Multimodal, multidimensional models of mouse brain

Epilepsia

Volumn 48, Issue SUPPL. 4, 2007, Pages 75-81

  MacKenzie Graham, Allan J ^a   Lee, Erh Fang ^a   Dinov, Ivo D ^a   Yuan, Heng ^a   Jacobs, Russell E ^b   Toga, Arthur W ^a,c  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Anatomy; Atlas; Neonatal; Probabilistic

Indexed keywords

ANALYTIC METHOD; ANIMAL MODEL; ARTICLE; BRAIN; COMPARATIVE STUDY; CONTROLLED STUDY; DATA ANALYSIS; DATA BASE; DIGITAL IMAGING; DISEASE MODEL; EPILEPSY; MALE; MEDICAL LITERATURE; MOUSE; NEUROANATOMY; NEWBORN; NONHUMAN; PRIORITY JOURNAL;

AGE FACTORS; ANATOMY, ARTISTIC; ANIMALS; ANIMALS, NEWBORN; ATLASES; BRAIN; COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; DISEASE MODELS, ANIMAL; EPILEPSY; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MAGNETIC RESONANCE IMAGING; MALE; MEDICAL ILLUSTRATION; MICE; MICE, INBRED C57BL; MICE, MUTANT STRAINS; MODELS, ANATOMIC; TERMINOLOGY;

EID: 34548351728     PISSN: 00139580     EISSN: 15281167     Source Type: Journal    
DOI: 10.1111/j.1528-1167.2007.01244.x     Document Type: Article

References (46)

1. Ahrens ET, Laidlaw DH, Readhead C, Brosnan CF, Fraser SE, Jacobs RE 1998) MR microscopy of transgenic mice that spontaneously acquire experimental allergic encephalomyelitis. Magn Reson Med 40 : 119 132.
2. Baldock R, Bard J, Brune R, Hill B, Kaufman M, Opstad K, Smith D, Stark M, Waterhouse A, Yang Y, Davidson D 2001) The Edinburgh Mouse Atlas: using the CD. Brief Bioinform 2 : 159 169.
3. Barclay J, Balaguero N, Mione M, Ackerman SL, Letts VA, Brodbeck J, Canti C, Meir A, Page KM, Kusumi K, et al 2001) Ducky mouse phenotype of epilepsy and ataxia is associated with mutations in the Cacna2d2 gene and decreased calcium channel current in cerebellar Purkinje cells. J Neurosci 21 : 6095 6104.
4. Bard JL, Kaufman MH, Dubreuil C, Brune RM, Burger A, Baldock RA, Davidson DR 1998) An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature. Mech Dev 74 : 111 120.
5. Benveniste H, Qui H, Hedlund LW, D'Ercole F, Johnson GA 1998) Spinal cord neural anatomy in rats examined by in vivo magnetic resonance microscopy. Reg Anesth Pain Med 23 : 589 599.
6. Benveniste H, Kim K, Zhang L, Johnson GA 2000) Magnetic resonance microscopy of the C57BL mouse brain. Neuroimage 11 : 601 611.
7. Bowden DM, Martin RF 1995) NeuroNames brain hierarchy. Neuroimage 2 : 63 83.
8. Cannestra AF, Santori EM, Holmes CJ, Toga AW 1997) A three-dimensional multimodality brain map of the nemestrina monkey. Brain Res Bull 43 : 141 148.
9. Cox GA, Lutz CM, Yang CL, Biemesderfer D, Bronson RT, Fu A, Aronson PS, Noebels JL, Frankel WN 1997) Sodium/hydrogen exchanger gene defect in slow-wave epilepsy mutant mice. Cell 91 : 139 148.
10. Dhenain M, Ruffins SW, Jacobs RE 2001) Three-dimensional digital mouse atlas using high-resolution MRI. Developmental Biology 232 : 458 470.
11. Farrar TC, Becker ED 1971) Pulse and Fourier Transform NMR. Academic Press, New York.
12. Franklin KBJ, Paxinos G 1997) The mouse brain in stereotaxic coordinates. Academic Press, San Diego.
13. Fukushima E, Roeder SBW 1981) Experimental Pulse NMR. Addison-Wesley, Reading, MA.
14. Gallyas F 1979) Silver staining of myelin by means of physical development. Neurol Res 1 : 203 209.
15. Ghosh P, O'Dell M, Narasimhan PT, Fraser SE, Jacobs RE 1994) Mouse lemur microscopic MRI brain atlas. Neuroimage 1 : 345 349.
16. Gibaud B, Garlatti S, Barillot C, Faure E 1998) Computerized brain atlases as decision support systems: a methodological approach. Artif Intell Med V14 : 83 100.
17. Hof PR, Young WG, Bloom FE, Belichenko PV, Celio MR 2000) Comparative cytoarchitectonic atlas of the C57BL 6 and 129 Sv mouse brains. Elsevier, Amsterdam New York.
18. Hosford DA, Clark S, Cao Z, Wilson WA Jr., Lin FH, Morrisett RA, Huin A 1992) The role of GABAB receptor activation in absence seizures of lethargic (lh/lh) mice. Science 257 : 398 401.
19. Jacobowitz DM, Abbott LC 1998) Chemoarchitectonic atlas of the developing mouse brain. CRC Press, Boca Raton.
20. Jacobs RE, Ahrens ET, Dickinson ME, Laidlaw D 1999) Towards a microMRI atlas of mouse development. Comput Med Imaging Graph 23 : 15 24.
21. Kaufman MH 1992) The atlas of mouse development. Academic Press, London San Diego.
22. Lee EF, Jacobs RE, Dinov I, Leow A, Toga AW 2005) Standard atlas space for C57BL/6J neonatal mouse brain. Anat Embryol (Berl) 210 : 245 263.
23. MacKenzie-Graham A, Lee EF, Dinov ID, Bota M, Shattuck DW, Ruffins S, Yuan H, Konstantinidis F, Pitiot A, Ding Y, Hu G, Jacobs RE, Toga AW. (2004) A multimodal, multidimensional atlas of the C57BL/6J mouse brain. J Anat 204 : 93 102.
24. Mazziotta JC, Toga AW, Evans A, Fox P, Lancaster J 1995) A probabilistic atlas of the human brain: theory and rationale for its development. The International Consortium for Brain Mapping (ICBM). Neuroimage 2 : 89 101.
25. Noebels JL, Sidman RL 1979) Inherited epilepsy: spike-wave and focal motor seizures in the mutant mouse tottering. Science 204 : 1334 1336.
26. Narr K, Thompson P, Sharma T, Moussai J, Zoumalan C, Rayman J, Toga A 2001) Three-dimensional mapping of gyral shape and cortical surface asymmetries in schizophrenia: gender effects. Am J Psychiatry 158 : 244 255.
27. Noebels JL, Qiao X, Bronson RT, Spencer C, Davisson MT 1990) Stargazer: a new neurological mutant on chromosome 15 in the mouse with prolonged cortical seizures. Epilepsy Res 7 : 129 135.
28. Noebels JL, Fariello RG, Jobe PC, Lasley SM, Marescaux C 1998) Genetic models of generalized epilepsy. In Engel J, Pedley TA (Eds) Epilepsy: a comprehensive textbook. Lippincott-Raven, Philadelphia, pp. 457 465.
29. Paxinos G, Franklin KBJ 2001) The mouse brain in stereotaxic coordinates, 2nd edn. Academic, San Diego.
30. Rex DE, Ma JQ, Toga AW 2003) The LONI pipeline processing environment. Neuroimage 19 : 1033 1048.
31. Ringwald M, Baldock R, Bard J, Kaufman M, Eppig JT, Richardson JE, Nadeau JH, Davidson D 1994) A database for mouse development. Science 265 : 2033 2034.
32. Rosen GD, La Porte NT, Diechtiareff B, Pung CJ, Nissanov J, Gustafson C, Bertrand L, Gefen S, Fan Y, Tretiak OJ, et al 2003) Informatics center for mouse genomics: the dissection of complex traits of the nervous system. Neuroinformatics 1 : 327 342.
33. Schambra UB, Lauder JM, Silver J 1992) Atlas of the prenatal mouse brain. Academic Press, San Diego.
34. Shattuck DW, Leahy RM 2002) BrainSuite: an automated cortical surface identification tool. Med Image Anal 6 : 129 142.
35. Simmons DM, Swanson LW 1993) The Nissl Stain. In Wouterlood FG (Ed) Neuroscience protocols. Elsevier, Amsterdam, pp. 93-050-012-001 093-050-012-007.
36. Smith BR, Johnson GA, Groman EV, Linney E 1994) Magnetic Resonance Microscopy of Mouse Embryos. Proc Natl Acad Sci USA V91 : 3530 3533.
37. Sowell ER, Levitt J, Thompson PM, Holmes CJ, Blanton RE, Kornsand DS, Caplan R, McCracken J, Asarnow R, Toga AW 2000) Brain abnormalities in early-onset schizophrenia spectrum disorder observed with statistical parametric mapping of structural magnetic resonance images. Amer J Psychiatry 157 : 1475 1484.
38. Swanson LW 1992) Brain maps: structure of the rat brain. Elsevier, Amsterdam New York.
39. Swanson LW 1998) Brain maps: structure of the rat brain: a laboratory guide with printed and electronic templates for data, models, and schematics, 2nd rev. edn. Elsevier, Amsterdam.
40. Swanson LW 2001) Interactive brain maps and atlases. In Arbib MA, Grethe JS (Eds) Computing the brain: a guide to neuroinformatics. Academic Press, San Diego, pp. 167 177.
41. Thompson PM, Giedd JN, Woods RP, MacDonald D, Evans AC, Toga AW 2000) Growth patterns in the developing brain detected by using continuum mechanical tensor maps. Nature 404 : 190 193.
42. Toga AW, Ambach K, Quinn B, Hutchin M, Burton JS 1994) Postmortem anatomy from cryosectioned whole human brain. J Neurosci Methods 54 : 239 252.
43. Toga AW, Santori EM, Hazani R, Ambach K 1995) A 3D digital map of rat brain. Brain Res Bull 38 : 77 85.
44. Toga AW, Thompson PM 1998) Multimodal Brain Atlases. In Wong S (Ed) Advances in biomedical image databases. Kluwer Academic Press, Dordrecht, The Netherlands, pp. 53 88.
45. Woods RP, Grafton ST, Holmes CJ, Cherry SR, Mazziotta JC 1998a) Automated image registration: I. General methods and intrasubject, intramodality validation. J Comput Assist Tomogr V22 : 139 152.
46. Woods RP, Grafton ST, Watson JDG, Sicotte NL, Mazziotta JC 1998b) Automated image registration: II. Intersubject validation of linear and nonlinear models. J Comput Assist Tomogr V22 : 153 165.