCENTRATION; KOREA; MICROBIAL SENSITIVITY TESTS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SODIUM CHLORIDE; SOIL MICROBIOLOGY; TEMPERATURE; VITAMIN K 2;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PEDOBACTER; SPHINGOBACTERIACEAE; SPHINGOBACTERIUM; TERRICOLA;

EID: 34848917966     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65146-0     Document Type: Article

References (26)

1. Bernardet J.-F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
2. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861-1868.
3. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Gallego, V., García, M. T. & Ventosa, A. (2006). Pedobacter aquatilis sp. nov., isolated from drinking water, and emended description of the genus Pedobacter. Int J Syst Evol Microbiol 56, 1853-1858.
6. Hwang, C. Y., Choi, D. H. & Cho, B. C. (2006). Pedobacter roseus, sp. nov., isolated from a hypertrophic pond, and emended description of the genus Pedobacter. Int J Syst Evol Microbiol 56, 1831-1836.
7. Kim, K.-H., Ten, L. N., Liu, Q-M., Im, W.-T. & Lee, S.-T. (2006). Sphingobacterium daejeonense sp. nov., isolated from a compost sample. Int J Syst Evol Microbiol 56, 2031-2036.
8. Komagata, K. & Suzuki, K. (1987). Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
9. Kwon, S.-W., Kim, B. Y., Lee, K.-H., Jang, K.-Y., Seok, S.-J., Kwon, J.-S., Kim, W.-G. & Weon, H. Y. (2007). Pedobacter suwonensis sp. nov., isolated from the rhizosphere of Chinese cabbage (Brassica campestris). Int J Syst Evol Microbiol 57, 480-484.
10. Lanyi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
11. Margesin, R., Spröer, C., Schumann, P. & Schinner, F. (2003). Pedobacter cryoconitis sp. nov., a facultative psychrophile from alpine glacier cryoconite. Int J Syst Evol Microbiol 53, 1291-1296.
12. Reichenbach, H. (1992). The order Cytophagales. In The Prokaryotes. A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, 2nd edn, pp. 3631-3675. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
13. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. Newark, DE: MIDI Inc.
14. Shivaji, S., Chaturvedi, P., Reddy, G. S. N. & Suresh, K. (2005). Pedobacter himalayensis sp. nov., from the Hamta glacier located in the Himalayan mountain ranges of India. Int J Syst Evol Microbiol 55, 1083-1088.
15. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol b 44, 846-849.
16. Steyn, P. L., Segers, P., Vancanneyt, M., Sandra, P., Kersters, K. & Joubert, J. J. (1998). Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov. Int J Syst Bacteriol 48, 165-177.
17. Takeuchi, M. & Yokota, A. (1992). Proposals of Sphingobacterium faecium sp. nov., Sphingobacterium piscium sp. nov., Sphingobacterium heparinum comb. nov., Sphingobacterium thalpophilum comb. nov., and two genospecies of the genus Sphingobacterium, and synonymy of Flavobacterium yabuuchiae and Sphingobacterium spiritivorum. J Gen Appl Microbiol 38, 465-482.
18. Tamaoka, J. & Komagata, K (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
19. Ten, L. N., Liu, Q.-M., Im, W.-T., Lee, M., Yang, D.-C. & Lee, S.-T. (2006). Pedobacter ginsengisoli sp. nov., a novel DNase-producing bacterium isolated from soil of a ginseng field in South Korea. Int J Syst Evol Microbiol 56, 2565-2570.
20. Vanparys, B., Heylen, K., Lebbe, L. & De Vos, P. (2005). Pedobacter caeni sp. nov., a novel species isolated from a nitrifying inoculum. Int J Syst Evol Microbiol 55, 1315-1318.
21. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
22. Yoon, J.-H., Kim, H., Kim, S.-B., Kim, H.-J., Kim, W. Y., Lee, S. T., Goodfellow, M. & Park, Y.-H. (1996). Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 46, 502-505.
23. Yoon, J.-H., Lee, S. T. &.Park, Y.-H. (1998). Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rRNA gene sequences. Int J Syst Bacteriol 48, 187-194.
24. Yoon, J.-H., Kim, I.-G., Shin, D.-Y., Kang, K. H. & Park Y.-H. (2003). Microbulbifer salipaludis sp. nov., a moderate halophile isolated from a Korean salt marsh. Int J Syst Evol Microbiol 53, 53-57.
25. Yoon, J.-H., Lee, M.-H., Kang, S.-J., Park S.-Y. & Oh, T.-K. (2006). Pedobacter sandarakinus sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 1273-1277.
26. Yoon, M.-H., Ten, L. N., Im, W.-T. & Lee, S.-T. (2007). Pedobacter panaciterrae sp. nov., isolated from soil in South Korea. Int J Syst Evol Microbiol 57, 381-386.