Subfunctionalization of duplicated genes as a transition state to neofunctionalization

BMC Evolutionary Biology

Volumn 5, Issue , 2005, Pages

  Rastogi, Shruti ^a   Liberles, David A ^a  

^a UNIVERSITY OF BERGEN   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

LIGAND; PEPTIDE; PROTEIN BINDING;

ANIMAL; BIOLOGICAL MODEL; BIOLOGY; CHEMISTRY; GENE DUPLICATION; GENETIC RECOMBINATION; GENOME; HAPLOIDY; HUMAN; MOLECULAR EVOLUTION; POPULATION GENETICS; PROCEDURES; STATISTICAL MODEL;

ANIMALS; COMPUTATIONAL BIOLOGY; EVOLUTION, MOLECULAR; GENE DUPLICATION; GENETICS, POPULATION; GENOME; HAPLOIDY; HUMANS; LIGANDS; MODELS, GENETIC; MODELS, STATISTICAL; PEPTIDES; PROTEIN BINDING; RECOMBINATION, GENETIC;

EID: 21344439563     PISSN: 14712148     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2148-5-28     Document Type: Article

References (15)

1. Ohno S: Evolution by Gene Duplication. New York: Springer-Verlag; 1970.
2. Lynch M, O'Hely M, Walsh B, Force A: The probability of preservation of a newly arisen gene duplicate. Genetics 2001, 159:1789-1804.
3. Eichler EE, Sankoff D: Structural dynamics of eukaryotic chromosome evolution. Science 2003, 301:793-797.
4. McLysaght A, Hokamp K, Wolfe KH: Extensive genomic duplication during early chordate evolution. Nat Genet 2002, 31:200-204.
5. Gu X, Wang Y, Gu J: Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution. Nat Genet 2002, 31:205-209.
6. Lynch M, Conery JS: On the origin of genome complexity. Science 2003, 302:1401-1404.
7. Liberles DA, Schreiber DR, Govindarajan S, Chamberlin SG, Benner SA: The Adaptive Evolution Database (TAED). Genome Biology 2001, 2(8):research0028.1- 0028.6.
8. Fay JC, Wyckoff GJ, Wu CI: Positive and negative selection on the human genome. Genetics 2001, 158:1227-1234.
9. Bastolla U, Porto M, Roman HE, Vendruscolo M: Statistical properties of neutral evolution. J Mol Evol 2003, 57:S103-S119.
10. Taverna DM, Goldstein RA: Why are proteins marginally stable? Proteins 2002, 46:105-109.
11. Tiana G, Shakhnovich BE, Dokholyan NV, Shakhnovich EI: Imprint of evolution on protein structures. Proc Natl Acad Sci, USA 2004, 101:2846-2851.
12. Williams PD, Pollock DD, Goldstein RA: Evolution of functionality in lattice proteins. J Mol Graph Model 2001, 19:150-156.
13. Braun FN, Liberles DA: Retention of enzyme gene duplicates by subfunctionalization. Int J Biol Macromol 2003, 33:19-22.
14. Miyazawa S, Jernigan RL: Estimation of effective interresidue contact energies from protein crystal structures- Quasichemical approximation. Macromol 1985, 18:534-552.
15. Nei M: Molecular Evolutionary Genetics. New York: Columbia University Press; 1987.