-
1
-
-
33845722419
-
Factor analysis and AIC
-
Akaike,H. (1987) Factor analysis and AIC. Psychometrika, 52, 317-332.
-
(1987)
Psychometrika
, vol.52
, pp. 317-332
-
-
Akaike, H.1
-
2
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
Alter,O. et al. (2000) Singular value decomposition for genome-wide expression data processing and modeling. Proc. Natl Acad. Sci. USA, 97, 10101-10106.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
-
3
-
-
0037452966
-
Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms
-
Alter,O. et al. (2003) Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms. Proc. Natl Acad. Sci. USA, 100, 3351-3356.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 3351-3356
-
-
Alter, O.1
-
4
-
-
13844253637
-
A Bayesian approach to reconstructing genetic regulatory networks with hidden factors
-
Beal,M.J. et al. (2005) A Bayesian approach to reconstructing genetic regulatory networks with hidden factors. Bioinformatics, 21, 349-356.
-
(2005)
Bioinformatics
, vol.21
, pp. 349-356
-
-
Beal, M.J.1
-
5
-
-
23744491001
-
Predicting transcription factor activities from combined analysis of microarray and ChIP data: A partial least squares approach
-
Boulesteix,A.L. and Strimmer,K. (2005) Predicting transcription factor activities from combined analysis of microarray and ChIP data: A partial least squares approach. Theor. Biol. Med. Model., 2, 23.
-
(2005)
Theor. Biol. Med. Model
, vol.2
, pp. 23
-
-
Boulesteix, A.L.1
Strimmer, K.2
-
6
-
-
0035590060
-
An overview of analytic rotation in exploratory factor analysis
-
Browne,M. (2001) An overview of analytic rotation in exploratory factor analysis. Multivariate Behav. Res., 36, 111-150.
-
(2001)
Multivariate Behav. Res
, vol.36
, pp. 111-150
-
-
Browne, M.1
-
7
-
-
33845365903
-
A Gibbs sampler for the identification of gene expression and network connectivity consistency
-
Brynildsen,M.P. et al. (2006) A Gibbs sampler for the identification of gene expression and network connectivity consistency. Bioinformatics, 22, 3040-3046.
-
(2006)
Bioinformatics
, vol.22
, pp. 3040-3046
-
-
Brynildsen, M.P.1
-
8
-
-
33749517854
-
Versatility and connectivity efficiency of bipartite transcription networks
-
Brynildsen,M.P. et al. (2006) Versatility and connectivity efficiency of bipartite transcription networks. Biophys. J., 91 2749-2759.
-
(2006)
Biophys. J
, vol.91
, pp. 2749-2759
-
-
Brynildsen, M.P.1
-
9
-
-
0035135420
-
Regulatory element detection using correlation with expression
-
Bussemaker,H. J. et al. (2001) Regulatory element detection using correlation with expression. Nat. Genet., 27, 167-171.
-
(2001)
Nat. Genet
, vol.27
, pp. 167-171
-
-
Bussemaker, H.J.1
-
10
-
-
0842288337
-
Inferring cellular networks using probabilistic graphical models
-
Friedman,N. (2004) Inferring cellular networks using probabilistic graphical models. Science, 303, 799-805.
-
(2004)
Science
, vol.303
, pp. 799-805
-
-
Friedman, N.1
-
11
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
Friedman,N. et al. (2000) Using Bayesian networks to analyze expression data. J. Comput. Biol., 7, 601-620.
-
(2000)
J. Comput. Biol
, vol.7
, pp. 601-620
-
-
Friedman, N.1
-
12
-
-
33747841966
-
Transcriptome network component analysis with limited microarray data
-
Galbraith,S.J. et al. (2006) Transcriptome network component analysis with limited microarray data. Bioinformatics, 22, 1886-1894.
-
(2006)
Bioinformatics
, vol.22
, pp. 1886-1894
-
-
Galbraith, S.J.1
-
13
-
-
2942582468
-
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
-
Gao,F. et al. (2004) Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data. BMC Bioinformatics, 5, 31.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 31
-
-
Gao, F.1
-
14
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison,C.T. et al. (2004) Transcriptional regulatory code of a eukaryotic genome. Nature, 431, 99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
-
15
-
-
0034682504
-
Fundamental patterns underlying gene expression profiles: Simplicity from complexity
-
Holter,N.S. et al. (2000) Fundamental patterns underlying gene expression profiles: Simplicity from complexity. Proc. Natl Acad. Sci. USA, 97, 8409-8414.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 8409-8414
-
-
Holter, N.S.1
-
16
-
-
1542473171
-
Application of independent component analysis to microarrays
-
Lee,S.I. and Batzoglou,S. (2003) Application of independent component analysis to microarrays. Genome Biol., 4, 76.
-
(2003)
Genome Biol
, vol.4
, pp. 76
-
-
Lee, S.I.1
Batzoglou, S.2
-
17
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee,T.I. et al. (2002) Transcriptional regulatory networks in Saccharomyces cerevisiae. Science, 298, 799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
-
18
-
-
33645108505
-
Using a state-space model with hidden variables to infer transcription factor activities
-
Li,Z. et al. (2006) Using a state-space model with hidden variables to infer transcription factor activities. Bioinformatics 22, 747-754.
-
(2006)
Bioinformatics
, vol.22
, pp. 747-754
-
-
Li, Z.1
-
19
-
-
0345824737
-
Network component analysis: Reconstruction of regulatory signals in biological system
-
Liao,J.C. et al. (2003) Network component analysis: Reconstruction of regulatory signals in biological system. Proc. Natl Acad. Sci. USA 100, 15522-15527.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 15522-15527
-
-
Liao, J.C.1
-
20
-
-
0036166753
-
Linear modes of gene expression determined by independent component analysis
-
Liebermeister,W. (2002) Linear modes of gene expression determined by independent component analysis. Bioinformatics, 18, 51-60.
-
(2002)
Bioinformatics
, vol.18
, pp. 51-60
-
-
Liebermeister, W.1
-
21
-
-
14844342814
-
Genome-wide analysis of the context-dependence of regulatory networks
-
Papp,B. and Oliver,S. (2005) Genome-wide analysis of the context-dependence of regulatory networks. Genome Biol., 6, 206.
-
(2005)
Genome Biol
, vol.6
, pp. 206
-
-
Papp, B.1
Oliver, S.2
-
22
-
-
11244318119
-
Minreg: Inferring an active regulator set
-
Pe'er,D. et al. (2002) Minreg: Inferring an active regulator set. Bioinformatics, 18 (Suppl. 1), S258-S267.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Pe'er, D.1
-
23
-
-
0142179209
-
Prediction of regulatory networks: Genome-wide identification of transcription factor targets from gene expression data
-
Qian,J. et al. (2003) Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data. Bioinformatics, 19, 1917-1926.
-
(2003)
Bioinformatics
, vol.19
, pp. 1917-1926
-
-
Qian, J.1
-
24
-
-
33645107349
-
Bayesian sparse hidden components analysis for transcription regulation networks
-
Sabatti,C. and James,G.M. (2006) Bayesian sparse hidden components analysis for transcription regulation networks. Bioinformatics, 22, 739-746.
-
(2006)
Bioinformatics
, vol.22
, pp. 739-746
-
-
Sabatti, C.1
James, G.M.2
-
25
-
-
33751008680
-
Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities
-
Sanguinetti,G. et al. (2006) Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities. Bioinformatics, 22, 2775-2781.
-
(2006)
Bioinformatics
, vol.22
, pp. 2775-2781
-
-
Sanguinetti, G.1
-
26
-
-
0037941585
-
Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
-
Segal,E. et al. (2003) Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data. Nat. Genet., 34, 166-176.
-
(2003)
Nat. Genet
, vol.34
, pp. 166-176
-
-
Segal, E.1
-
28
-
-
15244338624
-
gNCA: A framework for determining transcription factor activity based on transcriptome: Identifiability and numerical unplementation
-
Tran,L. M. et al. (2005) gNCA: A framework for determining transcription factor activity based on transcriptome: Identifiability and numerical unplementation. Metab. Eng., 7, 128-141.
-
(2005)
Metab. Eng
, vol.7
, pp. 128-141
-
-
Tran, L.M.1
-
29
-
-
2442691914
-
-
Wu,F. X. et al. (2004) Modeling gene expression from microarray expression data with state-space equations. Pac. Symp. Biocomput., 007, 581-592.
-
Wu,F. X. et al. (2004) Modeling gene expression from microarray expression data with state-space equations. Pac. Symp. Biocomput., 007, 581-592.
-
-
-
-
30
-
-
24044458903
-
Determination of functional interactions among signalling pathways in Escherichia coli K-12
-
Yang,Y.L. and Liao,J.C. (2005) Determination of functional interactions among signalling pathways in Escherichia coli K-12. Metab. Eng., 7, 280-290.
-
(2005)
Metab. Eng
, vol.7
, pp. 280-290
-
-
Yang, Y.L.1
Liao, J.C.2
-
31
-
-
23744502897
-
Inferring yeah cell cycle regulators and interactions using transcription factor activities
-
Yang,Y.L. et al. (2005) Inferring yeah cell cycle regulators and interactions using transcription factor activities. BMC Genomics., 6, 90.
-
(2005)
BMC Genomics
, vol.6
, pp. 90
-
-
Yang, Y.L.1
-
32
-
-
0037197936
-
Reverse engineering gene networks using singular value decomposition and robust regression
-
Yeung,M.K. et al. (2002) Reverse engineering gene networks using singular value decomposition and robust regression. Proc. Natl Acad. Sci. USA, 99, 6163-6168.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 6163-6168
-
-
Yeung, M.K.1
|