Characterization of the NADP malic enzyme gene family in the facultative, single-cell C4 monocot Hydrilla verticillata

Photosynthesis Research

Volumn 94, Issue 1, 2007, Pages 43-57

  Estavillo, Gonzalo M ^a,b   Rao, Srinath K ^a,c   Reiskind, Julia B ^a   Bowes, George ^a  

^a UNIVERSITY OF FLORIDA   (United States)

^b AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^c QUEEN S UNIVERSITY   (Canada)

Author keywords

Aquatic angiosperm; C4 photosynthesis; Expression pattern; Gene family; Hydrilla verticillata; Isoforms; NADP malic enzyme; Recombinant protein

Indexed keywords

COMPLEMENTARY DNA; ISOENZYME; MALATE DEHYDROGENASE; MALATE DEHYDROGENASE (OXALOACETATE DECARBOXYLATING) (NADP+); MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+); RECOMBINANT PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BIOLOGY; CLASSIFICATION; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; HYDROCHARITACEAE; ISOLATION AND PURIFICATION; KINETICS; METABOLISM; MOLECULAR CLONING; PHYLOGENY; PROMOTER REGION;

CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; DNA, COMPLEMENTARY; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; HYDROCHARITACEAE; ISOENZYMES; KINETICS; MALATE DEHYDROGENASE; PHYLOGENY; PROMOTER REGIONS (GENETICS); RECOMBINANT PROTEINS; TRANSCRIPTION, GENETIC;

HYDRILLA VERTICILLATA; LILIOPSIDA; MAGNOLIOPHYTA; ZEA MAYS;

EID: 34548168644     PISSN: 01668595     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11120-007-9212-y     Document Type: Article

References (64)

1. 4 plant without Kranz anatomy. Syst Bot 30:290-301
2. Asami S, Inoue K, Matsumoto K, Murachi A, Akazawa T (1979) NADP-malic enzyme from maize leaf: purification and properties. Arch Biochem Biophys 194:503-510
3. 4 plant Flaveria bidentis: nucleotide substrate specificity. Arch Biochem Biophys 345:251-258
4. 2 concentrating mechanism. J Exp Bot 57:249-265
5. Bhatia IS, Ahuja KL, Sukhija PS (1979) Fatty acid synthesis in Hydrilla chloroplasts. Physiol Plant 47:81-86
6. 4 systems. Funct Plant Biol 29:379-392
7. Carlson JE, Tulsieram LK, Glaubitz JC, Luk VWK, Kauffeldt C, Rutledge R (1991) Segregation of random amplified DNA Markers in F1 progeny of conifers. Theor Appl Genet 83:194-200
8. 2 fixation in Egeria densa, a submersed aquatic species. Plant Physiol 123:1611-1622
9. Casati P, Spampinato CP, Andreo CS (1997) Characteristics and physiological function of NADP-malic enzyme from wheat. Plant Cell Physiol 38:928-934
10. Chang GG, Tong L (2003) Structure and function of malic enzymes, a new class of oxidative decarboxylases. Biochemistry 42:12721-12733
11. Chase MW (2004) Monocot relationships: an overview. Am J Bot 91:1645-1655
12. Cheng YX, Takano T, Zhang XX, Yu S, Liu DL, Liu SK (2006) Expression, purification, and characterization of two NADP-malic enzymes of rice (Oryza sativa L.) in Escherichia coli. Protein Expr Purif 45:200-205
13. Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 31:3497-3500
14. Chi W, Yang J, Wu N, Zhang F (2004) Four rice genes encoding NADP malic enzyme exhibit distinct expression profiles. Biosci Biotechnol Biochem 68:1865-1874
15. Cushman JC (1992) Characterization and expression of a NADP-malic enzyme cDNA induced by salt stress from the facultative crassulacean acid metabolism plant, Mesembryanthemum crystallinum. Eur J Biochem 208:259-266
16. 4 NADP-malic enzyme. J Biol Chem 282:6053-6060
17. 4 NADP-malic enzyme-Expression in Escherichia coli and characterization of site-directed mutants at the putative nucleotide-binding sites. J Biol Chem 278:13757-13764
18. Drincovich MF, Casati P, Andreo CS (2001) NADP-malic enzyme from plants: a ubiquitous enzyme involved in different metabolic pathways. FEBS Lett 490:1-6
19. 4 photosynthesis in Flaveria species-Isoforms of NADP-malic enzyme. Plant Physiol 117:733-744
20. +-malic enzyme from maize leaves. Physiol Plant 81:462-466
21. Edwards GE, Andreo CS (1992) NADP-malic enzyme from plants. Phytochemistry 31:1845-1857
22. 4 photosynthesis versus the dual-cell (Kranz) paradigm. Annl Rev Plant Biol 55:173-196
23. Emanuelsson O, Nielsen H, Von Heijne G (1999) ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites. Protein Sci 8:978-984
24. Ferreyra MLF, Andreo CS, Podesta FE (2003) Purification and physical and kinetic characterization of a photosynthetic NADP-dependent malic enzyme from the CAM plant Aptenia cordifolia. Plant Sci 164:95-102
25. Grover SD, Canellas PF, Wedding RT (1981) Purification of NAD malic enzyme from potato and investigation of some physical and kinetic properties. Arch Biochem Biophys 209:396-407
26. 4 pathway photosynthesis. Arch Biochem Biophys 179:361-369
27. Holaday AS, Salvucci ME, Bowes G (1983) Variable photosynthesis photo-respiration ratios in Hydrilla and other submersed aquatic macrophyte species. Can J Bot-Revue Canadienne De Botanique 61:229-236
28. Honda H, Akagi H, Shimada H (2000) An isozyme of the NADP-malic enzyme of a CAM plant, Aloe arborescens, with variation on conservative amino acid residues. Gene 243:85-92
29. Hua Z, Wang H, Chen D, Chen Y, Zhu D (1994) Enhancement of expression of human granulocyte-macrophage colony stimulating factor by argU gene product in Escherichia coli. Biochem Mol Biol Int 32:537-543
30. Iglesias AA, Andreo CS (1989) Purification of NADP-malic enzyme and phosphoenolpyruvate carboxylase from sugar cane leaves. Plant Cell Physiol 30:399-405
31. 2 concentrating mechanisms in photosynthetic microorganisms. Annu Rev Plant Physiol Plant Mol Biol 50:539-570
32. 4 photosynthetic modifications in the evolutionary transition from land to water in aquatic grasses. Oecologia 116:85-97
33. 2-responsive transcriptional activation of Cah1 encoding a periplasmic carbonic anhydrase Ckhlamydomonas reinhardtii. Plant Physiol 133:783-793
34. 4 Flaveria species. Plant Physiol 128:140-149
35. 4 Flaveria species. Plant Physiol 128:125-139
36. Lara MV, Drincovich MF, Muller GL, Maurino VG, Andreo CS (2005) NADP-malic enzyme and Hsp70:Co-purification of both proteins and modification of NADP-malic enzyme properties by association with Hsp70. Plant Cell Physiol 46:997-1006
37. 4-type photosynthesis in Hydrilla verticillata. Plant Physiol 115:1681-1689
38. 4 photosynthesis. Plant Physiol 111:1251-1261
39. Maurino VG, Drincovich MF, Andreo CS (1996) NADP-malic enzyme isoforms in maize leaves. Biochem Mol Biol Int 38:239-250
40. Maurino VG, Saigo M, Andreo CS, Drincovich MF (2001) Non-photosynthetic 'malic enzyme' from maize: a constituvely expressed enzyme that responds to plant defence inducers. Plant Mol Biol 45:409-420
41. 4 photosynthesis. Int J Plant Sci 164:S43-S54
42. 2+ concentration in intact chloroplasts in the dark: I. Studies with the inophore A23187. Plant Physiol 67:985-989
43. Prestridge DS (1991) Signal Scan-a computer program that scans DNA sequences for eukaryotic transcriptional elements. Bioinformatics 7:203-206
44. 4 photosynthetic types. Plant Mol Biol 17:371-383
45. 4 plant Hydrilla verticillata. Photosynth Res 88:173-183
46. 4 system of Hydrilla verticillata. Plant Physiol 130:876-886
47. Rao SK, Reiskind JB, Bowes G (2006b) Light regulation of the photosynthetic phosphoenolpyruvate carboxylase (PEPC) in Hydrilla verticillata. Plant Cell Physiol 47:1206-1216
48. 4 pathway in carbon accumulation and fixation in a marine diatom. Plant Physiol 135:2106-2111
49. 4-like photosynthetic characteristics. Proc Natl Acad Sci USA 88:2883-2887
50. 2-concentrating mechanism in Hydrilla, a submersed monocot. Plant Cell Environ 20:211-220
51. 4 photosynthesis. New Phytol 161:341-370
52. 4 NADP-malic enzyme: a novel dimeric malic enzyme with high specific activity. Plant Mol Biol 55:97-107
53. Salvucci ME, Bowes G (1981) Induction of reduced photorespiratory activity in submersed and amphibious aquatic macrophytes. Plant Physiol 67:335-340
54. Schagger H, Vonjagow G (1991) Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form. Anal Biochem 199:223-231
55. Shearer HL, Dennis DT (2005) Characterization and functional expression in yeast of a cDNA encoding NADP-dependent malic enzyme from castor oil seed. Can J Bot 83:237-241
56. Spreitzer RJ, Salvucci ME (2002) Rubisco: structure, regulatory interactions, and possibilities for a better enzyme. Annl Rev Plant Biol 53:449-475
57. Swofford DL (2002) PAUP*4.0: phylogenetic analysis using parsimony (*and other methods). Sinauer Associates, Sunderland, MA
58. Takeuchi K, Akagi H, Kamasawa N, Osumi M, Honda H (2000) Aberrant chloroplasts in transgenic rice plants expressing a high level of maize NADP-dependent malic enzyme. Planta 211:265-274
59. 4 NADP-dependent malic enzymes are encoded by distinct genes derived from a plastid-localized ancestor. Plant Mol Biol 50:635-652
60. 4 photosynthesis without Kranz anatomy in Bienertia cycloptera (Chenopodiaceae). Plant J 31:649-662
61. 4 plant photosynthesis. Nature 414:543-546
62. Wheeler MCG, Tronconi MA, Drincovich MF, Andreo CS, Flugge UI, Maurino VG (2005) A comprehensive analysis of the NADP-malic enzyme gene family of Arabidopsis. Plant Physiol 139:39-51
63. Wishart DS, Fortin S (2001) The BioTools Suite-a comprehensive suite of platform-independent bioinformatics tools. Mol Biotechnol 19:59-77
64. Zahn K (1996) Overexpression of an mRNA dependent on rare codons inhibits protein synthesis and cell growth. J Bacteriol 178:2926-2933