NMR determination of the conformational and drug binding properties of the DNA heptamer d(GpCpGpApApGpC) in aqueous solution

Nucleic Acids Research

Volumn 25, Issue 22, 1997, Pages 4523-4531

  Davies, David B ^a   Pahomov, Valery I ^b   Veselkov, Alexei N ^b  

^a UNIVERSITY OF LONDON   (United Kingdom)

^b SEVASTOPOL STATE UNIVERSITY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

ETHIDIUM BROMIDE; OLIGONUCLEOTIDE;

ARTICLE; DNA CONFORMATION; DNA DRUG COMPLEX; DNA STRUCTURE; DRUG BINDING; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; TEMPERATURE;

EID: 0030727028     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/25.22.4523     Document Type: Article

References (44)

1. Chastain, M. and Tinoco,I.Jr (1991) Prog. Nucleic Acid Res. Mol. Biol., 41, 131-177.
2. Rosenberg,M. and Court,D. (1979) Annu. Rev. Genet., 13, 319-351.
3. Wells,R.D., Goodman,T.C., HiIlen,W., Hom,G.T., Klein,R.D., Larson,J.E., Muller,U.R., Neuendorf,S.K., Panayotatos,N. and Stirdivan,S.M. (1980) Prog. Nucleic Acid Res. Mol. Biol., 25, 167-267.
4. Arai,K., Low,R., Kobori,J., Shlomai,J. and Korberg,A. (1981) J. Biol. Chem., 256, 5273-5280.
5. Elias,P. and Lehman,I.R. (1988) Proc. Natl. Acad. Sci. USA. 85, 2959-2963.
6. Cowing,D.W., Bardwell,J.C.A., Craig,E.A., Woolford,C, Hendrix,R.W. and Gross,C.A. (1985) Proc. Natl. Acad. Sci. USA, 82, 2679-2683.
7. Chattopadhyaya,R., Greskowiak,K. and Dickerson,R.E. (1990) J. Mol. Biol., 211, 189-210.
8. Pramnik,P., Kanhouwa,N. and Kan,L.-S. (1988) Biochemistry, 27, 3024-3031.
9. Xodo,L.E., Manzini,G., Quadrifoglio,F., van der Marel,G. and van Boom,J.HJ. (1991) Nucleic Acids Res., 19, 1505-1511.
10. Uhlenbeck,O.C. (1990) Nature, 346, 613.
11. SantaLucia,J., Kierzek,R. and Turner,D.H. (1992) Science, 256, 217-219.
12. Paner,T.M., Amaratunga,M. and Benight,A.S. (1992) Biopolymers, 32, 1715-1734.
13. Slama-Schwok,A., Teulade-Fichou,M.-P., VegneronJ.-P., Taillandier,E. and Lehn,J.-M. (1995) J. Am. Chem. Soc., 117, 6822-6830.
14. McMurray,C.T., Wilson,W.D. and Douglass,J.O. (1991) Proc. Natl. Acad. Sci. USA, 88, 666-670.
15. Hirao,I., Kawai,G., Yoshizawa,S., Nishimura,Y., Ishido,Y., Watanabe,K. and Miura,K. (1994) Nucleic Acids Res., 22, 576-582.
16. Hirao,I., Nishimura,Y., Tagawa,Y., Watanabe,K. and Miura,K. (1992) Nucleic Acids Res., 20, 3891-3896.
17. Davies,D.B. and Veselkov,A.N. (1996) J. Chem. Soc. Faraday Trans., 92, 3545-3557.
18. Davies,D.B., Karawajew,L. and Veselkov,A.N. (1996) Biopolymers, 38, 745-757.
19. Bianchi,M.E., Beltrame,M and Paonessa,G. (1989) Science, 243, 1056-1059.
20. Duckett,D.R., Murchie,A-I-H., Bhattacharya,A, Clegg,R.M., Diekmann,S., von Kitzig,E. and Lilley,D.M.J. (1992) Eur. J. Biochem., 207, 285-295.
21. Bresloff,J.L. and Crothers,D.M. (1981) Biochemistry, 20, 3547-3553.
22. Bax,A. and Summers,M.F. (1986) J. Am. Chem. Soc., 108, 2093-2094.
23. Freier,S.M., Albergo,D.D. and Tumer.D.H. (1983) Biopolymers, 22, 1107-1131.
24. Davies,D.B., Djimant,L.N. and Veselkov,AN. (1994) Nucleosides Nucleotides, 13, 637-655.
25. Davies,D.B., Djimant,L.N. and Veselkov,A.N. (1996) J. Chem. Soc. Faraday Trans., 96, 383-390.
26. Veselkov,A.N., Djimant,L.N., Karawajew,L.S. and Kulikov,E.L. (1985) Studia Biophys., 106, 171-180.
27. Petersheim,M. and Tumer,D.H. (1983) Biochemistry, 22, 256-263.
28. Veselkov,A.N., Davies,D.B., Djimant,L.N. and Parkes,H.G. (1993) Biophysics, 38, 171-180.
29. Veselkov,A.N., Djimant,L.N., Kodintsev,V.V., Lisyutin,V.A., Parkes,H.G. and Davies,D.B. (1995) Biophysics, 40, 283-291.
30. Veselkov,A.N., Davies,D.B., Djimant,L.N., Parkes,H.G. and Shipp,D. (1991) Biopolym. Cell, 7, 15-23 (in Russian).
31. Davies,D.B., Baranovsky,S.F. and Veselkov,A.N. (1997) J. Chem. Soc. Faraday Trans., 93, 1559-1572.
32. Breslauer,K.J., Frank,R., Blocker,H. and Marky,L.A. (1986) Proc. Natl. Acad. Sci. USA, 83, 3746-3750.
33. Rentzeperis,D., Alessi,K. and Marky,L.A. (1993) Nucleic Acids Res., 21, 2683-2689.
34. Rentzeperis,D., Medero,M. and Marky,L.A. (1995) Bioorg. Med. Chem., 3, 751-759.
35. Searle,M.S. and Lane,A.N. (1992) FEBS Lett., 297, 292-296.
36. Gale,E., Cundlifie,E., Reynolds,P.E., Rihmond,M.N. and Waring,M.J. (1981) The Molecular Basis of Antibiotic Action. John Wiley, Chichester, UK.
37. Giessner-Prettre,C. and Pullman,B. (1987) Q. Rev. Biophys., 20, 113-172.
38. Poltev,V.I. and Teplukhin,A.V. (1987) Mol. Biol., 21, 102-115.
39. Poltev,V.I. and Teplukhin,A.V. (1989) Int. J. Quant. Chem., 35, 91-102.
40. Dickerson,R.E. (1989) J. Biomol. Struct. Dyn., 6, 627-634.
41. Sobell,H.M., Tsai,C.-C., Jain,S.C. and Gilbert,S.G. (1977) J. Mol. Biol., 144, 333-365.
42. Jain,S.C. and Sobell,H.M. (1984) J. Biomol. Struct. Dyn., 1, 1161-1177.
43. Lybrand,T. and Kollman,P. (1985) Biopolymers, 24, 1863-1879.
44. Chen,K.-X., Gresh,N. and Pullman,B. (1987) Biopolymers, 26, 831-848.