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Volumn 14, Issue 1, 2004, Pages 205-211

Remarkable bacterial diversity in the tidal flat sediment as revealed by 16S rDNA analysis

Author keywords

16S rDNA sequencing; Diversity; Phylogeny; Tidal flat

Indexed keywords

DNA 16S; RNA 16S;

EID: 1542285317     PISSN: 10177825     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (70)

References (41)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59: 143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 2
    • 0019911078 scopus 로고
    • Temporal and spatial variation in intertidal sedimentation rates
    • Carling, P. A. 1982. Temporal and spatial variation in intertidal sedimentation rates. Sedimentol. 29: 17-23.
    • (1982) Sedimentol. , vol.29 , pp. 17-23
    • Carling, P.A.1
  • 3
    • 0036694982 scopus 로고    scopus 로고
    • Isolation and identification of photosynthetic bacterium useful for waste water treatment
    • Choi, H.-P, H.-J. Kang, H.-C. Seo, and H.-C. Sung. 2002. Isolation and identification of photosynthetic bacterium useful for waste water treatment. J. Microbiol. Biotechnol. 12: 643-648.
    • (2002) J. Microbiol. Biotechnol. , vol.12 , pp. 643-648
    • Choi, H.-P.1    Kang, H.-J.2    Seo, H.-C.3    Sung, H.-C.4
  • 4
    • 0028904058 scopus 로고
    • A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences
    • Chun, J. and M. Goodfellow. 1995. A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int. J. Syst. Bacteriol. 45: 240-245.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 240-245
    • Chun, J.1    Goodfellow, M.2
  • 5
    • 0032954830 scopus 로고    scopus 로고
    • Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio, mimicus
    • Chun, J., A. Huq, and R. R. Colwell. 1999. Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio, mimicus. Appl. Environ. Microbiol. 65: 2202-2208.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 2202-2208
    • Chun, J.1    Huq, A.2    Colwell, R.R.3
  • 7
    • 0032976388 scopus 로고    scopus 로고
    • Phylogenetic analysis of particle-attached and free-living bacterial communities in the columbia river, its estuary, and the adjacent coastal ocean
    • Crump, B. C., E. V. Armbrust, and J. A. Baross. 1999. Phylogenetic analysis of particle-attached and free-living bacterial communities in the columbia river, its estuary, and the adjacent coastal ocean. Appl. Environ. Microbiol. 65: 3192-3204.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3192-3204
    • Crump, B.C.1    Armbrust, E.V.2    Baross, J.A.3
  • 8
    • 0035146134 scopus 로고    scopus 로고
    • Novel bacterial lineages at the (sub)division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms
    • Derakshani, M., T. Lukow, and W. Liesack. 2001. Novel bacterial lineages at the (sub)division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms. Appl. Environ. Microbiol. 67: 623-631.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 623-631
    • Derakshani, M.1    Lukow, T.2    Liesack, W.3
  • 9
    • 0024367905 scopus 로고
    • Natural relationships among sulfate-reducing eubacteria
    • Devereux, R., M. Delaney, F. Widdel, and D. A. Stahl. 1989. Natural relationships among sulfate-reducing eubacteria. J. Bacteriol. 171: 6689-6695.
    • (1989) J. Bacteriol. , vol.171 , pp. 6689-6695
    • Devereux, R.1    Delaney, M.2    Widdel, F.3    Stahl, D.A.4
  • 10
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 11
    • 0037335946 scopus 로고    scopus 로고
    • Community structure of ammonia-oxidizing bacteria within anoxic marine sediments
    • Freitag, T. E. and J. I. Prosser. 2003. Community structure of ammonia-oxidizing bacteria within anoxic marine sediments. Appl. Environ. Microbiol. 69: 1359-1371.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1359-1371
    • Freitag, T.E.1    Prosser, J.I.2
  • 12
    • 0029660135 scopus 로고    scopus 로고
    • Phylogenetic analysis of the bacterial communities in marine sediments
    • Gray, J. P. and R. P. Herwig. 1996. Phylogenetic analysis of the bacterial communities in marine sediments. Appl. Environ. Microbiol. 62: 4049-4059.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4049-4059
    • Gray, J.P.1    Herwig, R.P.2
  • 13
    • 0032959907 scopus 로고    scopus 로고
    • Polycyclic aromatic hydrocarbon degradation by a new marine bacterium, Neptunomonas naphthovorans gen. nov., sp. nov
    • Hedlund, B. P., A. D. Geiselbrecht, T. J. Bair, and J. T. Staley. 1999. Polycyclic aromatic hydrocarbon degradation by a new marine bacterium, Neptunomonas naphthovorans gen. nov., sp. nov. Appl. Environ. Microbiol. 65: 251-259.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 251-259
    • Hedlund, B.P.1    Geiselbrecht, A.D.2    Bair, T.J.3    Staley, J.T.4
  • 14
    • 0023866522 scopus 로고
    • DNA probe method for the detection of specific microorganisms in the soil bacterial community
    • Holben, W. E., J. K. Jansso, B. K. Chelm, and J. M. Tiedje. 1988. DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl. Environ. Microbiol. 54: 703-711.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 703-711
    • Holben, W.E.1    Jansso, J.K.2    Chelm, B.K.3    Tiedje, J.M.4
  • 15
    • 0037375056 scopus 로고    scopus 로고
    • Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption
    • Huber, J. A., D. A. Butterfield, and J. A. Baross. 2003. Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption. FEMS Microbiol. Ecol. 43: 393-409.
    • (2003) FEMS Microbiol. Ecol. , vol.43 , pp. 393-409
    • Huber, J.A.1    Butterfield, D.A.2    Baross, J.A.3
  • 16
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz, P., C. Pitulle, K. L. Hershberger, and N. R. Pace. 1998. Novel division level bacterial diversity in a Yellowstone hot spring. J. Bacteriol. 180: 366-376.
    • (1998) J. Bacteriol. , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 17
    • 1542293427 scopus 로고    scopus 로고
    • Recovery of bacterial community DNA from soil
    • Hurst, C. J., R. L. Crawford, G. R. Knudsen, M. J. McInerney and L. D. Stetzenbach (eds.), 2nd ed. ASM Press, Washington DC, U.S.A
    • Hurst, C. J. 1997. Recovery of bacterial community DNA from soil, pp. 433-434. In Hurst, C. J., R. L. Crawford, G. R. Knudsen, M. J. McInerney and L. D. Stetzenbach (eds.), Manual of Environmental Microbiology, 2nd ed. ASM Press, Washington DC, U.S.A.
    • (1997) Manual of Environmental Microbiology , pp. 433-434
    • Hurst, C.J.1
  • 18
    • 0020481772 scopus 로고
    • Ecology of the bacteria of the sulphur cycle with special reference to anoxic-oxic interface environments
    • Jorgensen, B. B. 1982. Ecology of the bacteria of the sulphur cycle with special reference to anoxic-oxic interface environments. Philos. Trans. R Soc. Lond. B Biol. Sci. 298: 543-561.
    • (1982) Philos. Trans. R Soc. Lond. B Biol. Sci. , vol.298 , pp. 543-561
    • Jorgensen, B.B.1
  • 19
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro, H. N. (ed.), Academic Press, New York, U.S.A
    • Jukes, T. H. and C. R. Cantor. 1969. Evolution of protein molecules, pp. 21-132. In Munro, H. N. (ed.), Mammalian Protein Metabolism. Academic Press, New York, U.S.A.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 20
    • 0033831538 scopus 로고    scopus 로고
    • Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater
    • LaPara, T. M., C. H. Nakatsu, L. Pantea, and J. E. Alleman. 2000. Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater. Appl. Environ. Microbiol. 66: 3951-3959.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3951-3959
    • LaPara, T.M.1    Nakatsu, C.H.2    Pantea, L.3    Alleman, J.E.4
  • 21
    • 0034922674 scopus 로고    scopus 로고
    • The phylogenetic relationship of several oscillatorian cyanobacteria, forming blooms at Daecheong reservoirs, based on partial 16S rRNA gene sequences
    • Lee, W. J. and K. S. Bae. 2001. The phylogenetic relationship of several oscillatorian cyanobacteria, forming blooms at Daecheong reservoirs, based on partial 16S rRNA gene sequences. J. Microbiol. Biotechnol. 11: 504-507.
    • (2001) J. Microbiol. Biotechnol. , vol.11 , pp. 504-507
    • Lee, W.J.1    Bae, K.S.2
  • 22
    • 0032990367 scopus 로고    scopus 로고
    • Bacterial diversity in deep-sea sediments from different depths
    • Li, L., C. Kato, and K. Horikoshi. 1999. Bacterial diversity in deep-sea sediments from different depths. Biodivers. Conserv. 8: 659-677.
    • (1999) Biodivers. Conserv. , vol.8 , pp. 659-677
    • Li, L.1    Kato, C.2    Horikoshi, K.3
  • 23
    • 0032882298 scopus 로고    scopus 로고
    • Microbial diversity in sediments collected from the deepest cold-seep area, the Japan Trench
    • Li, L., C. Kato, and K. Horikoshi. 1999. Microbial diversity in sediments collected from the deepest cold-seep area, the Japan Trench. Mar. Biotechnol. 1: 391-400.
    • (1999) Mar. Biotechnol. , vol.1 , pp. 391-400
    • Li, L.1    Kato, C.2    Horikoshi, K.3
  • 24
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu, W. T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63: 4516-4522.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 25
    • 0344765523 scopus 로고    scopus 로고
    • Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization
    • Llobet-Brossa, E., R. Rossello-Mora, and R. Amann. 1998. Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization. Appl. Environ. Microbial. 64: 2691-2696.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2691-2696
    • Llobet-Brossa, E.1    Rossello-Mora, R.2    Amann, R.3
  • 28
    • 0028976712 scopus 로고
    • Genetic comparisons reveal the same unknown bacterial lineages in atlantic and pacific bacterioplankton communities
    • Mullins, T. D.,T. B. Britschgi, R. L. Krest, and S. J. Giovannoni. 1995. Genetic comparisons reveal the same unknown bacterial lineages in atlantic and pacific bacterioplankton communities. Limnol. Oceanogr. 40: 148-158.
    • (1995) Limnol. Oceanogr. , vol.40 , pp. 148-158
    • Mullins, T.D.1    Britschgi, T.B.2    Krest, R.L.3    Giovannoni, S.J.4
  • 31
    • 0031732243 scopus 로고    scopus 로고
    • Molecular characterization of a sulfate-reducing consortium which mineralizes benzene
    • Phelps, C. D., L. J. Kerkhof, and L. Y. Young. 1998. Molecular characterization of a sulfate-reducing consortium which mineralizes benzene. FEMS Microbiol. Ecol. 27: 269-279.
    • (1998) FEMS Microbiol. Ecol. , vol.27 , pp. 269-279
    • Phelps, C.D.1    Kerkhof, L.J.2    Young, L.Y.3
  • 32
    • 0033857193 scopus 로고    scopus 로고
    • Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine. arctic sediments
    • Ravenschlag, K., K. Sahm, C. Knoblauch, B. B. Jorgensen, and R. Amann. 2000. Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine. arctic sediments. Appl. Environ. Microbiol. 66: 3592-3602.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3592-3602
    • Ravenschlag, K.1    Sahm, K.2    Knoblauch, C.3    Jorgensen, B.B.4    Amann, R.5
  • 34
    • 0032851739 scopus 로고    scopus 로고
    • Phylogenetic affiliation and quantification of psychrophilic sulfate-reducing isolates in marine arctic sediments
    • Sahm, K., C. Knoblauch, and R. Amann. 1999. Phylogenetic affiliation and quantification of psychrophilic sulfate-reducing isolates in marine arctic sediments. Appl. Environ. Microbial. 65: 3976-3981.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3976-3981
    • Sahm, K.1    Knoblauch, C.2    Amann, R.3
  • 35
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 36
    • 0039197469 scopus 로고
    • Ecological actions of sulfate-reducing bacteria
    • Odom, J. M. and R. Singleton (eds.), Springer-Verlag, New York, U.S.A
    • Smith, W. 1993. Ecological actions of sulfate-reducing bacteria, pp. 161-188. In Odom, J. M. and R. Singleton (eds.), The Sulfate-Reducing Bacteria: Contemporary Perspectives. Springer-Verlag, New York, U.S.A.
    • (1993) The Sulfate-Reducing Bacteria: Contemporary Perspectives , pp. 161-188
    • Smith, W.1
  • 37
    • 0002079242 scopus 로고    scopus 로고
    • Complex microbial consortia inhabiting hydrogen sulfide-rich black mud from marine coastal environments
    • Tanner, M. A., C. L. Everett, W. J. Coleman, M. M. Yang, and D. C. Youvan. 2000. Complex microbial consortia inhabiting hydrogen sulfide-rich black mud from marine coastal environments. Biotechnol. et alia 8: 1-16.
    • (2000) Biotechnol. et Alia , vol.8 , pp. 1-16
    • Tanner, M.A.1    Everett, C.L.2    Coleman, W.J.3    Yang, M.M.4    Youvan, D.C.5
  • 39
    • 0032696569 scopus 로고    scopus 로고
    • Microbial diversity in marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis
    • Urakawa, H., K. Kita-Tsukamoto, and K. Ohwada. 1999. Microbial diversity in marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis. Microbiology 145: 3305-3315.
    • (1999) Microbiology , vol.145 , pp. 3305-3315
    • Urakawa, H.1    Kita-Tsukamoto, K.2    Ohwada, K.3
  • 40
    • 0032898718 scopus 로고    scopus 로고
    • Changes in the microbial community in Japan Trench sediment from a depth of 6292 in during cultivation without decompression
    • Yanagibayashi, M., Y. Nogi, L. Li, and C. Kato. 1999. Changes in the microbial community in Japan Trench sediment from a depth of 6292 in during cultivation without decompression. FEMS Microbiol. Lett. 170: 271-279.
    • (1999) FEMS Microbiol. Lett. , vol.170 , pp. 271-279
    • Yanagibayashi, M.1    Nogi, Y.2    Li, L.3    Kato, C.4
  • 41
    • 0842294688 scopus 로고    scopus 로고
    • Remarkable cultured bacterial biodiversity in getbol, the tidal flat of Korea
    • IUMS World Congress, Paris, France
    • Yi, H. and J. Chun. 2002. Remarkable cultured bacterial biodiversity in getbol, the tidal flat of Korea. IUMS World Congress, Paris, France.
    • (2002)
    • Yi, H.1    Chun, J.2


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