Comparative chromosome painting map between two Ryukyu spiny rat species, Tokudaia osimensis and Tokudaia tokunoshimensis (Muridae, Rodentia)

Chromosome Research

Volumn 15, Issue 6, 2007, Pages 799-806

  Nakamura, Taro ^a   Kuroiwa, Asato ^a   Nishida Umehara, Chizuko ^a   Matsubara, Kazumi ^a   Yamada, Fumio ^b   Matsuda, Yoichi ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b FORESTRY AND FOREST PRODUCTS RESEARCH INSTITUTE   (Japan)

Author keywords

Chromosome painting; Homology; Karyotype evolution; Muridae; Spiny rat; Tokudaia

Indexed keywords

DNA;

ARTICLE; CHROMOSOME ANALYSIS; CHROMOSOME MAP; CHROMOSOME PAINTING; CHROMOSOME REARRANGEMENT; KARYOTYPE; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; RAT; SEX CHROMOSOME; SPECIES IDENTIFICATION; TOKUDAIA OSIMENSIS; TOKUDAIA TOKUNOSHIMENSIS;

ANIMALS; CHROMOSOME BANDING; CHROMOSOME MAPPING; CHROMOSOME PAINTING; CHROMOSOMES; DIPLOIDY; DNA; KARYOTYPING; MICE; MURIDAE; MURINAE; RATS; RODENTIA; SPECIES SPECIFICITY;

APODEMUS; MURIDAE; MUS MUSCULUS; RATTUS; RODENTIA; TOKUDAIA; TOKUDAIA OSIMENSIS;

EID: 34548671002     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-007-1163-9     Document Type: Article

References (30)

1. Arakawa Y, Nishida-Umehara C, Matsuda Y, Sutou S, Suzuki H (2002) X-chromosomal localization of mammalian Y-linked genes in two XO species of the Ryukyu spiny rat. Cytogenet Genome Res 99: 303-309.
2. Carbone L, Nergadze SG, Magnani E et al. (2006) Evolutionary movement of centromeres in horse, donkey, and zebra. Genomics 87: 777-782.
3. Cavagna P, Stone G, Stanyon R (2002) Black rat (Rattus rattus) genomic variability characterized by chromosome painting. Mamm Genome 13: 157-163.
4. Eder V, Ventura M, Ianigro M, Teti M, Rocchi M, Archidiacono N (2003) Chromosome 6 phylogeny in primates and centromere repositioning. Mol Biol Evol 20: 1506-1512.
5. Engelbrecht A, Dobigny G, Robinson TJ (2006) Further insights into the ancestral murine karyotype: the contribution of the Otomys-Mus comparison using chromosome painting. Cytogenet Genome Res 112: 126-130.
6. Endo H, Tsuchiya K (2006) A new species of Ryukyu spiny rat, Tokudaia (Muridae: Rodentia), from Tokunoshima Island, Kagoshima prefecture, Japan. Mamm Study 31: 47-57.
7. Ferreri GC, Liscinsky DM, Mack JA, Eldridge MDB, O'Neill RJ (2005) Retention of latent centromeres in the mammalian genome. J Hered 96: 217-224.
8. Grützner F, Himmelbauer H, Paulsen M, Ropers H-H, Haaf T (1999) Comparative mapping of mouse and rat chromosomes by fluorescence in situ hybridization. Genomics 55: 306-313.
9. Guilly M-N, Fouchet P, de Chamisso P, Schmitz A, Dutrillaux B (1999) Comparative karyotype of rat and mouse using bidirectional chromosome painting. Chromosome Res 7: 213-221.
10. Honda T, Suzuki H, Itoh M (1977) An unusual sex chromosome constitution found in the Amami spinous country-rat, Tokudaia osimensis osimensis. Jpn J Genet 52: 247-249.
11. Honda T, Suzuki H, Itoh M, Hayashi K (1978) Karyotypical differences of the Amami spinous country-rats, Tokudaia osimensis osimensis obtained from two neighbouring islands. Jpn J Genet 53: 297-299.
12. Johnson DH (1946) The spiny rat of the Riu Kiu islands. Proc Biol Soc Washington 59: 169-172.
13. Kobayashi T, Yamada F, Hashimoto T, Abe S, Matsuda Y, Kuroiwa A (2007) Exceptional minute sex-specific region in the X0 mammal, Ryukyu spiny rat. Chromosome Res 15: 175-187.
14. Matsubara K, Nishida-Umehara C, Kuroiwa A, Tsuchiya K, Matsuda Y (2003) Identification of chromosome rearrangements between the laboratory mouse (Mus musculus) and the Indian spiny mouse (Mus platythrix) by comparative FISH analysis. Chromosome Res 11: 57-64.
15. Matsubara K, Nishida-Umehara C, Tsuchiya K, Nukaya D, Matsuda Y (2004) Karyotypic evolution of Apodemus (Muridae, Rodentia) inferred from comparative FISH analyses. Chromosome Res 12: 383-395.
16. Matsuda Y, Chapman VM (1995) Application of fluorescence in situ hybridization in genome analysis of the mouse. Electrophoresis 16: 261-272.
17. Matsuda Y, Harada YN, Natsuume-Sakaki S, Lee K, Shiomi T, Chapman VM (1992) Location of the mouse complement factor H gene (cfh) by FISH analysis and replication R-banding. Cytogenet Cell Genet 61: 282-285.
18. Michaux JR, Chevret P, Filippucci M-G, Macholan M (2002) Phylogeny of the genus Apodemus with a special emphasis on the subgenus Sylvaemus using the nuclear IRBP gene and two mitochondrial markers: cytochrome b and 12S rRNA. Mol Phylogenet Evol 23: 123-136.
19. Rambau RV, Robinson TJ (2003) Chromosome painting in the African four-striped mouse Rhabdomys pumilio: detection of possible murid specific contiguous segment combinations. Chromosome Res 11: 91-98.
20. Sato JJ, Suzuki H (2004) Phylogenetic relationships and divergence times of the genus Tokudaia within Murinae (Muridae; Rodentia) inferred from the nucleotide sequences encoding the Cytb gene, RAG1, and IRBP. Can J Zool 82: 1343-1351.
21. Soullier S, Hanni C, Catzeflis F, Berta P, Laudet V (1998) Male sex determination in the spiny rat Tokudaia osimensis (Rodentia: Muridae) is not Sry dependent. Mamm Genome 9: 590-592.
22. Stanyon R, Yang F, Cavagna P et al. (1999) Reciprocal chromosome painting shows that genomic rearrangement between rat and mouse proceeds ten times faster than between humans and cats. Cytogenet Cell Genet 84: 150-155.
23. Stanyon R, Yang F, Morescalchi AM, Galleni L (2004) Chromosome painting in the long-tailed field mouse provides insights into the ancestral murid karyotype. Cytogenet Genome Res 105: 406-411.
24. Sutou S, Mitsui Y, Tsuchiya K (2001) Sex determination without the Y chromosome in two Japanese rodents Tokudaia osimensis osimensis and Tokudaia osimensis spp. Mamm Genome 12: 17-21.
25. Suzuki H, Iwasa MA, Ishii N, Nagaoka H, Tsuchiya K (1999) The genetic status of two insular populations of the endemic spiny rat Tokudaia osimensis (Rodentia, Muridae) of the Ryukyu Islands, Japan. Mamm Study 24: 43-50.
26. Suzuki H, Tsuchiya K, Takezaki N (2000) A molecular phylogenetic framework for the Ryukyu endemic rodents Tokudaia osimensis and Diplothrix legata. Mol Phylogenet Evol 15: 15-24.
27. Suzuki H, Sato JJ, Tsuchiya K et al. (2003) Molecular phylogeny of wood mice (Apodemus, Muridae) in East Asia. Biol J Linn Soc 80: 469-481.
28. Tsuchiya K, Wakana S, Suzuki H, Hattori S, Hayashi Y (1989) Taxonomic study of Tokudaia (Rodentia: Muridae): I. Genetic differentiation. Mem Natl Sci Museum, Tokyo 22: 227-234 [in Japanese with English abstract].
29. Ventura M, Archidiacono N, Rocchi M (2001) Centromere emergence in evolution. Genome Res 11: 595-599.
30. Yang F, O'Brien PCM, Ferguson-Smith MA (2000) Comparative chromosome map of the laboratory mouse and Chinese hamster defined by reciprocal chromosome painting. Chromosome Res 8: 219-227.