Inconsistencies over time in 5% of NetAffx probe-to-gene annotations

BMC Bioinformatics

Volumn 6, Issue , 2005, Pages

  Perez Iratxeta, Carolina ^a   Andrade, Miguel A ^a  

^a OTTAWA HOSPITAL RESEARCH INSTITUTE   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DNA MICRO-ARRAY; EXPRESSED SEQUENCES; MICROARRAY ANALYSIS; MICROARRAY DESIGNS; PUBLIC DATABASE; SEQUENCE DATA;

GENES; NUCLEIC ACIDS;

PROBES;

COMPLEMENTARY DNA; MESSENGER RNA;

ARTICLE; BIOINFORMATICS; DATA ANALYSIS; DNA MICROARRAY; DNA PROBE; EQUIPMENT DESIGN; EXPRESSED SEQUENCE TAG; GENETIC DATABASE; PUBLISHING; SEQUENCE ANALYSIS; ANIMAL; DEVICES; MOUSE; NOMENCLATURE; PROCEDURES; REPRODUCIBILITY; STATISTICS;

ANIMALS; EQUIPMENT DESIGN; MICE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPRODUCIBILITY OF RESULTS; STATISTICS AS TOPIC; TERMINOLOGY AS TOPIC;

EID: 25444438425     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-6-183     Document Type: Article

References (8)

1. Perez-Iratxeta C, Palidwor G, Porter CG, Sanche NA, Huska MR, Suomela BP, Muro EM, Krzyzanowski P, Hughes E, Campbell PA, Rudnicki MA, Andrade MA: Study of stem cell function using microarray experiments. FEBS Letters 2005, 579:1795-1801.
2. Liu G, Loraine AE, Shigeta R, Cline M, Cheng J, Valmeekam V, Sun S, Kulp D, Siani-Rose MA: NetAffx: Affymetrix probesets and annotations. Nucleic Acids Res 2003, 31:82-86.
3. Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Church DM, DiCuccio M, Edgar R, Federhen S, Helmberg W, Kenton DL, Khovayko O, Lipman DJ, Madden TL, Maglott DR, Ostell J, Pontius JU, Pruitt KD, Schuler GD, Schriml LM, Sequeira E, Sherry ST, Sirotkin K, Starchenko G, Suzek TO, Tatusov R, Tatusova TA, Wagner L, Yaschenko E: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2005, 33(Database Issue):D39-45.
4. Wheeler DL, Church DM, Edgar R, Federhen S, Helmberg W, Madden TL, Pontius JU, Schuler GD, Schriml LM, Sequeira E, Suzek TO, Tatusova TA, Wagner L: Database resources of the National Center for Biotechnology Information: update. Nucleic Acids Res 2004, 32(Database issue):D35-40.
5. Ball C, Brazma A, Causton H, Chervitz S, Edgar R, Hingamp P, Matese JC, Icahn C, Parkinson H, Quackenbush J, Ringwald M, Sansone SA, Sherlock G, Spellman P, Stoeckert C, Tateno Y, Taylor R, White J, Winegarden N: An open letter on microarray data from the MGED Society. Microbiology 2004, 150:3522-3524.
6. Harbig J, Sprinkle R, Enkemann SA: A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array. Nucleic Acids Res 2005, 33:e31.
7. Roche FM, Hokamp K, Acab M, Babiuk LA, Hancock RE, Brinkman FS: ProbeLynx: a tool for updating the association of microarray probes to genes. Nucleic Acids Res 2004, 32:W471-4.
8. Leong HS, Yates T, Wilson C, Miller CJ: ADAPT: A Database of Affymetrix Probesets and Transcripts. Bioinformatics 2005.