-
1
-
-
23944482310
-
Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis
-
R. Elkon, S. Rashi-Elkeles, Y. Lerenthal, C. Linhart, T. Tenne, N. Amariglio, G. Rechavi, R. Shamir and Y. Shiloh, Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis. Genome Biol. 6, R43 (2005).
-
(2005)
Genome Biol
, vol.6
-
-
Elkon, R.1
Rashi-Elkeles, S.2
Lerenthal, Y.3
Linhart, C.4
Tenne, T.5
Amariglio, N.6
Rechavi, G.7
Shamir, R.8
Shiloh, Y.9
-
2
-
-
17444436178
-
Biological detection of low radiation doses by combining results of two microarray analysis methods
-
G. Mercier, N. Berthault, J. Mary, J. Peyre, A. Antoniadis, J. P. Comet, A. Cornuejols, C. Froidevaux and M. Dutreix, Biological detection of low radiation doses by combining results of two microarray analysis methods. Nucleic Acids Res. 32, e12 (2004).
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Mercier, G.1
Berthault, N.2
Mary, J.3
Peyre, J.4
Antoniadis, A.5
Comet, J.P.6
Cornuejols, A.7
Froidevaux, C.8
Dutreix, M.9
-
3
-
-
5144234957
-
Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance
-
M. Tanaka, A. M. Earl, H. A. Howell, M. J. Park, J. A. Eisen, S. N. Peterson and J. R. Battista, Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance. Genetics 168, 21-33 (2004).
-
(2004)
Genetics
, vol.168
, pp. 21-33
-
-
Tanaka, M.1
Earl, A.M.2
Howell, H.A.3
Park, M.J.4
Eisen, J.A.5
Peterson, S.N.6
Battista, J.R.7
-
4
-
-
0043009733
-
ATM-dependent and -independent gene expression changes in response to oxidative stress, gamma irradiation, and UV irradiation
-
A. N. Heinloth, R. E. Shackelford, C. L. Innes, L. Bennett, L. Li, R. P. Amin, S. O. Sieber, K. G. Flores, P. R. Bushel and R. S. Paules, ATM-dependent and -independent gene expression changes in response to oxidative stress, gamma irradiation, and UV irradiation. Radiat. Res. 160, 273-290 (2003).
-
(2003)
Radiat. Res
, vol.160
, pp. 273-290
-
-
Heinloth, A.N.1
Shackelford, R.E.2
Innes, C.L.3
Bennett, L.4
Li, L.5
Amin, R.P.6
Sieber, S.O.7
Flores, K.G.8
Bushel, P.R.9
Paules, R.S.10
-
5
-
-
4444236147
-
Portrait of transcriptional responses to ultraviolet and ionizing radiation in human cells
-
K. E. Rieger and G. Chu, Portrait of transcriptional responses to ultraviolet and ionizing radiation in human cells. Nucleic Acids Res. 32, 4786-4803 (2004).
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 4786-4803
-
-
Rieger, K.E.1
Chu, G.2
-
6
-
-
0141645610
-
Transcription factors activated in mammalian cells after clinically relevant doses of ionizing radiation
-
T. Criswell, K. Leskov, S. Miyamoto, G. Luo and D. A. Boothman, Transcription factors activated in mammalian cells after clinically relevant doses of ionizing radiation. Oncogene 22, 5813-5827 (2003).
-
(2003)
Oncogene
, vol.22
, pp. 5813-5827
-
-
Criswell, T.1
Leskov, K.2
Miyamoto, S.3
Luo, G.4
Boothman, D.A.5
-
7
-
-
0141785046
-
-
S. A. Amundson, M. Bittner and A. J. Fornace, Jr., Functional genomics as a window on radiation stress signaling. Oncogene 22, 5828-5833 (2003).
-
S. A. Amundson, M. Bittner and A. J. Fornace, Jr., Functional genomics as a window on radiation stress signaling. Oncogene 22, 5828-5833 (2003).
-
-
-
-
8
-
-
33745639254
-
Identification of conserved pathways of DNA-damage response and radiation protection by genome-wide RNAi
-
G. Van Haaften, R. Romeijn, J. Pothof, W. Koole, L. H. Mullenders, A. Pastink, R. H. Plasterk and M. Tijsterman, Identification of conserved pathways of DNA-damage response and radiation protection by genome-wide RNAi. Curr. Biol. 16, 1344-1350 (2006).
-
(2006)
Curr. Biol
, vol.16
, pp. 1344-1350
-
-
Van Haaften, G.1
Romeijn, R.2
Pothof, J.3
Koole, W.4
Mullenders, L.H.5
Pastink, A.6
Plasterk, R.H.7
Tijsterman, M.8
-
9
-
-
0028141973
-
Radiation induction of immediate early genes: Effectors of the radiation-stress response
-
R. R. Weichselbaum, D. Hallahan, Z. Fuks and D. Kufe, Radiation induction of immediate early genes: Effectors of the radiation-stress response. Int. J. Radiat. Oncol. Biol. Phys. 30, 229-234 (1994).
-
(1994)
Int. J. Radiat. Oncol. Biol. Phys
, vol.30
, pp. 229-234
-
-
Weichselbaum, R.R.1
Hallahan, D.2
Fuks, Z.3
Kufe, D.4
-
10
-
-
0030971097
-
-
M. C. Hollander, Q. Zhan, I. Bae and A. J. Fornace, Jr., Mammalian GADD34, an apoptosis- and DNA damage-inducible gene. J. Biol. Chem. 272, 13731-13737 (1997).
-
M. C. Hollander, Q. Zhan, I. Bae and A. J. Fornace, Jr., Mammalian GADD34, an apoptosis- and DNA damage-inducible gene. J. Biol. Chem. 272, 13731-13737 (1997).
-
-
-
-
11
-
-
33745038921
-
Ranked prediction of p53 targets using hidden variable dynamic modeling
-
M. Barenco, D. Tomescu, D. Brewer, R. Callard, J. Stark and M. Hubank, Ranked prediction of p53 targets using hidden variable dynamic modeling. Genome Biol. 7, R25 (2006).
-
(2006)
Genome Biol
, vol.7
-
-
Barenco, M.1
Tomescu, D.2
Brewer, D.3
Callard, R.4
Stark, J.5
Hubank, M.6
-
12
-
-
0034753138
-
-
S. A. Amundson, M. Bittner, P. Meltzer, J. Trent and A. J. Fornace, Jr., Induction of gene expression as a monitor of exposure to ionizing radiation. Radiat. Res. 156, 657-661 (2001).
-
S. A. Amundson, M. Bittner, P. Meltzer, J. Trent and A. J. Fornace, Jr., Induction of gene expression as a monitor of exposure to ionizing radiation. Radiat. Res. 156, 657-661 (2001).
-
-
-
-
13
-
-
0025603725
-
Differential modulation of specific gene expression following high- and low-LET radiations
-
G. E. Woloschak and C. M. Chang-Liu, Differential modulation of specific gene expression following high- and low-LET radiations. Radiat. Res. 124, 183-187 (1990).
-
(1990)
Radiat. Res
, vol.124
, pp. 183-187
-
-
Woloschak, G.E.1
Chang-Liu, C.M.2
-
14
-
-
23744439082
-
Gene expression responses to DNA damage are altered in human aging and in Werner Syndrome
-
K. J. Kyng, A. May, T. Stevnsner, K. G. Becker, S. Kolvra and V. A. Bohr, Gene expression responses to DNA damage are altered in human aging and in Werner Syndrome. Oncogene 24, 5026-5042 (2005).
-
(2005)
Oncogene
, vol.24
, pp. 5026-5042
-
-
Kyng, K.J.1
May, A.2
Stevnsner, T.3
Becker, K.G.4
Kolvra, S.5
Bohr, V.A.6
-
15
-
-
0035940408
-
Dose-dependent and independent temporal patterns of gene responses to ionizing radiation in normal and tumor cells and tumor xenografts
-
N. N. Khodarev, J. O. Park, J. Yu, N. Gupta, E. Nodzenski, B. Roizman and R. R. Weichselbaum, Dose-dependent and independent temporal patterns of gene responses to ionizing radiation in normal and tumor cells and tumor xenografts. Proc. Natl. Acad. Sci. USA 98, 12665-12670 (2001).
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 12665-12670
-
-
Khodarev, N.N.1
Park, J.O.2
Yu, J.3
Gupta, N.4
Nodzenski, E.5
Roizman, B.6
Weichselbaum, R.R.7
-
16
-
-
0344121661
-
Gene expression changes in mouse brain after exposure to low-dose ionizing radiation
-
E. Yin, D. O. Nelson, M. A. Coleman, L. E. Peterson and A. J. Wyrobek, Gene expression changes in mouse brain after exposure to low-dose ionizing radiation. Int. J. Radiat. Biol. 79, 759-775 (2003).
-
(2003)
Int. J. Radiat. Biol
, vol.79
, pp. 759-775
-
-
Yin, E.1
Nelson, D.O.2
Coleman, M.A.3
Peterson, L.E.4
Wyrobek, A.J.5
-
17
-
-
21244456450
-
Gene expression profiles of normal human fibroblasts after exposure to ionizing radiation: A comparative study of low and high doses
-
L. H. Ding, M. Shingyoji, F. Chen, J. J. Hwang, S. Burma, C. Lee, J. F. Cheng and D. J. Chen, Gene expression profiles of normal human fibroblasts after exposure to ionizing radiation: A comparative study of low and high doses. Radiat. Res. 164, 17-26 (2005).
-
(2005)
Radiat. Res
, vol.164
, pp. 17-26
-
-
Ding, L.H.1
Shingyoji, M.2
Chen, F.3
Hwang, J.J.4
Burma, S.5
Lee, C.6
Cheng, J.F.7
Chen, D.J.8
-
18
-
-
0035866813
-
Sublethal irradiation promotes migration and invasiveness of glioma cells: Implications for radiotherapy of human glioblastoma
-
C. Wild-Bode, M. Weller, A. Rimner, J. Dichgans and W. Wick, Sublethal irradiation promotes migration and invasiveness of glioma cells: Implications for radiotherapy of human glioblastoma. Cancer Res. 61, 2744-2750 (2001).
-
(2001)
Cancer Res
, vol.61
, pp. 2744-2750
-
-
Wild-Bode, C.1
Weller, M.2
Rimner, A.3
Dichgans, J.4
Wick, W.5
-
19
-
-
0036570010
-
Activation of the nuclear transcription factor kappaB (NFkB) and differential gene expression in U87 glioma cells after exposure to the cytoprotector amifostine
-
Y. Kataoka, J. S. Murley, N. N. Khodarev, R. R. Weichselbaum and D. J. Grdina, Activation of the nuclear transcription factor kappaB (NFkB) and differential gene expression in U87 glioma cells after exposure to the cytoprotector amifostine. Int. J. Radiat. Oncol. Biol. Phys. 53, 180-189 (2002).
-
(2002)
Int. J. Radiat. Oncol. Biol. Phys
, vol.53
, pp. 180-189
-
-
Kataoka, Y.1
Murley, J.S.2
Khodarev, N.N.3
Weichselbaum, R.R.4
Grdina, D.J.5
-
20
-
-
0032749465
-
The response of human glioma cell lines to low-dose radiation exposure
-
S. C. Short, S. A. Mitchell, P. Boulton, M. Woodcock and M. C. Joiner, The response of human glioma cell lines to low-dose radiation exposure. Int. J. Radiat. Biol. 75, 1341-1348 (1999).
-
(1999)
Int. J. Radiat. Biol
, vol.75
, pp. 1341-1348
-
-
Short, S.C.1
Mitchell, S.A.2
Boulton, P.3
Woodcock, M.4
Joiner, M.C.5
-
21
-
-
0037457667
-
Human malignant glioma cell lines are sensitive to low radiation doses
-
P. D. Beauchesne, S. Bertrand, R. Branche, S. P. Linke, R. Revel, J. F. Dore and R. M. Pedeux, Human malignant glioma cell lines are sensitive to low radiation doses. Int. J. Cancer 105, 33-40 (2003).
-
(2003)
Int. J. Cancer
, vol.105
, pp. 33-40
-
-
Beauchesne, P.D.1
Bertrand, S.2
Branche, R.3
Linke, S.P.4
Revel, R.5
Dore, J.F.6
Pedeux, R.M.7
-
22
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
R. A. Irizarry, B. Hobbs, F. Collin, Y. D. Beazer-Barclay, K. J. Antonellis, U. Scherf and T. P. Speed, Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4, 249-264 (2003).
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
23
-
-
2542610720
-
Preprocessing of oligonucleotide array data
-
Z. Wu and R. A. Irizarry, Preprocessing of oligonucleotide array data. Nat. Biotechnol. 22, 656-658 (2004);
-
(2004)
Nat. Biotechnol
, vol.22
, pp. 656-658
-
-
Wu, Z.1
Irizarry, R.A.2
-
24
-
-
39749114612
-
-
author reply 22, 658 (2004).
-
author reply 22, 658 (2004).
-
-
-
-
25
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Article
-
G. K. Smyth, Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3, Article 3 (2004).
-
(2004)
Stat. Appl. Genet. Mol. Biol
, vol.3
, pp. 3
-
-
Smyth, G.K.1
-
26
-
-
0032883806
-
Housekeeping genes as internal standards: Use and limits
-
O. Thellin, W. Zorzi, B. Lakaye, B. De Borman, B. Coumans, G. Hennen, T. Grisar, A. Igout and E. Heinen, Housekeeping genes as internal standards: use and limits. J. Biotechnol. 75, 291-295 (1999).
-
(1999)
J. Biotechnol
, vol.75
, pp. 291-295
-
-
Thellin, O.1
Zorzi, W.2
Lakaye, B.3
De Borman, B.4
Coumans, B.5
Hennen, G.6
Grisar, T.7
Igout, A.8
Heinen, E.9
-
27
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
RESEARCH0034
-
J. Vandesompele, K. De Preter, F. Pattyn, B. Poppe, N. Van Roy, A. De Paepe and F. Speleman, Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 3 (7), RESEARCH0034 (2002).
-
(2002)
Genome Biol
, vol.3
, Issue.7
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
Speleman, F.7
-
28
-
-
20844458965
-
Housekeeping genes in cancer: Normalization of array data
-
A. H. Khimani, A. M. Mhashilkar, A. Mikulskis, M. O'Malley, J. Liao, E. E. Golenko, P. Mayer, S. Chada, J. B. Killian and S. T. Lott, Housekeeping genes in cancer: Normalization of array data. Biotechniques 38, 739-745 (2005).
-
(2005)
Biotechniques
, vol.38
, pp. 739-745
-
-
Khimani, A.H.1
Mhashilkar, A.M.2
Mikulskis, A.3
O'Malley, M.4
Liao, J.5
Golenko, E.E.6
Mayer, P.7
Chada, S.8
Killian, J.B.9
Lott, S.T.10
-
29
-
-
18444417714
-
Validation of oligonucleotide microarray data using microfluidic low-density arrays: A new statistical method to normalize real-time RT-PCR data
-
L. V. Abruzzo, K. Y. Lee, A. Fuller, A. Silverman, M. J. Keating, L. J. Medeiros and K. R. Coombes, Validation of oligonucleotide microarray data using microfluidic low-density arrays: A new statistical method to normalize real-time RT-PCR data. Biotechniques 38, 785-792 (2005).
-
(2005)
Biotechniques
, vol.38
, pp. 785-792
-
-
Abruzzo, L.V.1
Lee, K.Y.2
Fuller, A.3
Silverman, A.4
Keating, M.J.5
Medeiros, L.J.6
Coombes, K.R.7
-
30
-
-
28444495830
-
The hypoxic proteome is influenced by gene-specific changes in mRNA translation
-
M. Koritzinsky, R. Seigneuric, M. G. Magagnin, T. Van Den Beucken, P. Lambin and B. G. Wouters, The hypoxic proteome is influenced by gene-specific changes in mRNA translation. Radiother. Oncol. 76, 177-186 (2005).
-
(2005)
Radiother. Oncol
, vol.76
, pp. 177-186
-
-
Koritzinsky, M.1
Seigneuric, R.2
Magagnin, M.G.3
Van Den Beucken, T.4
Lambin, P.5
Wouters, B.G.6
-
31
-
-
31544442938
-
Radiation-induced changes in gene expression involve recruitment of existing messenger RNAs to and away from polysomes
-
X. Lu, L. De La Pena, C. Barker, K. Camphausen and P. J. Tofilon, Radiation-induced changes in gene expression involve recruitment of existing messenger RNAs to and away from polysomes. Cancer Res. 66, 1052-1061 (2006).
-
(2006)
Cancer Res
, vol.66
, pp. 1052-1061
-
-
Lu, X.1
De La Pena, L.2
Barker, C.3
Camphausen, K.4
Tofilon, P.J.5
-
32
-
-
33747826874
-
Preventing or reducing late side effects of radiation therapy: Radiobiology meets molecular pathology
-
S. M. Bentzen, Preventing or reducing late side effects of radiation therapy: Radiobiology meets molecular pathology. Nat. Rev. Cancer 9, 702-13 (2006).
-
(2006)
Nat. Rev. Cancer
, vol.9
, pp. 702-713
-
-
Bentzen, S.M.1
-
33
-
-
21244460339
-
Identification of differentially expressed genes contributing to radioresistance in lung cancer cells using microarray analysis
-
W. F. Guo, R. X. Lin, J. Huang, Z. Zhou, J. Yang, G. Z. Guo and S. Q. Wang, Identification of differentially expressed genes contributing to radioresistance in lung cancer cells using microarray analysis. Radiat. Res. 164, 27-35 (2005).
-
(2005)
Radiat. Res
, vol.164
, pp. 27-35
-
-
Guo, W.F.1
Lin, R.X.2
Huang, J.3
Zhou, Z.4
Yang, J.5
Guo, G.Z.6
Wang, S.Q.7
-
34
-
-
0242361561
-
Oncogenic Ras and Akt signaling contribute to glioblastoma formation by differential recruitment of existing mRNAs to polysomes
-
V. K. Rajasekhar, A. Viale, N. D. Socci, M. Wiedmann, X. Hu and E. C. Holland, Oncogenic Ras and Akt signaling contribute to glioblastoma formation by differential recruitment of existing mRNAs to polysomes. Mol. Cell 12, 889-901 (2003).
-
(2003)
Mol. Cell
, vol.12
, pp. 889-901
-
-
Rajasekhar, V.K.1
Viale, A.2
Socci, N.D.3
Wiedmann, M.4
Hu, X.5
Holland, E.C.6
-
35
-
-
32944460143
-
Messenger RNAs under differential translational control in Kiras-transformed cells
-
J. Spence, B. M. Duggan, C. Eckhardt, M. McClelland and D. Mercola, Messenger RNAs under differential translational control in Kiras-transformed cells. Mol. Cancer Res. 4, 47-60 (2006).
-
(2006)
Mol. Cancer Res
, vol.4
, pp. 47-60
-
-
Spence, J.1
Duggan, B.M.2
Eckhardt, C.3
McClelland, M.4
Mercola, D.5
-
36
-
-
24744453768
-
Identification of novel p53 target genes in ionizing radiation response
-
K. Y. Jen and V. G. Cheung, Identification of novel p53 target genes in ionizing radiation response. Cancer Res. 65, 7666-7673 (2005).
-
(2005)
Cancer Res
, vol.65
, pp. 7666-7673
-
-
Jen, K.Y.1
Cheung, V.G.2
-
37
-
-
0141869078
-
The RAS signal transduction pathway and its role in radiation sensitivity
-
W. G. McKenna, R. J. Muschel, A. K. Gupta, S. M. Hahn and E. J. Bernhard, The RAS signal transduction pathway and its role in radiation sensitivity. Oncogene 22, 5866-5875 (2003).
-
(2003)
Oncogene
, vol.22
, pp. 5866-5875
-
-
McKenna, W.G.1
Muschel, R.J.2
Gupta, A.K.3
Hahn, S.M.4
Bernhard, E.J.5
-
38
-
-
33751278260
-
Ras induces chromosome instability and abrogation of the DNA damage response
-
A. Abulaiti, A. J. Fukaris, O. M. Tsygankova and J. L. Meinkoth, Ras induces chromosome instability and abrogation of the DNA damage response. Cancer Res. 66, 10505-10512 (2006).
-
(2006)
Cancer Res
, vol.66
, pp. 10505-10512
-
-
Abulaiti, A.1
Fukaris, A.J.2
Tsygankova, O.M.3
Meinkoth, J.L.4
-
39
-
-
33751304712
-
A conserved RAS/mitogen-activated protein kinase pathway regulates DNA damage-induced cell death post irradiation in Radelegans
-
J. B. Weidhaas, D. M. Eisenmann, J. M. Holub and S. V. Nallur, A conserved RAS/mitogen-activated protein kinase pathway regulates DNA damage-induced cell death post irradiation in Radelegans. Cancer Res. 66, 10434-10438 (2006).
-
(2006)
Cancer Res
, vol.66
, pp. 10434-10438
-
-
Weidhaas, J.B.1
Eisenmann, D.M.2
Holub, J.M.3
Nallur, S.V.4
|