Salegentibacter holothuriorum sp. nov., isolated from the edible holothurian Apostichopus japonicus

International Journal of Systematic and Evolutionary Microbiology

Volumn 54, Issue 4, 2004, Pages 1107-1110

  Nedashkovskaya, Olga I ^a   Suzuki, Makoto ^b   Vancanneyt, Marc ^c   Cleenwerck, Ilse ^c   Zhukova, Natalia V ^d   Vysotskii, Mikhail V ^d   Mikhailov, Valery V ^a   Swings, Jean ^c  

^a PACIFIC INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b KYOWA HAKKO KOGYO CO LTD   (Japan)

^c GHENT UNIVERSITY   (Belgium)

^d INSTITUTE OF MARINE BIOLOGY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BETA GALACTOSIDASE; CATALASE; OXIDOREDUCTASE; RNA 16S;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CONTROLLED STUDY; GENE SEQUENCE; GENUS; GRAM NEGATIVE BACTERIUM; JAPAN; NEW SPECIES; NOMENCLATURE; NONHUMAN; NUCLEOTIDE SEQUENCE; PIGMENTATION; PRIORITY JOURNAL; SALEGENTIBACTER HOLOTHURIORUM; SEA; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

AEROBIOSIS; ANIMALS; BETA-GALACTOSIDASE; CATALASE; DNA, BACTERIAL; DNA, RIBOSOMAL; FLAVOBACTERIACEAE; GENES, RRNA; GENTIAN VIOLET; MOLECULAR SEQUENCE DATA; MOVEMENT; OXIDOREDUCTASES; PACIFIC OCEAN; PHENAZINES; PHYLOGENY; PIGMENTS, BIOLOGICAL; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEA CUCUMBERS; SEAWATER; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; STAINING AND LABELING; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS); HOLOTHURIA; NEGIBACTERIA; SALEGENTIBACTER; SALEGENTIBACTER SALEGENS;

EID: 4344606226     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02987-0     Document Type: Article

References (24)

1. Bligh, E. G. & Dyer, W. J. (1959). A rapid method of total lipid extraction and purification. Can J Med Sci 37, 911-917.
2. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861-1868.
3. Dobson, S. J., Colwell, R. R., McMeekin, T. A. & Franzmann, P. D. (1993). Direct sequencing of the polymerase chain reaction-amplified 16S rRNA gene of Flavobacterium gondwanense sp. nov. and Flavobacterium salegens sp. nov., two new species from a hypersaline Antarctic lake. Int J Syst Bacteriol 43, 77-83.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Felsenstein, F. (11995). PHYLIP (Phylogeny Inference Package) version 3.57c. Seattle: University of Washington.
6. Gerhardt P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
7. Hiraishi, A. (1992). Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification. Lett Appl Microbiol 15, 210-213.
8. Hugh, R. & Leifson, E. (1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram-negative bacteria. J Bacteriol 66, 24-26.
9. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
10. Leisner, J. J., Vancanneyt, M., Lefebvre, K., Vandemeulebroecke, K., Hoste, B., Euras Vilalta, N., Rusul, G. & Swings, J. (2002). Lactobacillus durianis sp. nov., isolated from an acid-fermented condiment (tempoyak) in Malaysia. Int J Syst Evol Microbiol 52, 927-931.
11. Lemos, M. L., Toranzo, A. E. & Barja, J. L. (1985). Modified medium for the oxidation-fermentation test in the identification of marine bacteria. Appl Environ Microbiol 49, 1541-1543.
12. McCammon, S. A. & Bowman, J. P. (2000). Taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov. and Flavobacterium xanthum sp. nov., nom. rev. and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov. Int J Syst Evol Microbiol 50, 1055-1063.
13. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
14. Nakagawa, Y. & Yamasato, K. (1993). Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis. J Gen Microbiol 139, 1155-1161.
15. Nedashkovskaya, O. I., Suzuki, M., Vysotskii, M. V. & Mikhailov, V. V. (2003a). Reichenbachia agariperforans gen. nov., sp. nov., a novel marine bacterium in the phylum Cytophaga-Flavobacterium-Bacteroides. Int J Syst Evol Microbiol 53, 81-85.
16. Nedashkovskaya, O. I., Kim, S. B., Han, S. K. & 7 other authors (2003b). Mesonia algae gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi (Kütz) Kornm. Int J Syst Evol Microbiol 53, 1967-1971.
17. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
18. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Suzuki, M., Nakagawa, Y., Harayama, S. & Yamamoto, S. (2001). Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov. Int J Syst Evol Microbiol 51, 1639-1652.
20. Svetashev, V. I. & Vaskovsky, V. E. (1972). A simplified technique for thin-layer microchromatography of lipids. J Chromatogr 67, 376-378.
21. Svetashev, V. I., Vysotskii, M. V., Ivanova, E. P. & Mikhailov, V. V. (1995). Cellular fatty acid of Alteromonas species. Syst Appl Microbiol 18, 37-43.
22. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
23. Van de Peer, Y., De Rijk, P., Wuyts, J., Winkelmans, T. & De Wachter, R. (2000). The European small subunit ribosomal RNA database. Nucleic Acids Res 28, 175-176.
24. Vaskovsky, V. E., Kostetsky, E. Y. & Vasendin, I. M. (1975). A universal reagent for phospholipid analysis. J Chromatogr 114, 129-141.