메뉴 건너뛰기




Volumn 17, Issue 7, 2007, Pages 1204-1207

Functional analysis of the residues C770 and G771 of E. coli 16S rRNA implicated in forming the intersubunit bridge B2c of the ribosome

Author keywords

16S rRNA; Intersubunit bridge; Specialized ribosome; Subunit association

Indexed keywords

NUCLEOTIDE; PYRIMIDINE; RIBOSOME RNA; RNA 16S; RNA 23S; SUCROSE;

EID: 34547990727     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (7)

References (28)
  • 1
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
    • Ban, N., P. Nissen, J. Hansen, P. B. Moore, and T. A. Steitz. 2000. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science 289: 905-920.
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 2
    • 0017618121 scopus 로고
    • Protection of specific sites in 16S RNA from chemical modification by association of 30S and 50S ribosomes
    • Chapman, N. M. and H. F. Noller. 1977. Protection of specific sites in 16S RNA from chemical modification by association of 30S and 50S ribosomes. J. Mol. Biol. 109: 131-149.
    • (1977) J. Mol. Biol , vol.109 , pp. 131-149
    • Chapman, N.M.1    Noller, H.F.2
  • 4
    • 0038275890 scopus 로고    scopus 로고
    • Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement
    • Gao, H., J. Sengupta, and M. Valle et al. 2003. Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement. Cell 113: 789-801.
    • (2003) Cell , vol.113 , pp. 789-801
    • Gao, H.1    Sengupta, J.2    Valle, M.3
  • 6
    • 0018782219 scopus 로고
    • Protection of specific sites in 23S and 5S RNA from chemical modification by association of 30S and 50S ribosomes
    • Herr, W. and H. F. Noller. 1979. Protection of specific sites in 23S and 5S RNA from chemical modification by association of 30S and 50S ribosomes. J. Mol. Biol. 130: 421-432.
    • (1979) J. Mol. Biol , vol.130 , pp. 421-432
    • Herr, W.1    Noller, H.F.2
  • 7
    • 85016731055 scopus 로고
    • Using PCR to engineer DNA
    • H. A. Erlich ed, Stockton Press, New York, NY, U.S.A
    • Higuchi, R. 1989. Using PCR to engineer DNA, pp. 61-70. In H. A. Erlich (ed.), PCR Technology. Stockton Press, New York, NY, U.S.A.
    • (1989) PCR Technology , pp. 61-70
    • Higuchi, R.1
  • 8
    • 22544432541 scopus 로고    scopus 로고
    • Analysis of in vivo interaction of HCV NS3 protein and specific RNA aptamer with yeast three-hybrid system
    • Hwang, B. and S. W. Lee. 2005. Analysis of in vivo interaction of HCV NS3 protein and specific RNA aptamer with yeast three-hybrid system. J. Microbiol. Biotechnol. 15: 660-664.
    • (2005) J. Microbiol. Biotechnol , vol.15 , pp. 660-664
    • Hwang, B.1    Lee, S.W.2
  • 9
    • 0029905958 scopus 로고    scopus 로고
    • Genetic analysis of the Shine-Dalgarno interaction: Selection of alternative functional mRNA-rRNA combinations
    • Lee, K., C. A. Holland-Staley, and P. R. Cunningham. 1996. Genetic analysis of the Shine-Dalgarno interaction: selection of alternative functional mRNA-rRNA combinations. RNA 2: 1270-1285.
    • (1996) RNA , vol.2 , pp. 1270-1285
    • Lee, K.1    Holland-Staley, C.A.2    Cunningham, P.R.3
  • 10
    • 0031588021 scopus 로고    scopus 로고
    • In vivo determination of RNA structure-function relationships: Analysis of the 790 loop in ribosomal RNA
    • Lee, K., S. Varma, J. Santalucia Jr., and P. R. Cunningham. 1997. In vivo determination of RNA structure-function relationships: Analysis of the 790 loop in ribosomal RNA. J. Mol. Biol. 269: 732-743.
    • (1997) J. Mol. Biol , vol.269 , pp. 732-743
    • Lee, K.1    Varma, S.2    Santalucia Jr., J.3    Cunningham, P.R.4
  • 11
    • 0035513584 scopus 로고    scopus 로고
    • Genetic approaches to studying protein synthesis: Effects of mutations at Ψ516 and A535 in Escherichia coli 16S rRNA
    • Lee, K., C. A. Holland-Staley, and P. R. Cunningham. 2001. Genetic approaches to studying protein synthesis: Effects of mutations at Ψ516 and A535 in Escherichia coli 16S rRNA. J. Nutr. 131: 2994S-3004S.
    • (2001) J. Nutr , vol.131
    • Lee, K.1    Holland-Staley, C.A.2    Cunningham, P.R.3
  • 12
    • 0033534198 scopus 로고    scopus 로고
    • Nucleotides in 23S rRNA protected by the association of 30S and 50S ribosomal subunits
    • Merryman, C., D. Moazed, G. Daubresse, and H. F. Noller. 1999. Nucleotides in 23S rRNA protected by the association of 30S and 50S ribosomal subunits. J. Mol. Biol. 285: 107-113.
    • (1999) J. Mol. Biol , vol.285 , pp. 107-113
    • Merryman, C.1    Moazed, D.2    Daubresse, G.3    Noller, H.F.4
  • 13
    • 0026529433 scopus 로고
    • Identification of intermolecular RNA cross-links at the subunit interface of the Escherichia coli ribosome
    • Mitchell, P., M. Osswald, and R. Brimacombe. 1992 Identification of intermolecular RNA cross-links at the subunit interface of the Escherichia coli ribosome. Biochemistry 31: 3004-3011.
    • (1992) Biochemistry , vol.31 , pp. 3004-3011
    • Mitchell, P.1    Osswald, M.2    Brimacombe, R.3
  • 14
    • 0025737972 scopus 로고
    • A functional pseudoknot in 16S ribosomal RNA
    • Powers, T. and H. F. Noller. 1991. A functional pseudoknot in 16S ribosomal RNA. EMBO J. 10: 2203-2214.
    • (1991) EMBO J , vol.10 , pp. 2203-2214
    • Powers, T.1    Noller, H.F.2
  • 15
    • 0037154986 scopus 로고    scopus 로고
    • Ribosome structure and the mechanism of translation
    • Ramakrishnan, V. 2002. Ribosome structure and the mechanism of translation. Cell 108: 557-572.
    • (2002) Cell , vol.108 , pp. 557-572
    • Ramakrishnan, V.1
  • 16
    • 33644818227 scopus 로고    scopus 로고
    • Interactions of the release factor RF1 with the ribosome as revealed by cryo-EM
    • Rawat, U., H. Gao, A. Zavialov, R. Gursky, M. Ehrenberg, and J. Frank. 2006. Interactions of the release factor RF1 with the ribosome as revealed by cryo-EM. J. Mol. Biol. 357: 1144-1153.
    • (2006) J. Mol. Biol , vol.357 , pp. 1144-1153
    • Rawat, U.1    Gao, H.2    Zavialov, A.3    Gursky, R.4    Ehrenberg, M.5    Frank, J.6
  • 18
    • 0034268836 scopus 로고    scopus 로고
    • Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution
    • Schluenzen, F., A. Tocilj, and R. Zarivach et al. 2000. Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution. Cell 102: 615-623.
    • (2000) Cell , vol.102 , pp. 615-623
    • Schluenzen, F.1    Tocilj, A.2    Zarivach, R.3
  • 19
    • 33846512779 scopus 로고    scopus 로고
    • Some universal characteristics of intertidal bacterial diversity as revealed by 16S rRNA gene-based PCR clone analysis
    • Shuang, J. L., C. H. Lui, S. Q. An, Y. Xing, G. Q. Zheng, and Y. F. Shen. 2006. Some universal characteristics of intertidal bacterial diversity as revealed by 16S rRNA gene-based PCR clone analysis. J. Microbiol. Biotechnol. 16: 1882-1889.
    • (2006) J. Microbiol. Biotechnol , vol.16 , pp. 1882-1889
    • Shuang, J.L.1    Lui, C.H.2    An, S.Q.3    Xing, Y.4    Zheng, G.Q.5    Shen, Y.F.6
  • 22
    • 0035798380 scopus 로고    scopus 로고
    • Structure of the 80S ribosome from Saccharomyces cerevisiae: TRNA-ribosome and subunit-subunit interactions
    • Spahn, C. M., R. Beckmann, N. Eswar, P. A. Penczek, A. Sali, G. Blobel, and J. Frank. 2001. Structure of the 80S ribosome from Saccharomyces cerevisiae: tRNA-ribosome and subunit-subunit interactions. Cell 107: 373-386.
    • (2001) Cell , vol.107 , pp. 373-386
    • Spahn, C.M.1    Beckmann, R.2    Eswar, N.3    Penczek, P.A.4    Sali, A.5    Blobel, G.6    Frank, J.7
  • 23
    • 4644247805 scopus 로고    scopus 로고
    • Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: The IRES functions as an RNA-based translation factor
    • Spahn, C. M., E. Jan, A. Mulder, R. A. Grassucci, P. Sarnow, and J. Frank. 2004. Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: The IRES functions as an RNA-based translation factor. Cell 118: 465-475.
    • (2004) Cell , vol.118 , pp. 465-475
    • Spahn, C.M.1    Jan, E.2    Mulder, A.3    Grassucci, R.A.4    Sarnow, P.5    Frank, J.6
  • 25
    • 33646564357 scopus 로고    scopus 로고
    • Genetic analysis of a structural motif within the conserved 530 stem-loop of Escherichia coli 16S rRNA
    • Szatkiewicz, J. P., H. Cho, S. M. Ryou, J. M. Kim, P. R. Cunningham, and K. Lee. 2006. Genetic analysis of a structural motif within the conserved 530 stem-loop of Escherichia coli 16S rRNA. J. Microbiol. Biotechnol. 16: 569-575.
    • (2006) J. Microbiol. Biotechnol , vol.16 , pp. 569-575
    • Szatkiewicz, J.P.1    Cho, H.2    Ryou, S.M.3    Kim, J.M.4    Cunningham, P.R.5    Lee, K.6
  • 26
    • 13444306224 scopus 로고    scopus 로고
    • X-ray crystallography study on ribosome recycling: The mechanism of binding and action of RRF on the 50S ribosomal subunit
    • Wilson, D. N., F. Schluenzen, J. M. Harms, T. Yoshida, T. Ohkubo, R. Albrecht, J. Buerger, Y. Kobayashi, and P. Fucini. 2005. X-ray crystallography study on ribosome recycling: The mechanism of binding and action of RRF on the 50S ribosomal subunit. EMBO J. 24: 251-260.
    • (2005) EMBO J , vol.24 , pp. 251-260
    • Wilson, D.N.1    Schluenzen, F.2    Harms, J.M.3    Yoshida, T.4    Ohkubo, T.5    Albrecht, R.6    Buerger, J.7    Kobayashi, Y.8    Fucini, P.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.