The biologically relevant targets and binding affinity requirements for the function of the yeast actin-binding protein 1 Src-homology 3 domain vary with genetic context

Genetics

Volumn 176, Issue 1, 2007, Pages 193-208

  Haynes, Jennifer ^a   Garcia, Bianca ^a   Stollar, Elliott J ^a,c   Rath, Arianna ^a   Andrews, Brenda J ^a,b   Davidson, Alan R ^a  

^a UNIVERSITY OF TORONTO   (Canada)

^b UNIVERSITY OF TORONTO   (Canada)

^c HOSPITAL FOR SICK CHILDREN   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIN BINDING PROTEIN; ACTIN BINDING PROTEIN 1; PROTEIN SH3; UNCLASSIFIED DRUG; ABP1 PROTEIN, S CEREVISIAE; ACTIN; FIMBRIN; MEMBRANE PROTEIN; MUTANT PROTEIN; PRK1 PROTEIN, S CEREVISIAE; PROTEIN SERINE THREONINE KINASE; SACCHAROMYCES CEREVISIAE PROTEIN;

ARTICLE; BINDING AFFINITY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; BIOLOGICAL MODEL; CHEMISTRY; CYTOLOGY; CYTOSKELETON; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIAL VIABILITY; MOLECULAR GENETICS; PROTEIN TRANSPORT; SACCHAROMYCES CEREVISIAE; SRC HOMOLOGY DOMAIN; STRUCTURE ACTIVITY RELATION;

ACTINS; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; CYTOSKELETON; MEMBRANE GLYCOPROTEINS; MICROBIAL VIABILITY; MICROFILAMENT PROTEINS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; MUTANT PROTEINS; PROTEIN BINDING; PROTEIN TRANSPORT; PROTEIN-SERINE-THREONINE KINASES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SRC HOMOLOGY DOMAINS; STRUCTURE-ACTIVITY RELATIONSHIP;

EID: 34548548791     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.106.070300     Document Type: Article

References (48)

1. BACH, S., O. BOUCHAT, D. PORTETELLE and M. VANDENBOL, 2000 Co-deletion of the MSB3 and MSB4 coding regions affects bipolar budding and perturbs the organization of the actin cytoskeleton. Yeast 16: 1015-1023.
2. BELTRAO, P., and L. SERRANO, 2005 Comparative genomics and disorder prediction identify biologically relevant SH3 protein interactions. PLoS Comput. Biol. 1: e26.
3. BRACHMANN, C. B., A. DAVIES, G. J. COST, E. CAPUTO, J. LI et al., 1998 Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14: 115-132.
4. COPE, M. J., S. YANG, C. SHANG and D. G. DRUBIN, 1999 Novel protein kinases Ark1p and Prk1p associate with and regulate the cortical actin cytoskeleton in budding yeast. J. Cell Biol. 144: 1203-1218.
5. DRUBIN, D. G., 1990 Actin and actin-binding proteins in yeast. Cell Motil. Cytoskeleton 15: 7-11.
6. DRUBIN, D. G., K. G. MILLER and D. BOTSTEIN, 1988 Yeast actin-binding proteins: evidence for a role in morphogenesis. J. Cell Biol. 107: 2551-2561.
7. ENGQVIST-GOLDSTEIN, A. E., and D. G. DRUBIN, 2003 Actin assembly and endocytosis: from yeast to mammals. Annu. Rev. Cell Dev. Biol. 19: 287-332.
8. FAZI, B., M. J. COPE, A. DOUANGAMATH, S. FERRACUTI, K. SCHIRWITZ et al., 2002 Unusual binding properties of the SH3 domain of the yeast actin-binding protein Abp1: structural and functional analysis. J. Biol. Chem. 277: 5290-5298.
9. FRIESEN, H., K. MURPHY, A. BREITKREUTZ, M. TYERS and B. ANDREWS, 2003 Regulation of the yeast amphiphysin homologue Rvs167p by phosphorylation. Mol. Biol. Cell 14: 3027-3040.
10. FRIESEN, H., K. COLWILL, K. ROBERTSON, O. SCHUB and B. ANDREWS, 2005 Interaction of the Saccharomyces cerevisiae cortical actin patch protein Rvs167p with proteins involved in ER to Golgi vesicle trafficking. Genetics 170: 555-568.
11. GAVIN, A. C., M. BOSCHE, R. KRAUSE, P. GRANDI, M. MARZIOCH et al., 2002 Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141-147.
12. GOODE, B. L., A. A. RODAL, G. BARNES and D. G. DRUBIN, 2001 Activation of the Arp2/3 complex by the actin filament binding protein Abp1p. J. Cell Biol. 153: 627-634.
13. GOODMAN, A., B. L. GOODE, P. MATSUDAIRA and G. R. FINK, 2003 The Saccharomyces cerevisiae calponin/transgelin homolog Scp1 functions with fimbrin to regulate stability and organization of the actin cytoskeleton. Mol. Biol. Cell 14: 2617-2629.
14. GUTHRIE, C., and G. R. FINK, 1991 Guide to Yeast Genetics and Molecular Biology. Academic Press, San Diego.
15. HO, Y., A. GRUHLER, A. HEILBUT, G. D. BADER, L. MOORE et al., 2002 Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415: 180-183.
16. HOLTZMAN, D. A., S. YANG and D. G. DRUBIN, 1993 Synthetic-lethal interactions identify two novel genes, SLA1 and SLA2, that control membrane cytoskeleton assembly in Saccharomyces cerevisiae. J. Cell Biol. 122: 635-644.
17. KAKSONEN, M., Y. SUN and D. G. DRUBIN, 2003 A pathway for association of receptors, adaptors, and actin during endocytic internalization. Cell 115: 475-487.
18. KAKSONEN, M., C. P. TORET and D. G. DRUBIN, 2005 A modular design for the clathrin- and actin-mediated endocytosis machinery. Cell 123: 305-320.
19. LANDGRAF, C., S. PANNI, L. MONTECCHI- PALAZZI, L. CASTAGNOLI, J. SCHNEIDER-M ERGENER et al., 2004 Protein interaction networks by proteome peptide scanning. PLoS Biol. 2: E14.
20. LARSON, S. M., and A. R. DAVIDSON, 2000 The identification of conserved interactions within the SH3 domain by alignment of sequences and structures. Protein Sci. 9: 2170-2180.
21. LEE, J., K. COLWILL, V. ANELIUNAS, C. TENNYSON, L. MOORE et al., 1998 Interaction of yeast Rvs167 and Pho85 cyclin-dependent kinase complexes may link the cell cycle to the actin cytoskeleton. Curr. Biol. 8: 1310-1321.
22. LI, S., C. M. ARMSTRONG, N. BERTIN, H. GE, S. MILSTEIN et al., 2004 A map of the interactome network of the metazoan C. elegans. Science 303: 540-543.
23. LILA, T., and D. G. DRUBIN, 1997 Evidence for physical and functional interactions among two Saccharomyces cerevisiae SH3 domain proteins, an adenylyl cyclase-associated protein and the actin cytoskeleton. Mol. Biol. Cell 8: 367-385.
24. LONGTINE, M. S., A. MCKENZIE, III, D. J. DEMARINI, N. G. SHAH, A. WACH et al., 1998 Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14: 953-961.
25. MARCOUX, N., S. CLOUTIER, E. ZAKRZEWSKA, P. M. CHAREST, Y. BOURBONNAIS et al., 2000 Suppression of the profilin-deficient phenotype by the RHO2 signaling pathway in Saccharomyces cerevisiae. Genetics 156: 579-592.
26. MARLES, J. A., S. DAHESH, J. HAYNES, B. J. ANDREWS and A. R. DAVIDSON, 2004 Protein-protein interaction affinity plays a crucial role in controlling the sho1p-mediated signal transduction pathway in yeast. Mol. Cell 14: 813-823.
27. MATTILA, P. K., O. QUINTERO-MONZON, J. KUGLER, J. B. MOSELEY, S. C. ALMO et al., 2004 A high-affinity interaction with ADP-actin monomers underlies the mechanism and in vivo function of Srv2/cyclase-associated protein. Mol. Biol. Cell 15: 5158-5171.
28. MAYER, B. J., 2001 SH3 domains: complexity in moderation. J. Cell Sci. 114: 1253-1263.
29. MEASDAY, V., L. MOORE, J. OGAS, M. TYERS and B. ANDREWS, 1994 The PCL2 (ORFD)-PHO85 cyclin-dependent kinase complex: a cell cycle regulator in yeast. Science 266: 1391-1395.
30. MEASDAY, V., L. MOORE, R. RETNAKARAN, J. LEE, M. DONOVIEL et al., 1997 A family of cyclin-like proteins that interact with the Pho85 cyclin-dependent kinase. Mol. Cell. Biol. 17: 1212-1223.
31. MULHOLLAND, J., D. PREUSS, A. MOON, A. WONG, D. DRUBIN et al., 1994 Ultrastructure of the yeast actin cytoskeleton and its association with the plasma membrane. J. Cell Biol. 125: 381-391.
32. NEWPHER, T. M., R. P. SMITH, V. LEMMON and S. K. LEMMON, 2005 In vivo dynamics of clathrin and its adaptor-dependent recruitment to the actin-based endocytic machinery in yeast. Dev. Cell 9: 87-98.
33. OGAS, J., B. J. ANDREWS and I. HERSKOWITZ, 1991 Transcriptional activation of CLN1, CLN2, and a putative new G1 cyclin (HCS26) by SWI4, a positive regulator of G1-specific transcription. Cell 66: 1015-1026.
34. PARSONS, A. B., R. L. BROST, H. DING, Z. LI, C. ZHANG et al., 2004 Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways. Nat. Biotechnol. 22: 62-69.
35. PAWSON, T., and J. D. SCOTT, 1997 Signaling through scaffold, anchoring, and adaptor proteins. Science 278: 2075-2080.
36. RATH, A., and A. R. DAVIDSON, 2000 The design of a hyperstable mutant of the Abp1p SH3 domain by sequence alignment analysis. Protein Sci. 9: 2457-2469.
37. REN, R., B. J. MAYER, P. CICCHETTI and D. BALTIMORE, 1993 Identification of a ten-amino acid proline-rich SH3 binding site. Science 259: 1157-1161.
38. RUAL, J. F., K. VENKATESAN, T. HAO, T. HIROZANE-KISHIKAWA, A. DRICOT et al., 2005 Towards a proteome-scale map of the human protein-protein interaction network. Nature 437: 1173-1178.
39. SEKIYA-KAWASAKI, M., A. C. GROEN, M. J. COPE, M. KAKSONEN, H. A. WATSON et al., 2003 Dynamic phosphoregulation of the cortical actin cytoskeleton and endocytic machinery revealed by real-time chemical genetic analysis. J. Cell Biol. 162: 765-772.
40. SIKORSKI, R. S., and P. HIETER, 1989 A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27.
41. STEFAN, C. J., S. M. PADILLA, A. AUDHYA and S. D. EMR, 2005 The phosphoinositide phosphatase Sjl2 is recruited to cortical actin patches in the control of vesicle formation and fission during endocytosis. Mol. Cell. Biol. 25: 2910-2923.
42. TONG, A. H., M. EVANGELISTA, A. B. PARSONS, H. XU, G. D. BADER et al., 2001 Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science 294: 2364-2368.
43. TOSHIMA, J., J. Y. TOSHIMA, A. C. MARTIN and D. G. DRUBIN, 2005 Phosphoregulation of Arp2/3-dependent actin assembly during receptor-mediated endocytosis. Nat. Cell Biol. 7: 246-254.
44. WARREN, D. T., P. D. ANDREWS, C. W. GOURLAY and K. R. AYSCOUGH, 2002 Sla1p couples the yeast endocytic machinery to proteins regulating actin dynamics. J. Cell Sci. 115: 1703-1715.
45. WESP, A., L. HICKE, J. PALECEK, R. LOMBARDI, T. AUST et al., 1997 End4p/Sla2p interacts with actin-associated proteins for endocytosis in Saccharomyces cerevisiae. Mol. Biol. Cell 8: 2291-2306.
46. WINDER, S. J., T. JESS and K. R. AYSCOUGH, 2003 SCP1 encodes an actin-bundling protein in yeast. Biochem. J. 375: 287-295.
47. WINZELER, E. A., D. D. SHOEMAKER, A. ASTROMOFF, H. LIANG, K. ANDERSON et al., 1999 Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285: 901-906.
48. ZENG, G., X. YU and M. CAI, 2001 Regulation of yeast actin cytoskeleton-regulatory complex Pan1p/Sla1p/End3p by serine/threonine kinase Prk1p. Mol. Biol. Cell 12: 3759-3772.