DtiStudio: Resource program for diffusion tensor computation and fiber bundle tracking

Computer Methods and Programs in Biomedicine

Volumn 81, Issue 2, 2006, Pages 106-116

  Jiang, Hangyi ^a,b   Van Zijl, Peter C M ^a,b   Kim, Jinsuh ^c,d   Pearlson, Godfrey D ^c,d   Mori, Susumu ^a,b  

^a JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b KENNEDY KRIEGER INSTITUTE   (United States)

^c INSTITUTE OF LIVING   (United States)

^d YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Diffusion tensor imaging; Fiber tractography; Magnetic resonance imaging (MRI); Medical image visualization

Indexed keywords

ALGORITHMS; COMPUTATIONAL METHODS; COMPUTER SOFTWARE; DATA STORAGE EQUIPMENT; MAGNETIC RESONANCE IMAGING; MEDICAL IMAGING; RESOURCE ALLOCATION;

DIFFUSION TENSOR IMAGING; FIBER TRACTOGRAPHY; MEDICAL IMAGE VISUALIZATION; MR SCANNERS;

TENSORS;

ANISOTROPY; ARTICLE; COMPUTER PROGRAM; DATA ANALYSIS; DIFFUSION TENSOR IMAGING; FIBER; INFORMATION PROCESSING; MATHEMATICAL COMPUTING; NUCLEAR MAGNETIC RESONANCE IMAGING; THREE DIMENSIONAL IMAGING;

ALGORITHMS; DIFFUSION MAGNETIC RESONANCE IMAGING; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MEDIAL FOREBRAIN BUNDLE; MODELS, STATISTICAL; SOFTWARE; UNITED STATES;

EID: 31344441424     PISSN: 01692607     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cmpb.2005.08.004     Document Type: Article

References (23)

1. P.J. Basser, J. Mattiello, and D. LeBihan Estimation of the effective self-diffusion tensor from the NMR spin echo J. Magn. Reson. B 103 1994 247 254
2. S. Mori, B.J. Crain, V.P. Chacko, and P.C.M. van Zijl Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging Ann. Neurol. 45 2 1999 265 269
3. R. Xue, P.C.M. van Zijl, B.J. Crain, M. Solaiyappan, and S. Mori In vivo three-dimensional reconstruction of rat brain axonal projections by diffusion tensor imaging Magn. Reson. Med. 42 6 1999 1123 1127
4. T.E. Conturo, N.F. Lori, T.S. Cull, E. Akbudak, A.Z. Snyder, J.S. Shimony, R.C. McKinstry, H. Burton, and M.E. Raichle Tracking neuronal fiber pathways in the living human brain Proc. Natl. Acad. Sci. U.S.A. Appl. Phys. Sci., Neurobiol. 96 18 1999 10422 10427
5. D.K. Jones, A. Simmons, S.C.R. Williams, and M.A. Horsfield Non-invasive assessment of axonal fiber connectivity in the human brain via diffusion tensor MRI Magn. Reson. Med. 42 1 1999 37 41
6. P.J. Basser, S. Pajevic, C. Pierpaoli, J. Duda, and A. Aldroubi In vivo fiber tractography using DT-MRI data Magn. Reson. Med. 44 4 2000 625 632
7. S. Mori, W. Kaufmann, C. Davatzikos, B. Stieltjes, L. Amodei, K. Fredericksen, G. Pearlson, E. Melhem, M. Solaiyappan, G. Raymond, H. Moser, and P. van Zijl Imaging cortical association tracts in the human brain using diffusion-tensor-based axonal tracking Magn. Reson. Med. 47 2 2002 215 223
8. C. Poupon, C.A. Clark, V. Frouin, J. Regis, I. Bloch, D. Le Bihan, and J.-F. Mangin Regularization of diffusion-based direction maps for the tracking of brain white matter fascicles NeuroImage 12 2 2000 184 195
9. B. Stieltjes, W.E. Kaufmann, P.C.M. van Zijl, K. Fredericksen, G.D. Pearlson, M. Solaiyappan, and S. Mori Diffusion tensor imaging and axonal tracking in the human brainstem NeuroImage 14 2001 723 735
10. R.P. Woods, S.T. Grafton, C.J. Holmes, S.R. Cherry, and J.C. Mazziotta Automated image registration. I. General methods and intrasubject, intramodality validation J. Comput. Assist. Tomogr. 22 1998 139 152
11. R.J. Ordidge, J.A. Helpern, Z.X. Qing, R.A. Knight, and V. Nagesh Correction of motional artifacts in diffusion-weighted NMR images using navigator echoes Magn. Reson. Imag. 12 1994 455 460
12. K. Butts, A. de Crespigny, J.M. Pauly, and M. Moseley Diffusion-weighted interleaved echo-planar imaging with a pair of orthogonal navigator echoes Magn. Reson. Med. 35 1996 763 770
13. D.G. Norris Implications of bulk motion for diffusion-weighted imaging experiments: effects, mechanisms, and solutions J. Magn. Reson. Imag. 13 2001 486 495
14. H. Jiang, X. Golay, P.C.M. van Zijl, and S. Mori Origin and minimization of residual motion-related artifacts in navigator-corrected segmented diffusion-weighted EPI of the human brain Magn. Reson. Med. 47 4 2002 818 822
15. E.O. Stejskal, and J.E. Tanner Spin diffusion measurements: spin echoes in the presence of a time-dependent field gradient J. Chem. Phys. 42 1965 184 195
16. P.J. Basser, J. Mattiello, and D. LeBihan MR diffusion tensor spectroscopy and imaging Biophys. J. 66 1 1994 259 267
17. D.K. Jones, M.A. Horsfield, and A. Simmons Optimal strategies for measuring diffusion in anisotropic systems by magnetic resonance imaging Magn. Reson. Med. 42 3 1999 515 525
18. S. Skare, M. Hedehus, M.E. Moseley, and T.-Q. Li Condition number as a measure of noise performance of diffusion tensor data acquisision schemes with MRI NeuroImage 147 2000 340 352
19. W.H. Press, S.A. Teukolsky, W.T. Vetterling, and B.P. Flannery Numerical Recipes in C 1992 Cambridge University Press
20. C. Pierpaoli, and P.J. Basser Toward a quantitative assessment of diffusion anisotropy Magn. Reson. Med. 36 1996 893 906
21. L.R. Frank Anisotropy in high angular resolution diffusion-weighted MRI Magn. Reson. Med. 45 2001 935 939
22. D.J. Werring, A.T. Toosy, C.A. Clark, G.J. Parker, G.J. Barker, D.H. Miller, and A.J. Thompson Diffusion tensor imaging can detect and quantify corticospinal tract degeneration after stroke J. Neurol. Neurosurg. Psychiatry 69 2000 269 272
23. M. Catani, R.J. Howard, S. Pajevic, and D.K. Jones Virtual in vivo interactive dissection of white matter fasciculi in the human brain NeuroImage 17 2002 77 94