Evaluating dosage compensation as a cause of duplicate gene retention in Paramecium tetraurelia

Genome Biology

Volumn 8, Issue 5, 2007, Pages

  Hughes, Timothy ^a   Ekman, Diana ^b   Ardawatia, Himanshu ^a,c   Elofsson, Arne ^b   Liberles, David A ^c  

^a UNIVERSITY OF BERGEN   (Norway)

^b STOCKHOLM UNIVERSITY   (Sweden)

^c UNIVERSITY OF WYOMING   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SACCHAROMYCES CEREVISIAE PROTEIN; TRANSCRIPTION FACTOR;

CONTROLLED STUDY; GENE DUPLICATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE LOCUS; GENETIC CONSERVATION; GENETIC SELECTION; MOLECULAR BIOLOGY; MOLECULAR EVOLUTION; NONHUMAN; PARAMECIUM TETRAURELIA; POPULATION GENETICS; POPULATION SIZE; PROTEIN PROTEIN INTERACTION; SHORT SURVEY; SIGNAL TRANSDUCTION; ANIMAL; GENETICS; GENOME; REVIEW; SYSTEMS BIOLOGY;

PARAMECIUM TETRAURELIA;

ANIMALS; DOSAGE COMPENSATION, GENETIC; GENE DUPLICATION; GENETICS, POPULATION; GENOME, PROTOZOAN; PARAMECIUM TETRAURELIA; SYSTEMS BIOLOGY;

EID: 34548831118     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2007-8-5-213     Document Type: Short Survey

References (20)

1. Aury J-M Jaillon O Duret L Noel B Jubin C Porcel BM Ségurens B Daubin V Anthouard V Aiach N et al Global trends of whole genome duplications revealed by the ciliate Paramecium tetraurelia. Nature 2006 444 171-178 10.1038/nature05230 17086204
2. Wagner A Energy constraints on the evolution of gene expression. Mol Biol Evol 2005 22 1365-1374 10.1093/molbev/msi126 15758206
3. Rastogi S Liberles DA Subfunctionalization of duplicated genes as a transition state to neofunctionalization. BMC Evol Biol 2005 5 28 1112588 15831095 10.1186/1471-2148-5-28
4. Force A Lynch M Pickett FB Amores A Yan YL Postlethwait J Preservation of duplicate genes by complementary, degenerative mutations. Genetics 1999 151 1531-1545 1460548 10101175
5. Ohno S Evolution by Gene Duplication New York: Springer-Verlag 1970
6. Kuepfer L Sauer U Blank LM Metabolic functions of duplicate genes in Saccharomyces cerevisiae. Genome Res 2005 15 1421-1430 1240085 16204195 10.1101/gr.3992505
7. Withers M Wernisch L dos Reis M Archaeology and evolution of transfer RNA genes in the Escherichia coli genome. RNA 2006 12 933-942 1464854 16618964 10.1261/rna.2272306
8. Lynch M Conery JS The evolutionary fate and consequences of duplicate genes. Science 2000 290 1151-1155 10.1126/science.290.5494.1151 11073452
9. Lynch M Conery JS The origins of genome complexity. Science 2003 302 1401-1404 10.1126/science.1089370 14631042
10. Hughes MK Hughes AL Evolution of duplicate genes in a tetraploid animal, Xenopus laevis. Mol Biol Evol 1993 10 1360-1369 8277859
11. Blomme T Vandepoele K de Bodt S Simillion C Maere S van de Peer Y The gain and loss of genes during 600 million years of vertebrate evolution. Genome Biol 2006 7 R43 1779523 16723033 10.1186/gb-2006-7-5-r43
12. Orr HA Dobzhansky, Bateson, and the genetics of speciation. Genetics 1996 144 1331-1335 1207686 8978022
13. Snoke MS Berendonk TU Barth D Lynch M Large global effective population sizes in Paramecium. Mol Biol Evol 2006 23 2474-2479 10.1093/molbev/ msl128 16987953
14. Braun FN Liberles DA Retention of enzyme gene duplicates by subfunctionalization. Int J Biol Macromol 2003 33 19-22 10.1016/ S0141-8130(03)00059-X 14599579
15. Ekman D Light S Bjorkman AK Elofsson A What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae? Genome Biol 2006 7 R45 1779539 16780599 10.1186/ gb-2006-7-6-r45
16. Papp B Pal C Hurst LD Dosage sensitivity and the evolution of gene families in yeast. Nature 2003 424 194-197 10.1038/nature01771 12853957
17. Pereira-Leal JB Teichmann SA Novel specificities emerge by stepwise duplication of functional modules. Genome Res 2005 15 552-559 1074369 15805495 10.1101/gr.3102105
18. Vitkup D Kharchenko P Wagner A Influence of metabolic network structure and function on enzyme evolution. Genome Biol 2006 7 R39 1779518 16684370 10.1186/gb-2006-7-5-r39
19. Salvador A Savageau MA Evolution of enzymes in a series is driven by dissimilar functional demands. Proc Natl Acad Sci USA 2006 103 2226-2231 1413729 16461898 10.1073/pnas.0510776103
20. Soyer OS Bonhoeffer S Evolution of complexity in signaling pathways. Proc Natl Acad Sci USA 2006 103 16337-16342 1621048 17060629 10.1073/ pnas.0604449103