Design of recombinant antibody microarrays for complex proteome analysis: Choice of sample labeling-tag and solid support

Proteomics

Volumn 7, Issue 17, 2007, Pages 3055-3065

  Wingren, Christer ^a   Ingvarsson, Johan ^a   Dexlin, Linda ^a   Szul, Dominika ^a   Borrebaeck, Carl A K ^a  

^a LUND UNIVERSITY   (Sweden)

Author keywords

Antibody microarray; Protein labeling; Proteome analysis; Recombinant scFv; Solid support

Indexed keywords

BIOTIN; DYE; PROTEOME; RECOMBINANT ANTIBODY; SINGLE CHAIN FRAGMENT VARIABLE ANTIBODY;

ARTICLE; BIOTINYLATION; CONTROLLED STUDY; HUMAN; HUMAN CELL; METHODOLOGY; MICROARRAY ANALYSIS; MORPHOLOGY; NORMAL HUMAN; PERFORMANCE; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; SOLID; SURFACE PROPERTY;

BIOTINYLATION; CARBOCYANINES; CYCLIC AMP; FLUORESCENT DYES; HUMANS; IMMUNOGLOBULIN VARIABLE REGION; PROTEIN ARRAY ANALYSIS; PROTEOME; PROTEOMICS; RECOMBINANT PROTEINS; SENSITIVITY AND SPECIFICITY;

EID: 34748919097     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200700025     Document Type: Article

References (60)

1. Ek, S., Andreasson, U., Hober, S., Kampf, C. et al., Mol. Cell. Proteomics 2006, 5, 1072-1081.
2. Hanash, S., Nature 2003, 422, 226-232.
3. Staudt, L. M., Annu. Rev. Med. 2002, 53, 303-318.
4. Jang, J. H., Hanash, S., Proteomics 2003, 3, 1947-1954.
5. Phizicky, E., Bastiaens, P. I., Zhu, H., Snyder, M., Fields, S., Nature 2003, 422, 208-215.
6. Yanagida, M., J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2002, 771, 89-106.
7. Zhu, H., Bilgin, M., Snyder, M., Annu. Rev. Biochem. 2003, 72, 783-812.
8. Borrebaeck, C. A. K., Expert Opin. Biol. Ther. 2006, 6, 833-838.
9. Wingren, C., Borrebaeck, C. A. K., Expert Rev. Proteomics 2004, 1, 355-364.
10. Zhu, H., Snyder, M., Curr. Opin. Chem. Biol. 2003, 7, 55-63.
11. Gorg, A., Weiss, W., Dunn, M. J., Proteomics 2004, 4, 3665-3685.
12. Adkins, J. N., Varnum, S. M., Auberry, K. J., Moore, R. J. et al., Mol. Cell. Proteomics 2002, 1, 947-955.
13. Anderson, N. L., Polanski, M., Pieper, R., Gatlin, T. et al., Mol. Cell. Proteomics 2004, 3, 311-326.
14. Tirumalai, R. S., Chan, K. C., Prieto, D. A., Issaq, H. J. et al., Mol. Cell. Proteomics 2003, 2, 1096-1103.
15. Haab, B. B., Curr. Opin. Biotechnol. 2006, 17, 415-421.
16. Kingsmore, S. F., Nat. Rev. Drug Discov. 2006, 5, 310-320.
17. Wingren, C., Borrebaeck, C. A. K., OMICS 2006, 10, 411-427.
18. Angenendt, P., Drug Discov. Today 2005, 10, 503-511.
19. Haab, B. B., Proteomics 2003, 3, 2116-2122.
20. Angenendt, P., Glokler, J., Murphy, D., Lehrach, H., Cahill, D. J., Anal. Biochem. 2002, 309, 253-260.
21. Kingsmore, S. F., Patel, D. D., Curr. Opin. Biotechnol. 2003, 14, 74-82.
22. Kusnezow, W., Hoheisel, J. D., J. Mol. Recognit. 2003, 16, 165-176.
23. Pavlickova, P., Schneider, E. M., Hug, H., Clin. Chim. Acta 2004, 343, 17-35.
24. Gao, W. M., Kuick, R., Orchekowski, R. P., Misek, D. E. et al., BMC Cancer 2005, 5, 110.
25. Miller, J. C., Zhou, H., Kwekel, J., Cavallo, R. et al., Proteomics 2003, 3, 56-63.
26. Orchekowski, R., Hamelinck, D., Li, L., Gliwa, E. et al., Cancer Res. 2005, 65, 11193-11202.
27. Sreekumar, A., Nyati, M. K., Varambally, S., Barrette, T. R. et al., Cancer Res. 2001, 61, 7585-7593.
28. Wingren, C., Borrebaeck, C. A. K., Screen. - Trends Drug Discov. 2006, 2, 13-15.
29. Ingvarsson, J., Lindstedt, M., Borrebaeck, C. A. K., Wingren, C., J. Proteome Res. 2006, 5, 170-176.
30. Steinhauer, C., Ressine, A., Marko-Varga, G., Laurell, T. et al., Anal. Biochem. 2005, 341, 204-213.
31. Steinhauer, C., Wingren, C., Hager, A. C., Borrebaeck, C. A. K., Biotechniques 2002, Suppl, 38-45.
32. Steinhauer, C., Wingren, C., Khan, F., He, M. et al., Proteomics 2006, 6, 4227-4234.
33. Wingren, C., Steinhauer, C., Ingvarsson, J., Persson, E. et al., Proteomics 2005, 5, 1281-1291.
34. Borrebaeck, C. A. K., Ekstrom, S., Hager, A. C., Nilsson, J. et al., Biotechniques 2001, 30, 1126-1130, 1132.
35. Soderlind, E., Strandberg, L., Jirholt, P., Kobayashi, N. et al., Nat. Biotechnol. 2000, 18, 852-856.
36. Wingren, C., Ingvarsson, J., Lindstedt, M., Borrebaeck, C. A. K., Nat. Biotechnol. 2003, 21, 223.
37. Ghatnekar-Nilsson, S., Dexlin, L., Wingren, C., Montelius, L., Borrebaeck Carl, A. K., Proteomics 2007, 7, 540-547.
38. Wingren, C., Montelius, L., Borrebaeck Carl, A. K., Megadense Nanoarrays - The Challenge of Novel Antibody Array Formats, Jones and Bartlett Publishers MA, USA, 2004.
39. Lindstedt, M., Johansson-Lindbom, B., Borrebaeck, C. A. K., Int. Immunol. 2002, 14, 1203-1213.
40. Haab, B. B., Methods Mol. Med. 2005, 114, 183-194.
41. Haab, B. B., Zhou, H., Methods Mol. Biol. 2004, 264, 33-45.
42. Knezevic, V., Leethanakul, C., Bichsel, V. E., Worth, J. M. et al., Proteomics 2001, 1, 1271-1278.
43. Kusnezow, W., Hoheisel, J. D., Biotechniques 2002, Suppl, 14-23.
44. Sanchez-Carbayo, M., Socci, N. D., Lozano, J. J., Haab, B. B., Cordon-Cardo, C., Am. J. Pathol. 2006, 168, 93-103.
45. Svedhem, S., Pfeiffer, I., Larsson, C., Wingren, C. et al., Chembiochem. 2003, 4, 339-343.
46. Ingvarsson, J., Larsson, A., Sjöholm, L., Truedsson, L. et al., J. Proteome Res. 2007, in press.
47. Larsson, C., Bramfeldt, H., Wingren, C., Borrebaeck, C. A. K., Hook, F., Anal. Biochem. 2005, 345, 72-80.
48. Schweitzer, B., Roberts, S., Grimwade, B., Shao, W. et al., Nat. Biotechnol. 2002, 20, 359-365.
49. Hegner, M., Arntz, Y., Methods Mol. Biol. 2004, 242, 39-49.
50. Andersson, O., Kozlowski, M., Garachtchenko, T., Nikoloff, C. et al., J. Proteome Res. 2005, 4, 758-767.
51. Bartling, B., Hofmann, H. S., Boettger, T., Hansen, G. et al., Lung Cancer 2005, 49, 145-154.
52. Guilleaume, B., Buness, A., Schmidt, C., Klimek, F. et al., Proteomics 2005, 5, 4705-4712.
53. Pawlak, M., Schick, E., Bopp, M. A., Schneider, M. J. et al., Proteomics 2002, 2, 383-393.
54. Schweitzer, B., Wiltshire, S., Lambert, J., O'Malley, S. et al., Proc. Natl. Acad. Sci. USA 2000, 97, 10113-10119.
55. Shao, W., Zhou, Z., Laroche, I., Lu, H. et al., J. Biomed. Biotechnol. 2003, 2003, 299-307.
56. Pieper, R., Gatlin, C. L., Makusky, A. J., Russo, P. S. et al., Proteomics 2003, 3, 1345-1364.
57. Righetti, P. G., Castagna, A., Herbert, B., Reymond, F., Rossier, J. S., Proteomics 2003, 3, 1397-1407.
58. Haab, B. B., Dunham, M. J., Brown, P. O., Genome Biol. 2001, 2, RESEARCH0004.
59. MacBeath, G., Nat. Genet. 2002, 32, 526-532.
60. Mitchell, P., Nat. Biotechnol. 2002, 20, 225-229.