Bifunctional isocitrate-homoisocitrate dehydrogenase: A missing link in the evolution of β-decarboxylating dehydrogenase

Biochemical and Biophysical Research Communications

Volumn 331, Issue 1, 2005, Pages 341-346

  Miyazaki, Kentaro ^a  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

3 Isopropylmalate dehydrogenase; Ancestral enzyme; Dual specificity; Homoisocitrate dehydrogenase; Isocitrate dehydrogenase; Decarboxylating dehydrogenase

Indexed keywords

3 ISOPROPYLMALATE DEHYDROGENASE; GLUTAMIC ACID; HOMOISOCITRATE DEHYDROGENASE; ISOCITRATE DEHYDROGENASE; LEUCINE; LYSINE; OXIDOREDUCTASE; RECOMBINANT ENZYME; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GROWTH; BIOSYNTHESIS; DECARBOXYLATION; ENZYME ACTIVITY; ENZYME SPECIFICITY; ESCHERICHIA COLI; EVOLUTION; GENE EXPRESSION; GENE SEQUENCE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PYROCOCCUS HORIKOSHII;

EID: 17444381929     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2005.03.169     Document Type: Article

References (20)

1. P.E. Thorsness, and D.E. Koshland Jr. Inactivation of isocitrate dehydrogenase by phosphorylation is mediated by the negative charge of the phosphate J. Biol. Chem. 262 1987 10422 10425
2. K. Miyazaki, H. Eguchi, A. Yamagishi, T. Wakagi, and T. Oshima Molecular cloning of the isocitrate dehydrogenase gene of an extreme thermophile, Thermus thermophilus HB8 Appl. Environ. Microbiol. 58 1992 93 98
3. R. Chen, and S.S. Jeong Functional prediction: identification of protein orthologs and paralogs Protein Sci. 9 2000 2344 2353
4. J.H. Hurley, P.E. Thorsness, V. Ramalingam, N.H. Helmers, D.E. Koshland Jr., and R.M. Stroud Structure of a bacterial enzyme regulated by phosphorylation, isocitrate dehydrogenase Proc. Natl. Acad. Sci. USA 86 1989 8635 8639
5. K. Imada, M. Sato, N. Tanaka, Y. Katsube, Y. Matsuura, and T. Oshima Three-dimensional structure of a highly thermostable enzyme, 3-isopropylmalate dehydrogenase of Thermus thermophilus at 2.2 Å resolution J. Mol. Biol. 222 1991 725 738
6. Y. Kawarabayasi, M. Sawada, H. Horikawa, Y. Haikawa, Y. Hino, S. Yamamoto, M. Sekine, S. Baba, H. Kosugi, A. Hosoyama, Y. Nagai, M. Sakai, K. Ogura, R. Otsuka, H. Nakazawa, M. Takamiya, Y. Ohfuku, T. Funahashi, T. Tanaka, Y. Kudoh, J. Yamazaki, N. Kushida, A. Oguchi, K. Aoki, and H. Kikuchi Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3 DNA Res. 5 1998 55 76
7. J.M. Gonzalez, Y. Masuchi, F.T. Robb, J.W. Ammerman, D.L. Maeder, M. Yanagibayashi, J. Tamaoka, and C. Kato Pyrococcus horikoshii sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal vent at the Okinawa Trough Extremophiles 2 1998 123 130
8. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
9. F.W. Studier, and B.A. Moffatt Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes J. Mol. Biol. 189 1986 113 130
10. K. Miyazaki, and T. Oshima Co-enzyme specificity of 3-isopropylmalate dehydrogenase from Thermus thermophilus HB8 Protein Eng. 7 1994 401 403
11. T. Yaoi, K. Miyazaki, T. Oshima, Y. Komukai, and M. Go Conversion of the coenzyme specificity of isocitrate dehydrogenase by module replacement J. Biochem. 119 1996 1014 1018
12. H. Nishida, M. Nishiyama, N. Kobashi, T. Kosuge, T. Hoshino, and H. Yamane A prokaryotic gene cluster involved in synthesis of lysine through the amino adipate pathway: a key to the evolution of amino acid biosynthesis Genome Res. 9 1999 1175 1183
13. J. Miyazaki, N. Kobashi, M. Nishiyama, and H. Yamane Characterization of homoisocitrate dehydrogenase involved in lysine biosynthesis of an extremely thermophilic bacterium, Thermus thermophilus HB27, and evolutionary implication of β-decarboxylating dehydrogenase J. Biol. Chem. 278 2003 1864 1871
14. D.M. Howell, M. Graupner, H. Xu, and R.H. White Dentification of enzymes homologous to isocitrate dehydrogenase that are involved in coenzyme B and leucine biosynthesis in methanoarchaea J. Bacteriol. 182 2000 5013 5016
15. Y. Yasutake, M. Yao, N. Sakai, T. Kirita, and I. Tanaka Crystal structure of the Pyrococcus horikoshii isopropylmalate isomerase small subunit provides insight into the dual substrate specificity of the enzyme J. Mol. Biol. 344 2004 325 333
16. T. Lombo, N. Takaya, J. Miyazaki, K. Gotoh, M. Nishiyama, T. Kosuge, A. Nakamura, and T. Hoshino Functional analysis of the small subunit of the putative homoaconitase from Pyrococcus horikoshii in the Thermus lysine biosynthetic pathway FEMS Microbiol. Lett. 233 2004 315 324
17. M.W. Bauer, E.J. Bylina, R.V. Swanson, and R.M. Kelly Comparison of a β-glucosidase and a β-mannosidase from the hyperthermophilic archaeon Pyrococcus furiosus. Purification, characterization, gene cloning, and sequence analysis J. Biol. Chem. 271 1996 23749 23755
18. V. Durbecq, C. Legrain, M. Roovers, A. Pierard, and N. Glansdorff The carbamate kinase-like carbamoyl phosphate synthetase of the hyperthermophilic archaeon Pyrococcus furiosus, a missing link in the evolution of carbamoyl phosphate biosynthesis Proc. Natl. Acad. Sci. USA 94 1997 12803 12808
19. I. Matsui, E. Matsui, Y. Sakai, H. Kikuchi, Y. Kawarabayasi, H. Ura, S. Kawaguchi, S. Kuramitsu, and K. Harata The molecular structure of hyperthermostable aromatic aminotransferase with novel substrate specificity from Pyrococcus horikoshii J. Biol. Chem. 275 2000 4871 4879
20. K. Ishikawa, H. Ishida, I. Matsui, Y. Kawarabayasi, and H. Kikuchi Novel bifunctional hyperthermostable carboxypeptidase/aminoacylase from Pyrococcus horikoshii OT3 Appl. Environ. Microbiol. 67 2001 673 679