Investigation of the complexation of the anti-cancer drug novantrone with the hairpin structure of the deoxyheptanucleotide 5′-d(GpCpGpApApGpC)

Journal of Molecular Structure

Volumn 843, Issue 1-3, 2007, Pages 78-86

  Kostjukov, V V ^a   Pahomov, V I ^a   Andrejuk, D D ^a   Davies, D B ^b   Evstigneev, M P ^a  

^a SEVASTOPOL STATE UNIVERSITY   (Russian Federation)

^b UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

DNA hairpin; Intercalation; Molecular dynamics; NMR spectroscopy; Novantrone

Indexed keywords

COMPLEXATION; CONCENTRATION (PROCESS); INTERCALATION; MOLECULAR DYNAMICS; MOLECULAR STRUCTURE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; ONCOLOGY; THERMODYNAMIC STABILITY;

DNA HAIRPIN; INTRAMOLECULAR WATER BRIDGES; NOVANTRONE;

DRUG PRODUCTS;

EID: 34548513275     PISSN: 00222860     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molstruc.2006.12.036     Document Type: Article

References (43)

1. Spiro C., Richards J.P., Chandrasekaran S., Brennan R.G., and McMurray C.T. Proc. Natl. Acad. Sci. USA 90 (1993) 4606
2. Miao D.-M., Honda Y., Tanaka K., Higashi A., Nakamura T., Taguchi Y., Sakai H., Komano T., and Bagdasarian M. Nucleic Acids Res. 21 (1993) 4900
3. Froelich-Ammon S.J., Gale K.C., and Osheroff N. J. Biol. Chem. 269 (1994) 7719
4. Zhu L., Chou S.-H., and Reid B.R. Proc. Natl. Acad. Sci. USA 93 (1996) 12159
5. Hirao I., Kawai G., Yoshizawa S., Nishimura Y., Ishido Y., Watanabe K., and Miura K. Nucleic Acids Res. 22 (1994) 576
6. Hirao I., Nishimura Y., Tagawa Y., Watanabe K., and Miura K. Nucleic Acids Res. 20 (1992) 3891
7. Yoshizawa S., Ueda T., Ishido Y., Miura K., Watanabe K., and Hirao I. Nucleic Acids Res. 22 (1994) 2217
8. Huang C.-H., Lin Y.-S., Yang Y.-L., Huang S.-W., and Chen C.W. Mol. Microbiol. 28 (1998) 905
9. Astell C.R., Chow M.B., and Ward D.C. J. Virol. 54 (1985) 171
10. Dai X., Greizerstein M.B., Nadas-Chinni K., and Rothman-Denes L.B. Proc. Natl. Acad. Sci. USA 94 (1997) 2174
11. Arai K., Low R., Kobori J., Shlomai J., and Korberg A. J. Biol. Chem. 256 (1981) 5273
12. Elias P., and Lehman I.R. Proc. Natl. Acad. Sci. USA 85 (1988) 2959
13. Cowing D.W., Bardwell J.C.A., Craig E.A., Woolford C., Hendrix R.W., and Gross C.A. Proc. Natl. Acad. Sci. USA 82 (1985) 2679
14. Rentzeperis D., Alessi K., and Marky L.A. Nucleic Acids Res. 21 (1993) 2683
15. Brown D.R., Kurz M., Kearns D.R., and Hsu V.L. Biochemistry 33 (1994) 651
16. Davies D.B., Pahomov V.I., and Veselkov A.N. Nucleic Acids Res. 25 (1997) 4523
17. Veselkov A.N., Eaton R.J., Semanin A.V., Pakhomov V.I., Djimant L.N., Karawajew L., and Davies D.B. Mol. Biol. 36 (2002) 708
18. Armitage O.J. Oncology 16 (2002) 490
19. Neidle S., and Waring M.J. Molecular Aspects of Anti-cancer Drug Action (1983), Macmillan, London
20. Smith P.J., Morgan S.A., Fox M.E., and Watson J.V. Biochem. Pharm. 40 (1990) 2069
21. Lown J.W., Morgan A.R., Yen S.F., Wang Y.-H., and Wilson W.D. Biochemistry 24 (1985) 4028
22. Chen K.-X., Gresh N., and Pullman B. Nucleic Acids Res. 14 (1986) 3799
23. Lown J.W., and Hanstock C.C. J. Biomol. Struct. Dyn. 2 (1985) 1097
24. Fox K.R., Waring M.J., Brown J.R., and Neidle S. FEBS Lett. 202 (1986) 289
25. Islam S.A., Neidle S., Gandecha B.M., Partridge M., Patterson L.M., and Brown J.R. J. Med. Chem. 28 (1985) 857
26. Veselkov A.N., Evstigneev M.P., Vysotskii S.A., Veselkov D.A., and Davies D.B. Biophysics 47 (2002) 459
27. Brunger A.T. X-PLOR. A System for X-ray Crystallography and NMR (1992), Univ. Press, Yale
28. MacKerell A.D., and Banavali N. J. Comp. Chem. 21 (2000) 105
29. Brooks B.R., Bruccoleri R.E., Olafson B.D., States D.J., Swaminathan S., and Karplus M. J. Comp. Chem. 4 (1983) 187
30. Padrta P., Stefl R., Kralik L., Zidek L., and Sckenar V. J. Biomol. NMR 24 (2002) 1
31. Ravishanker G., Auffinger P., Langley D.R., Jayaram B., Young M.A., and Beveridge D.L. Rev. Comp. Chem. 11 (1997) 317
32. Jorgensen W., Chandrasekhar J., Madura J.D., Impey R., and Klein M. J. Chem. Phys. 79 (1983) 926
33. Verlet L. Phys. Rev. 159 (1967) 98
34. Ryckaert J.P., Ciccotti G., and Berendsen H.J.C. J. Comp. Phys. 23 (1977) 327
35. Chalikian T.V., Sarvazyan A.P., and Breslauer K.J. Biophys. Chem. 51 (1994) 89
36. Humphrey W., Dalke A., and Schulten K. J. Mol. Graphics 14 (1996) 33
37. Davies D.B., Veselkov D.A., Evstigneev M.P., and Veselkov A.N. J. Chem. Soc. Perkin Trans. 2 (2001) 61
38. Yang X.-L., Robinson H., Gao Y.-G., and Wang A.H.-J. Biochemistry 39 (2000) 10950
39. Davies D.B., Eaton R.J., Baranovsky S.F., and Veselkov A.N. J. Biomol. Struct. Dyn. 17 (2000) 887
40. Reddy S.Y., Leclerc F., and Karplus M. Biophys. J. 84 (2003) 1421
41. Ts'o P.O.P. Basic Principles of Nucleic Acid Chemistry (1974), Acad. Press, New York
42. Davies D.B., Karawajew L., and Veselkov A.N. Biopolymers 38 (1996) 745
43. Rozvadovskaya A.O., Evstigneev V.P., Davies D.B., and Evstigneev M.P. Biophysics 51 (2006) 214