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Volumn 7, Issue SUPPL. 2, 2007, Pages

The primordial metabolism: An ancestral interconnection between leucine, arginine, and lysine biosynthesis

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; LEUCINE; LYSINE; METHIONINE; THREONINE;

EID: 34648851384     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-7-S2-S3     Document Type: Article
Times cited : (31)

References (49)
  • 2
    • 0017272554 scopus 로고
    • Enzyme Recruitment in Evolution of New Function
    • 10.1146/annurev.mi.30.100176.002205. 791073
    • Enzyme Recruitment in Evolution of New Function. RA Jensen, Annual Review of Microbiology 1976 30 409 425 10.1146/annurev.mi.30.100176.002205 791073
    • (1976) Annual Review of Microbiology , vol.30 , pp. 409-425
    • Jensen, R.A.1
  • 4
    • 0002974895 scopus 로고
    • Lysine biosynthesis and evolution
    • New York Academic Press editor Bryson V, Vogel HJ
    • Lysine biosynthesis and evolution. HJ Vogel, Evolving genes and proteins New York Academic Press, Bryson V, Vogel HJ, 1965 25 40
    • (1965) Evolving Genes and Proteins , pp. 25-40
    • Vogel, H.J.1
  • 5
    • 0017794395 scopus 로고
    • Amino acid biosynthesis and its regulation
    • 10.1146/annurev.bi.47.070178.002533. 354503
    • Amino acid biosynthesis and its regulation. HE Umbarger, Annu Rev Biochem 1978 47 532 606 10.1146/annurev.bi.47.070178.002533 354503
    • (1978) Annu Rev Biochem , vol.47 , pp. 532-606
    • Umbarger, H.E.1
  • 6
    • 0002974535 scopus 로고
    • Evolution of α-aminoadipate pathway for the synthesis of lysine in fungi
    • Boca Raton, Florida CRC Press editor Mortlock RP
    • Evolution of α-aminoadipate pathway for the synthesis of lysine in fungi. JK Bhattacharjee, The Evolution of Metabolic Function Boca Raton, Florida CRC Press, Mortlock RP, 1992 47 80
    • (1992) The Evolution of Metabolic Function , pp. 47-80
    • Bhattacharjee, J.K.1
  • 7
    • 0032466343 scopus 로고    scopus 로고
    • Lysine is synthesized through the α-aminoadipate pathway in Thermus thermophilus
    • 9868782
    • Lysine is synthesized through the α-aminoadipate pathway in Thermus thermophilus. T Kosuge T Hoshino, FEMS Microbiol Lett 1998 169 361 367 9868782
    • (1998) FEMS Microbiol Lett , vol.169 , pp. 361-367
    • Kosuge, T.1    Hoshino, T.2
  • 8
    • 0033404080 scopus 로고    scopus 로고
    • A Prokaryotic Gene Cluster Involved in Synthesis of Lysine through the Amino Adipate Pathway: A Key to the Evolution of Amino Acid Biosynthesis
    • 10.1101/gr.9.12.1175. 10613839
    • A Prokaryotic Gene Cluster Involved in Synthesis of Lysine through the Amino Adipate Pathway: A Key to the Evolution of Amino Acid Biosynthesis. H Nishida M Nishiyama N Kobashi T Kosuge T Hoshino H Yamane, Genome Res 1999 9 1175 1183 10.1101/gr.9.12.1175 10613839
    • (1999) Genome Res , vol.9 , pp. 1175-1183
    • Nishida, H.1    Nishiyama, M.2    Kobashi, N.3    Kosuge, T.4    Hoshino, T.5    Yamane, H.6
  • 9
    • 0035098837 scopus 로고    scopus 로고
    • Distribution of genes for lysine biosynthesis through the aminoadipate pathway among prokaryotic genomes
    • 10.1093/bioinformatics/17.2.189. 11238076
    • Distribution of genes for lysine biosynthesis through the aminoadipate pathway among prokaryotic genomes. H Nishida, Bioinformatics 2001 17 189 191 10.1093/bioinformatics/17.2.189 11238076
    • (2001) Bioinformatics , vol.17 , pp. 189-191
    • Nishida, H.1
  • 10
    • 0024854674 scopus 로고
    • 13C-NMR study of acetate assimilation in Thermoproteus neutrophilus
    • 10.1111/j.1432-1033.1989.tb15262.x. 2514097
    • 13C-NMR study of acetate assimilation in Thermoproteus neutrophilus. S Schafer T Paalme R Vilu G Fuchs, Eur J Biochem 1989 186 695 700 10.1111/j.1432-1033.1989.tb15262.x 2514097
    • (1989) Eur J Biochem , vol.186 , pp. 695-700
    • Schafer, S.1    Paalme, T.2    Vilu, R.3    Fuchs, G.4
  • 11
    • 0024457822 scopus 로고
    • Biochemical pathways and the phylogeny of the eukariotes
    • New York: Elsevier editor Fernhulm B, Bremer K, Jornvall H
    • Biochemical pathways and the phylogeny of the eukariotes. MA Ragan, The hierarchy of life New York: Elsevier, Fernhulm B, Bremer K, Jornvall H, 1989 145 160
    • (1989) The Hierarchy of Life , pp. 145-160
    • Ragan, M.A.1
  • 12
    • 0014690579 scopus 로고
    • Separation and specificity of the yeast glutamate-α-ketoadipate transaminase
    • 5792664
    • Separation and specificity of the yeast glutamate-α-ketoadipate transaminase. M Matsuda M Ogur, J Biol Chem 1969 244 3352 3358 5792664
    • (1969) J Biol Chem , vol.244 , pp. 3352-3358
    • Matsuda, M.1    Ogur, M.2
  • 13
    • 0014900464 scopus 로고
    • Homoisocitric dehydrogenase from yeast
    • 10.1016/0003-9861(70)90167-0. 4395693
    • Homoisocitric dehydrogenase from yeast. B Rowley AF Tucci, Arch Biochem Biophys 1970 141 499 510 10.1016/0003-9861(70)90167-0 4395693
    • (1970) Arch Biochem Biophys , vol.141 , pp. 499-510
    • Rowley, B.1    Tucci, A.F.2
  • 14
    • 0030758003 scopus 로고    scopus 로고
    • The Aspergillus nidulans lysF gene encodes homoaconitase, an enzyme involved in the fungus-specific lysine biosynthesis pathway
    • 10.1007/s004380050494. 9268014
    • The Aspergillus nidulans lysF gene encodes homoaconitase, an enzyme involved in the fungus-specific lysine biosynthesis pathway. G Weidner B Steffan AA Brakhage, Mol Gen Genet 1997 255 237 147 10.1007/s004380050494 9268014
    • (1997) Mol Gen Genet , vol.255 , pp. 237-147
    • Weidner, G.1    Steffan, B.2    Brakhage, A.A.3
  • 15
    • 11844302399 scopus 로고
    • On biochemical evolution: Lysine formation in higher plants
    • 16590563. 10.1073/pnas.45.12.1717
    • On biochemical evolution: lysine formation in higher plants. HJ Vogel, Proc Natl Acad Sci USA 1959 45 1717 1721 16590563 10.1073/pnas.45.12.1717
    • (1959) Proc Natl Acad Sci USA , vol.45 , pp. 1717-1721
    • Vogel, H.J.1
  • 16
    • 0015234955 scopus 로고
    • Enzyme Regulation, Lysine Pathways and Cell Wall Structures as Indicators of Major Lines of Evolution in Fungi
    • 10.1038/231164a0. 4397004
    • Enzyme Regulation, Lysine Pathways and Cell Wall Structures as Indicators of Major Lines of Evolution in Fungi. HB Lèjohn, Nature 1971 231 164 168 10.1038/231164a0 4397004
    • (1971) Nature , vol.231 , pp. 164-168
    • Lèjohn, H.B.1
  • 17
    • 0028233325 scopus 로고
    • Genetic determination of the meso-diaminopimelate biosynthetic pathway of mycobacteria
    • 8021227
    • Genetic determination of the meso-diaminopimelate biosynthetic pathway of mycobacteria. JD Cirillo TR Weisbrod A Banerjee BR Bloom WR Jacobs Jr, J Bacteriol 1994 176 4424 4429 8021227
    • (1994) J Bacteriol , vol.176 , pp. 4424-4429
    • Cirillo, J.D.1    Weisbrod, T.R.2    Banerjee, A.3    Bloom, B.R.4    Jacobs Jr., W.R.5
  • 18
    • 0031750104 scopus 로고    scopus 로고
    • Different Modes of Diaminopimelate Synthesis and Their Role in Cell Wall Integrity: A Study with Corynebacterium glutamicum
    • 9620966
    • Different Modes of Diaminopimelate Synthesis and Their Role in Cell Wall Integrity: a Study with Corynebacterium glutamicum. A Wehrmann B Phillipp H Sahm L Eggeling, J Bacteriol 1998 180 3159 3165 9620966
    • (1998) J Bacteriol , vol.180 , pp. 3159-3165
    • Wehrmann, A.1    Phillipp, B.2    Sahm, H.3    Eggeling, L.4
  • 19
    • 0036789272 scopus 로고    scopus 로고
    • Molecular Evolution of the Lysine Biosynthetic Pathways
    • 10.1007/s00239-002-2340-2. 12355264
    • Molecular Evolution of the Lysine Biosynthetic Pathways. AM Velasco JI Leguina A Lazcano, Journal of Molecular Evolution 2002 55 445 449 10.1007/s00239-002-2340-2 12355264
    • (2002) Journal of Molecular Evolution , vol.55 , pp. 445-449
    • Velasco, A.M.1    Leguina, J.I.2    Lazcano, A.3
  • 20
    • 34248227558 scopus 로고    scopus 로고
    • On the origin and evolution of biosynthetic pathways: Integrating microarray data with structure and organization of the Common Pathway genes
    • 10.1186/1471-2105-8-S1-S12
    • On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common Pathway genes. M Fondi M Brilli R Fani, BMC Bionformatics 2007 8 Suppl 1 S12 10.1186/1471-2105-8- S1-S12
    • (2007) BMC Bionformatics , vol.8 , Issue.SUPPL. 1 , pp. 12
    • Fondi, M.1    Brilli, M.2    Fani, R.3
  • 21
    • 0031960184 scopus 로고    scopus 로고
    • A Unique Fungal Lysine Biosynthesis Enzyme Shares a Common Ancestor with Tricarboxylic Acid Cycle and Leucine Biosynthetic Enzymes Found in Diverse Organisms
    • 10.1007/PL00006319. 9541534
    • A Unique Fungal Lysine Biosynthesis Enzyme Shares a Common Ancestor with Tricarboxylic Acid Cycle and Leucine Biosynthetic Enzymes Found in Diverse Organisms. SD Irvin JK Bhattacharjee, Journal of Molecular Evolution 1998 46 401 408 10.1007/PL00006319 9541534
    • (1998) Journal of Molecular Evolution , vol.46 , pp. 401-408
    • Irvin, S.D.1    Bhattacharjee, J.K.2
  • 22
    • 0037070156 scopus 로고    scopus 로고
    • Characterization of a lysK gene as an argE homolog in Thermus thermophilus HB27
    • 10.1016/S0014-5793(02)02290-1. 11852094
    • Characterization of a lysK gene as an argE homolog in Thermus thermophilus HB27. J Miyazaki N Kobashi T Fujii M Nishiyama H Yamane, FEBS Lett 2002 512 269 274 10.1016/S0014-5793(02)02290-1 11852094
    • (2002) FEBS Lett , vol.512 , pp. 269-274
    • Miyazaki, J.1    Kobashi, N.2    Fujii, T.3    Nishiyama, M.4    Yamane, H.5
  • 24
    • 0021245679 scopus 로고
    • Lysine biosynthesis in Methanobacterium thermoautotrophicum is by the diaminopimelic acid pathway
    • 10.1007/BF01627254
    • Lysine biosynthesis in Methanobacterium thermoautotrophicum is by the diaminopimelic acid pathway. N Bakhiet FW Forney DP Stahly L Daniels, Current Microbiology 1984 10 195 198 10.1007/BF01627254
    • (1984) Current Microbiology , vol.10 , pp. 195-198
    • Bakhiet, N.1    Forney, F.W.2    Stahly, D.P.3    Daniels, L.4
  • 27
    • 0343488601 scopus 로고    scopus 로고
    • A reconstruction of the metabolism of Methanococcus jannaschii from sequence data
    • 10.1016/S0378-1119(97)00307-7. 9332394
    • A reconstruction of the metabolism of Methanococcus jannaschii from sequence data. E Selkov N Maltsev GJ Olsen R Overbeek WB Whitman, Gene 1997 197 GC11 26 10.1016/S0378-1119(97)00307-7 9332394
    • (1997) Gene , vol.197 , pp. 11-26
    • Selkov, E.1    Maltsev, N.2    Olsen, G.J.3    Overbeek, R.4    Whitman, W.B.5
  • 29
    • 0038000608 scopus 로고    scopus 로고
    • N-acetylglutamate and its changing role through evolution
    • 12633501. 10.1042/BJ20030002
    • N-acetylglutamate and its changing role through evolution. L Caldovic M Tuchman, Biochem J 2003 372 2 279 290 12633501 10.1042/BJ20030002
    • (2003) Biochem J , vol.372 , Issue.2 , pp. 279-290
    • Caldovic, L.1    Tuchman, M.2
  • 30
    • 0033537677 scopus 로고    scopus 로고
    • The dual biosynthetic capability of N-acetylornithine aminotransferase in arginine and lysine biosynthesis
    • 10.1021/bi982574a. 10074354
    • The dual biosynthetic capability of N-acetylornithine aminotransferase in arginine and lysine biosynthesis. R Ledwidge JS Blanchard, Biochemistry 1999 38 3019 3024 10.1021/bi982574a 10074354
    • (1999) Biochemistry , vol.38 , pp. 3019-3024
    • Ledwidge, R.1    Blanchard, J.S.2
  • 31
    • 0000320052 scopus 로고
    • Synthesis of the aspartate family and branched chain amino acids
    • New York: Academic Press editor Miflin BJ
    • Synthesis of the aspartate family and branched chain amino acids. JK Bryan, The biochemistry of plants New York: Academic Press, Miflin BJ, 1980 5 402 452
    • (1980) The Biochemistry of Plants , vol.5 , pp. 402-452
    • Bryan, J.K.1
  • 32
    • 33645808723 scopus 로고    scopus 로고
    • An LL-Diaminopimelate Aminotransferase Defines a Novel Variant of the Lysine Biosynthesis Pathway in Plants
    • 16361515. 10.1104/pp.105.072629
    • An LL-Diaminopimelate Aminotransferase Defines a Novel Variant of the Lysine Biosynthesis Pathway in Plants. AO Hudson BK Singh T Leustek C Gilvarg, Plant Physiology 2006 140 292 301 16361515 10.1104/pp.105.072629
    • (2006) Plant Physiology , vol.140 , pp. 292-301
    • Hudson, A.O.1    Singh, B.K.2    Leustek, T.3    Gilvarg, C.4
  • 33
    • 17444381929 scopus 로고    scopus 로고
    • Bifunctional isocitrate-homoisocitrate dehydrogenase: A missing link in the evolution of beta-decarboxylating dehydrogenase
    • 10.1016/j.bbrc.2005.03.169. 15845397
    • Bifunctional isocitrate-homoisocitrate dehydrogenase: a missing link in the evolution of beta-decarboxylating dehydrogenase. K Miyazaki, Biochem Biophys Res Commun 2005 331 341 346 10.1016/j.bbrc.2005.03.169 15845397
    • (2005) Biochem Biophys Res Commun , vol.331 , pp. 341-346
    • Miyazaki, K.1
  • 35
    • 0032499698 scopus 로고    scopus 로고
    • The universal ancestor
    • 9618502. 10.1073/pnas.95.12.6854
    • The universal ancestor. C Woese, PNAS 1998 95 6854 6859 9618502 10.1073/pnas.95.12.6854
    • (1998) PNAS , vol.95 , pp. 6854-6859
    • Woese, C.1
  • 36
    • 33846349924 scopus 로고    scopus 로고
    • Rooting the tree of life by transition analyses
    • 16834776. 10.1186/1745-6150-1-19
    • Rooting the tree of life by transition analyses. T Cavalier-Smith, Biology Direct 2006 1 19 16834776 10.1186/1745-6150-1-19
    • (2006) Biology Direct , vol.1 , pp. 19
    • Cavalier-Smith, T.1
  • 37
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 7984417. 10.1093/nar/22.22.4673
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic Acids Res 1994 22 4673 4680 7984417 10.1093/nar/22.22.4673
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 38
    • 0042431971 scopus 로고    scopus 로고
    • Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicum
    • 10.1016/S0168-1656(03)00156-1. 12948639
    • Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicum. M Hartmann A Tauch L Eggeling B Bathe B Mockel A Puhler J Kalinowski, J Biotechnol 2003 104 199 211 10.1016/S0168-1656(03)00156-1 12948639
    • (2003) J Biotechnol , vol.104 , pp. 199-211
    • Hartmann, M.1    Tauch, A.2    Eggeling, L.3    Bathe, B.4    Mockel, B.5    Puhler, A.6    Kalinowski, J.7
  • 39
    • 0029919942 scopus 로고    scopus 로고
    • Evolutionary Recruitment of Biochemically Specialized Subdivisions of Family I within the Protein Superfamily of Aminotransferases
    • 8636014
    • Evolutionary Recruitment of Biochemically Specialized Subdivisions of Family I within the Protein Superfamily of Aminotransferases. RA Jensen W Gu, Journal of Bacteriology 1996 178 8 2161 2171 8636014
    • (1996) Journal of Bacteriology , vol.178 , Issue.8 , pp. 2161-2171
    • Jensen, R.A.1    Gu, W.2
  • 40
    • 0015462556 scopus 로고
    • Peptidoglycan Types of Bacterial Cell Walls and their Taxonomic Implications
    • 4568761
    • Peptidoglycan Types of Bacterial Cell Walls and their Taxonomic Implications. KH Schleifer O Kandler, Bacteriological Reviews 1972 36 407 477 4568761
    • (1972) Bacteriological Reviews , vol.36 , pp. 407-477
    • Schleifer, K.H.1    Kandler, O.2
  • 42
    • 0035102449 scopus 로고    scopus 로고
    • Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics
    • 10.1128/MMBR.65.1.44-79.2001. 11238985
    • Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics. KS Mkarova L Aravind YI Wolf RL Tatusov KW Minton EV Koonin MJ Daly, Microbiol Mol Biol Rev 2001 65 44 79 10.1128/MMBR.65.1.44-79.2001 11238985
    • (2001) Microbiol Mol Biol Rev , vol.65 , pp. 44-79
    • Mkarova, K.S.1    Aravind, L.2    Wolf, Y.I.3    Tatusov, R.L.4    Minton, K.W.5    Koonin, E.V.6    Daly, M.J.7
  • 43
    • 0031945225 scopus 로고    scopus 로고
    • Cell wall polymers in Archaea (Archaebacteria)
    • 10.1007/s000180050156. 9614965
    • Cell wall polymers in Archaea (Archaebacteria). O Kandlera H Konig, Cell Mol Life Sci 1998 54 305 308 10.1007/s000180050156 9614965
    • (1998) Cell Mol Life Sci , vol.54 , pp. 305-308
    • Kandlera, O.1    Konig, H.2
  • 45
    • 0031966808 scopus 로고    scopus 로고
    • Reconstruction of Amino Acid Biosynthesis Pathways from the Complete Genome Sequence
    • 9521924
    • Reconstruction of Amino Acid Biosynthesis Pathways from the Complete Genome Sequence. H Bono H Ogata S Goto M Kanehisa, Genome Res 1998 8 203 210 9521924
    • (1998) Genome Res , vol.8 , pp. 203-210
    • Bono, H.1    Ogata, H.2    Goto, S.3    Kanehisa, M.4
  • 46
    • 32644443138 scopus 로고    scopus 로고
    • Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes
    • 16436801. 10.1093/nar/gkj448
    • Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes. I Uchiyama, Nucleic Acids Research 2006 34 647 658 16436801 10.1093/nar/gkj448
    • (2006) Nucleic Acids Research , vol.34 , pp. 647-658
    • Uchiyama, I.1
  • 48
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. TA Hall, Nucl Acids Symp Ser 1999 41 95 98
    • (1999) Nucl Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 49
    • 3242810318 scopus 로고    scopus 로고
    • Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
    • 10.1093/bib/5.2.150. 15260895
    • Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. S Kumar K Tamura M Nei, Briefings in Bioinformatics 2004 5 150 163 10.1093/bib/5.2.150 15260895
    • (2004) Briefings in Bioinformatics , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3


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