-
1
-
-
3442884222
-
Gene expression of angiogenic factors correlates with metastatic potential of prostate cancer cells
-
Aalinkeel,R. et al. (2004) Gene expression of angiogenic factors correlates with metastatic potential of prostate cancer cells. Cancer Res., 64, 5311-5321.
-
(2004)
Cancer Res
, vol.64
, pp. 5311-5321
-
-
Aalinkeel, R.1
-
2
-
-
24744442616
-
Role of SRC-1 in the promotion of prostate cancer cell growth and tumor progression
-
Agoulnik,I.U. et al. (2005) Role of SRC-1 in the promotion of prostate cancer cell growth and tumor progression. Cancer Res., 65, 7959-7967.
-
(2005)
Cancer Res
, vol.65
, pp. 7959-7967
-
-
Agoulnik, I.U.1
-
3
-
-
34250217027
-
Constitutively activated Stat3 induces tumorigenesis and enhances cell motility of prostate epithelial cells through Integrin β6
-
Azare,J. et al. (2007) Constitutively activated Stat3 induces tumorigenesis and enhances cell motility of prostate epithelial cells through Integrin β6. Mol. Cell Biol., 27, 4444-4453.
-
(2007)
Mol. Cell Biol
, vol.27
, pp. 4444-4453
-
-
Azare, J.1
-
4
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
Barabasi,A.L. and Oltvai,Z.N. (2004) Network biology: Understanding the cell's functional organization. Nat. Rev. Genet. 5, 101-113.
-
(2004)
Nat. Rev. Genet
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
5
-
-
3042730316
-
A new enrichment approach identifies genes that alter cell cycle progression in Saccharomyces cerevisiae
-
Bogomolnaya,L.M. et al. (2004) A new enrichment approach identifies genes that alter cell cycle progression in Saccharomyces cerevisiae. Curr. Genet., 45, 350-359.
-
(2004)
Curr. Genet
, vol.45
, pp. 350-359
-
-
Bogomolnaya, L.M.1
-
6
-
-
39049189899
-
Mining Alzheimer disease relevant proteins from integrated protein interactome data
-
Chen,J.Y. et al. (2006) Mining Alzheimer disease relevant proteins from integrated protein interactome data. Pac. Symp. Biocomput., 11, 367-378.
-
(2006)
Pac. Symp. Biocomput
, vol.11
, pp. 367-378
-
-
Chen, J.Y.1
-
7
-
-
33751102108
-
c-Jun enhancement of androgen receptor transactivation is associated with prostate cancer cell proliferation
-
Chen,S.Y. et al. (2006) c-Jun enhancement of androgen receptor transactivation is associated with prostate cancer cell proliferation. Oncogene, 25, 7212-7223.
-
(2006)
Oncogene
, vol.25
, pp. 7212-7223
-
-
Chen, S.Y.1
-
8
-
-
13644252212
-
SRC family kinases in cell volume regulation
-
Cohen,D.M. (2005) SRC family kinases in cell volume regulation. Am. J. Physiol. Cell Physiol., 288, C483-C493.
-
(2005)
Am. J. Physiol. Cell Physiol
, vol.288
-
-
Cohen, D.M.1
-
9
-
-
5044232836
-
The androgen receptor co-activator CBP is up-regulated following androgen withdrawal and is highly expressed in advanced prostate cancer
-
Comuzzi,B. et al. (2004) The androgen receptor co-activator CBP is up-regulated following androgen withdrawal and is highly expressed in advanced prostate cancer. J. Pathol., 204, 159-166.
-
(2004)
J. Pathol
, vol.204
, pp. 159-166
-
-
Comuzzi, B.1
-
10
-
-
8844280894
-
Ribosome synthesis meets the cell cycle
-
Dez,C. and Tollervey,D. (2004) Ribosome synthesis meets the cell cycle. Curr. Opin. Microbiol., 7, 631-637.
-
(2004)
Curr. Opin. Microbiol
, vol.7
, pp. 631-637
-
-
Dez, C.1
Tollervey, D.2
-
11
-
-
0038494599
-
Unsupervised feature selection via two-way ordering in gene expression analysis
-
Ding,C.H. (2003) Unsupervised feature selection via two-way ordering in gene expression analysis. Bioinformatics, 19, 1259-1266.
-
(2003)
Bioinformatics
, vol.19
, pp. 1259-1266
-
-
Ding, C.H.1
-
12
-
-
4444333082
-
Functional characterization of Pwp2, a WD family protein essential for the assembly of the 90 S pre-ribosomal particle
-
Dosil,M. and Bustelo,X.R. (2004) Functional characterization of Pwp2, a WD family protein essential for the assembly of the 90 S pre-ribosomal particle. J. Biol. Chem., 279, 37385-37397.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 37385-37397
-
-
Dosil, M.1
Bustelo, X.R.2
-
13
-
-
0042121055
-
Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate
-
Draghici,S. et al. (2003) Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. Nucleic Acids Res., 31, 3775-3781.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3775-3781
-
-
Draghici, S.1
-
14
-
-
0037188922
-
Yph1p, an ORC-interacting protein: Potential links between cell proliferation control, DNA replication, and ribosome biogenesis
-
Du,Y.C. and Stillman,B. (2002) Yph1p, an ORC-interacting protein: potential links between cell proliferation control, DNA replication, and ribosome biogenesis. Cell, 109, 835-848.
-
(2002)
Cell
, vol.109
, pp. 835-848
-
-
Du, Y.C.1
Stillman, B.2
-
15
-
-
0038391443
-
Bagging to improve the accuracy of a clustering procedure
-
Dudoit,S. and Fridlyand,J. (2003) Bagging to improve the accuracy of a clustering procedure. Bioinformatics, 19, 1090-1099.
-
(2003)
Bioinformatics
, vol.19
, pp. 1090-1099
-
-
Dudoit, S.1
Fridlyand, J.2
-
16
-
-
20444368837
-
The androgen receptor and signal-transduction pathways in hormone-refractory prostate cancer. Part 2: Androgen-receptor cofactors and bypass pathways
-
Edwards,J. and Bartlett,J.M. (2005) The androgen receptor and signal-transduction pathways in hormone-refractory prostate cancer. Part 2: Androgen-receptor cofactors and bypass pathways. BJU Int., 95, 1327-1335.
-
(2005)
BJU Int
, vol.95
, pp. 1327-1335
-
-
Edwards, J.1
Bartlett, J.M.2
-
17
-
-
0035740002
-
Integrins and prostate cancer metastases
-
Fornaro,M. et al. (2001) Integrins and prostate cancer metastases. Cancer Metastasis Rev., 20, 321-331.
-
(2001)
Cancer Metastasis Rev
, vol.20
, pp. 321-331
-
-
Fornaro, M.1
-
18
-
-
33644617753
-
Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets
-
Gandhi,T.K. et al. (2006) Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets. Nat. Genet., 38, 285-293.
-
(2006)
Nat. Genet
, vol.38
, pp. 285-293
-
-
Gandhi, T.K.1
-
19
-
-
0043157958
-
Selenium compounds inhibit I kappa B kinase (IKK) and nuclear factor-kappa B (NF-kappa B) in prostate cancer cells
-
Gasparian,A.V. et al. (2002) Selenium compounds inhibit I kappa B kinase (IKK) and nuclear factor-kappa B (NF-kappa B) in prostate cancer cells. Mol. Cancer Ther., 1, 1079-1087.
-
(2002)
Mol. Cancer Ther
, vol.1
, pp. 1079-1087
-
-
Gasparian, A.V.1
-
20
-
-
0035733690
-
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
-
Ge,H. et al. (2001) Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nat. Genet. 29, 482-486.
-
(2001)
Nat. Genet
, vol.29
, pp. 482-486
-
-
Ge, H.1
-
21
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
Han,J.D. et al. (2004) Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 430, 88-93.
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.D.1
-
22
-
-
0346801873
-
The Gene Ontology (GO) database and informatics resource
-
Harris,M.A. et al. (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res., 32, D258-D261.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Harris, M.A.1
-
23
-
-
0036282857
-
Signaling inhibitors in the treatment of prostate cancer
-
Hudes,G.R. (2002) Signaling inhibitors in the treatment of prostate cancer. Invest New Drugs, 20, 159-172.
-
(2002)
Invest New Drugs
, vol.20
, pp. 159-172
-
-
Hudes, G.R.1
-
24
-
-
0000801240
-
Discovering regulatory and signalling circuits in molecular interaction networks
-
Ideker,T. et al. (2002) Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics, 18 (Suppl. 1), S233-S240.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Ideker, T.1
-
25
-
-
0036141992
-
Relating whole-genome expression data with protein-protein interactions
-
Jansen,R. et al. (2002) Relating whole-genome expression data with protein-protein interactions. Genome Res., 12, 37-46.
-
(2002)
Genome Res
, vol.12
, pp. 37-46
-
-
Jansen, R.1
-
26
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong,H. et al. (2001) Lethality and centrality in protein networks. Nature, 411, 41-42.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
-
27
-
-
26444479778
-
Optimization by Simulated Annealing
-
Kirkpatrick,S. et al. (1983) Optimization by Simulated Annealing. Science, 220, 671.
-
(1983)
Science
, vol.220
, pp. 671
-
-
Kirkpatrick, S.1
-
28
-
-
9144251970
-
Gene expression profiling identifies clinically relevant subtypes of prostate cancer
-
Lapointe,J. et al. (2004) Gene expression profiling identifies clinically relevant subtypes of prostate cancer. Proc. Natl Acad. Sci. USA, 101, 811-816.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 811-816
-
-
Lapointe, J.1
-
29
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee,T.I. et al. (2002) Transcriptional regulatory networks in Saccharomyces cerevisiae. Science, 298, 799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
-
30
-
-
0037249538
-
PGDB: A curated and integrated database of genes related to the prostate
-
Li,L.C. et al. (2003) PGDB: A curated and integrated database of genes related to the prostate. Nucleic Acids Res., 31, 291-293.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 291-293
-
-
Li, L.C.1
-
31
-
-
14544270984
-
Cyclin specificity in the phosphorylation of cyclin-dependent kinase substrates
-
Loog,M. and Morgan,D.O. (2005) Cyclin specificity in the phosphorylation of cyclin-dependent kinase substrates. Nature, 434, 104-108.
-
(2005)
Nature
, vol.434
, pp. 104-108
-
-
Loog, M.1
Morgan, D.O.2
-
32
-
-
0037208166
-
TRANSFAC: Transcriptional regulation, from patterns to profiles
-
Matys,V. et al. (2003) TRANSFAC: Transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 374-378
-
-
Matys, V.1
-
33
-
-
0031737085
-
Regulation of Cdc28 cyclin-dependent protein kinase activity during the cell cycle of the yeast Saccharomyces cerevisiae
-
Mendenhall,M.D. and Hodge,A.E. (1998) Regulation of Cdc28 cyclin-dependent protein kinase activity during the cell cycle of the yeast Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev., 62 1191-1243.
-
(1998)
Microbiol. Mol. Biol. Rev
, vol.62
, pp. 1191-1243
-
-
Mendenhall, M.D.1
Hodge, A.E.2
-
34
-
-
20844440723
-
Identification of coexpressed gene clusters in a comparative analysis of transcriptome and proteome in mouse tissues
-
Mijalski,T. et al. (2005) Identification of coexpressed gene clusters in a comparative analysis of transcriptome and proteome in mouse tissues. Proc. Natl. Acad Sci. USA, 102, 8621-8626.
-
(2005)
Proc. Natl. Acad Sci. USA
, vol.102
, pp. 8621-8626
-
-
Mijalski, T.1
-
35
-
-
20344390516
-
Prostate cancer risk and IRS1, IRS2, IGF1, and INS polymorphisms: Strong association of IRS1 G972R variant and cancer risk
-
Neuhausen,S.L. et al. (2005) Prostate cancer risk and IRS1, IRS2, IGF1, and INS polymorphisms: Strong association of IRS1 G972R variant and cancer risk. Prostate, 64, 168-174.
-
(2005)
Prostate
, vol.64
, pp. 168-174
-
-
Neuhausen, S.L.1
-
36
-
-
0345732685
-
Yeast Nop15p is an RNA-binding protein required for pre-rRNA processing and cytokinesis
-
Oeffinger,M. and Tollervey,D. (2003) Yeast Nop15p is an RNA-binding protein required for pre-rRNA processing and cytokinesis. EMBO J., 22, 6573-6583.
-
(2003)
EMBO J
, vol.22
, pp. 6573-6583
-
-
Oeffinger, M.1
Tollervey, D.2
-
37
-
-
9144236198
-
Human protein reference database as a discovery resource for proteomics
-
Peri,S. et al. (2004) Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res., 32, D497-D501.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Peri, S.1
-
38
-
-
14644430468
-
Calculating the statistical significance of changes in pathway activity from gene expression data
-
Article
-
Rahnenfuhrer,J. et al. (2004) Calculating the statistical significance of changes in pathway activity from gene expression data. Stat. Appl. Gen. Mol. Biol., 3, Article 16.
-
(2004)
Stat. Appl. Gen. Mol. Biol
, vol.3
, pp. 16
-
-
Rahnenfuhrer, J.1
-
39
-
-
0347755535
-
The database of interacting proteins: 2004 update
-
Salwinski,L. et al. (2004) The database of interacting proteins: 2004 update. Nucleic Acids Res., 32, D449-D451.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Salwinski, L.1
-
40
-
-
20844436318
-
Identifying regulatory subnetworks for a set of genes
-
Scott,M.S. et al. (2005) Identifying regulatory subnetworks for a set of genes. Mol. Cell Proteomics, 4, 683-692.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 683-692
-
-
Scott, M.S.1
-
41
-
-
0842309161
-
Discovering molecular pathways from protein interaction and gene expression data
-
Segal,E. et al. (2003) Discovering molecular pathways from protein interaction and gene expression data. Bioinformatics, 19 (Suppl. 1), i264-i271.
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Segal, E.1
-
42
-
-
0029904482
-
PWP2, a member of the WD-repeat family of proteins, is an essential Saccharomyces cerevisiae gene involved in cell separation
-
Shafaatian,R. et al. (1996) PWP2, a member of the WD-repeat family of proteins, is an essential Saccharomyces cerevisiae gene involved in cell separation. Mol. Gen. Genet., 252, 101-114.
-
(1996)
Mol. Gen. Genet
, vol.252
, pp. 101-114
-
-
Shafaatian, R.1
-
43
-
-
0031079828
-
Mini review: Mitosis and the spindle pole body in Saccharomyces cerevisiae
-
Sobel,S.G. (1997) Mini review: Mitosis and the spindle pole body in Saccharomyces cerevisiae. J. Exp. Zool., 277, 120-138.
-
(1997)
J. Exp. Zool
, vol.277
, pp. 120-138
-
-
Sobel, S.G.1
-
44
-
-
3142706495
-
New methods for joint analysis of biological networks and expression data
-
Sohler,F. et al. (2004) New methods for joint analysis of biological networks and expression data. Bioinformatics, 20, 1517-1521.
-
(2004)
Bioinformatics
, vol.20
, pp. 1517-1521
-
-
Sohler, F.1
-
45
-
-
34548594428
-
-
Sorensen,K.D. et al. (2006) Identification of FYN kinase as a new tumor suppressor in prostate cancer. AACR Meet. Abstr., 2006 611-a.
-
Sorensen,K.D. et al. (2006) Identification of FYN kinase as a new tumor suppressor in prostate cancer. AACR Meet. Abstr., 2006 611-a.
-
-
-
-
46
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman,P.T. et al. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell, 9, 3273-3297.
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
-
47
-
-
0142059836
-
Protein complexes and functional modules in molecular networks
-
Spirin,V. and Mirny,L.A. (2003) Protein complexes and functional modules in molecular networks. Proc. Natl Acad. Sci. USA, 100, 12123-12128.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 12123-12128
-
-
Spirin, V.1
Mirny, L.A.2
-
48
-
-
20044370089
-
Protein kinase C-{alpha} mediates epidermal growth factor receptor transactivation in human prostate cancer cells
-
Stewart,J.R. and O'Brian,C.A. (2005) Protein kinase C-{alpha} mediates epidermal growth factor receptor transactivation in human prostate cancer cells. Mol. Cancer Ther., 4, 726-732.
-
(2005)
Mol. Cancer Ther
, vol.4
, pp. 726-732
-
-
Stewart, J.R.1
O'Brian, C.A.2
-
49
-
-
1542357674
-
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data
-
Tanay,A. et al. (2004) Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data. Proc. Natl Acad. Sci. USA, 101 2981-2986.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 2981-2986
-
-
Tanay, A.1
-
50
-
-
0242300176
-
Targets of the cyclin-dependent kinase Cdk1
-
Ubersax,J.A. et al. (2003) Targets of the cyclin-dependent kinase Cdk1. Nature, 425, 859-864.
-
(2003)
Nature
, vol.425
, pp. 859-864
-
-
Ubersax, J.A.1
-
51
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz,P. et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature, 403, 623-627.
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
-
52
-
-
33751358957
-
Effects of replacing the unreliable cDNA microarray measurements on the disease classification based on gene expression profiles and functional modules
-
Wang,D. et al. (2006) Effects of replacing the unreliable cDNA microarray measurements on the disease classification based on gene expression profiles and functional modules. Bioinformatics, 22 2883-2889.
-
(2006)
Bioinformatics
, vol.22
, pp. 2883-2889
-
-
Wang, D.1
-
53
-
-
14544268984
-
Cell cycle: Cyclin guides the way
-
Wittenberg,C. (2005) Cell cycle: Cyclin guides the way. Nature, 434, 34-35.
-
(2005)
Nature
, vol.434
, pp. 34-35
-
-
Wittenberg, C.1
-
54
-
-
33751017706
-
Discovering disease-genes by topological features in human protein-protein interaction network
-
Xu,J. and Li,Y. (2006) Discovering disease-genes by topological features in human protein-protein interaction network. Bioinformatics, 22, 2800-2805.
-
(2006)
Bioinformatics
, vol.22
, pp. 2800-2805
-
-
Xu, J.1
Li, Y.2
-
55
-
-
33746471631
-
Peeling off the hidden genetic heterogeneities of cancers based on disease-relevant functional modules
-
Xu,J.Z. et al. (2006) Peeling off the hidden genetic heterogeneities of cancers based on disease-relevant functional modules. Mol. Med., 12, 25-33.
-
(2006)
Mol. Med
, vol.12
, pp. 25-33
-
-
Xu, J.Z.1
-
56
-
-
33750511727
-
A survey of essential gene function in the yeast cell division cycle
-
Yu,L. et al. (2006) A survey of essential gene function in the yeast cell division cycle. Mol. Biol. Cell, 17, 4736-4747.
-
(2006)
Mol. Biol. Cell
, vol.17
, pp. 4736-4747
-
-
Yu, L.1
-
57
-
-
0034564487
-
Analysis of gene expression data with pathway scores
-
Zien,A. et al. (2000) Analysis of gene expression data with pathway scores. Proc. Int. Conf. Intell. Syst. Mol. Biol., 8 407-417.
-
(2000)
Proc. Int. Conf. Intell. Syst. Mol. Biol
, vol.8
, pp. 407-417
-
-
Zien, A.1
|