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Volumn 23, Issue 16, 2007, Pages 2088-2095

Characterization of mismatch and high-signal intensity probes associated with Affymetrix genechips

Author keywords

[No Author keywords available]

Indexed keywords

CYTIDINE; NUCLEOTIDE; THYMIDINE;

EID: 34548546707     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm306     Document Type: Article
Times cited : (20)

References (17)
  • 1
    • 23244431990 scopus 로고    scopus 로고
    • Specific and nonspecific hybridization of oligonucleotide probes on microarrays
    • Binder,H. and Preibisch,S. (2005) Specific and nonspecific hybridization of oligonucleotide probes on microarrays. Biophys. J., 89, 337-352.
    • (2005) Biophys. J , vol.89 , pp. 337-352
    • Binder, H.1    Preibisch, S.2
  • 2
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad,B.M. et al. (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics, 19, 185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1
  • 3
    • 2642518682 scopus 로고    scopus 로고
    • Evidence of systematic expressed sequence tag IMAGE clone cross-hybridization on cDNA microarrays
    • Handley,D. et al. (2004) Evidence of systematic expressed sequence tag IMAGE clone cross-hybridization on cDNA microarrays. Genomics, 83, 1169-1175.
    • (2004) Genomics , vol.83 , pp. 1169-1175
    • Handley, D.1
  • 4
    • 26444454986 scopus 로고    scopus 로고
    • A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array
    • Harbig,J. et al. (2005) A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array. Nucleic Acids Res., 33, e31.
    • (2005) Nucleic Acids Res , vol.33
    • Harbig, J.1
  • 5
    • 0036947892 scopus 로고    scopus 로고
    • Robust estimators for expression analysis
    • Hubbell,E. et al. (2002) Robust estimators for expression analysis. Bioinformatics, 18, 1585-1592.
    • (2002) Bioinformatics , vol.18 , pp. 1585-1592
    • Hubbell, E.1
  • 6
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry,R.A. et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics, 4, 249-264.
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1
  • 7
    • 0002922661 scopus 로고    scopus 로고
    • Microarray results: How accurate are they?
    • Kothapalli,R. et al. (2002) Microarray results: How accurate are they? BMC Bioinformatics, 3, 22.
    • (2002) BMC Bioinformatics , vol.3 , pp. 22
    • Kothapalli, R.1
  • 8
    • 17744413236 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
    • Research0032.1-Research0032.11
    • Li,C. and Hung Wong,W. (2001) Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application. Genome Biol., 2 Research0032.1-Research0032.11.
    • (2001) Genome Biol , vol.2
    • Li, C.1    Hung Wong, W.2
  • 9
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
    • Li,C. and Wong,W.H. (2001) Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proc. Natl Acad. Sci. USA, 98, 31-36.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 10
    • 12244313858 scopus 로고    scopus 로고
    • Analysis of high density expression microarrays with signed-rank call algorithms
    • Liu,W.M. et al. (2002) Analysis of high density expression microarrays with signed-rank call algorithms. Bioinformatics, 18, 1593-1599.
    • (2002) Bioinformatics , vol.18 , pp. 1593-1599
    • Liu, W.M.1
  • 11
    • 2442691827 scopus 로고    scopus 로고
    • Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements
    • Mecham,B.H. et al. (2004a) Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements. Nucleic Acids Res., 32, e74.
    • (2004) Nucleic Acids Res , vol.32
    • Mecham, B.H.1
  • 12
    • 4844222268 scopus 로고    scopus 로고
    • Increased measurement accuracy for sequence-verified microarray probes
    • Mecham,B.H. et al. (2004b) Increased measurement accuracy for sequence-verified microarray probes. Physiol. Genomics, 18, 308-315.
    • (2004) Physiol. Genomics , vol.18 , pp. 308-315
    • Mecham, B.H.1
  • 14
    • 85035214096 scopus 로고    scopus 로고
    • Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays
    • Naef,F. and Magnasco,M.O. (2003) Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays. Phys. Rev. E Stat. Nonlin. Soft Matter Phys., 68, 011906.
    • (2003) Phys. Rev. E Stat. Nonlin. Soft Matter Phys , vol.68 , pp. 011906
    • Naef, F.1    Magnasco, M.O.2
  • 15
    • 37649029846 scopus 로고    scopus 로고
    • DNA hybridization to mismatched templates: A chip study
    • Naef,F. et al. (2002) DNA hybridization to mismatched templates: A chip study. Phys. Rev. E Stat. Nonlin. Soft Matter Phys., 65 040902.
    • (2002) Phys. Rev. E Stat. Nonlin. Soft Matter Phys , vol.65 , pp. 040902
    • Naef, F.1
  • 16
    • 25444438425 scopus 로고    scopus 로고
    • Inconsistencies over time in 5% of NetAffx probe-to-gene annotations
    • Perez-Iratxeta,C. and Andrade,M.A. (2005) Inconsistencies over time in 5% of NetAffx probe-to-gene annotations. BMC Bioinformatics, 6 183.
    • (2005) BMC Bioinformatics , vol.6 , pp. 183
    • Perez-Iratxeta, C.1    Andrade, M.A.2
  • 17
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena,M. et al. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1


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