Protein folding in a force clamp

Journal of Chemical Physics

Volumn 124, Issue 19, 2006, Pages

  Cieplak, Marek ^a   Szymczak, P ^b  

^a INSTITUTE OF PHYSICS   (Poland)

^b UNIVERSITY OF WARSAW   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

MOLECULAR DYNAMICS; MOLECULAR STRUCTURE; TOPOLOGY;

FORCE CLAMP; PROTEIN FOLDING; TOPOLOGY-BASED DYNAMICAL MODEL; UNCONSTRAINED FOLDING;

PROTEINS;

UBIQUITIN;

ARTICLE; COMPARATIVE STUDY; PROTEIN FOLDING;

PROTEIN FOLDING; UBIQUITIN;

EID: 34547854222     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.2192768     Document Type: Article

References (30)

1. A. F. Oberhauser, P. K. Hansma, M. Carrion-Vazquez, and J. M. Fernandez, Proc. Natl. Acad. Sci. U.S.A. 98, 468 (2001).
2. J. M. Fernandez and H. Li, Science 303, 1674 (2004).
3. H. Abe and N. Go, Biopolymers 0006-3525 10.1002/bip.1981.360200512 20, 1013 (1981); S. Takada, Proc. Natl. Acad. Sci. U.S.A. 96, 11698 (1999).
4. H. Abe and N. Go, Biopolymers 0006-3525 10.1002/bip.1981.360200512 20, 1013 (1981); S. Takada, Proc. Natl. Acad. Sci. U.S.A. 96, 11698 (1999).
5. M. Schlierf, H. Li, and J. M. Fernandez, Proc. Natl. Acad. Sci. U.S.A. 101, 7299 (2004).
6. H. M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, and P. E. Bourne, Nucleic Acids Res. 28, 235 (2000).
7. T. X. Hoang and M. Cieplak, J. Chem. Phys. 0021-9606 10.1063/1.1314868 113, 8319 (2000); M. Cieplak and T. X. Hoang, Biophys. J. 0006-3495 84, 475 (2003); M. Cieplak, T. X. Hoang, and M. O. Robbins, Proteins: Struct., Funct., Bioinf. 56, 285 (2004).
8. T. X. Hoang and M. Cieplak, J. Chem. Phys. 0021-9606 10.1063/1.1314868 113, 8319 (2000); M. Cieplak and T. X. Hoang, Biophys. J. 0006-3495 84, 475 (2003); M. Cieplak, T. X. Hoang, and M. O. Robbins, Proteins: Struct., Funct., Bioinf. 56, 285 (2004).
9. T. X. Hoang and M. Cieplak, J. Chem. Phys. 0021-9606 10.1063/1.1314868 113, 8319 (2000); M. Cieplak and T. X. Hoang, Biophys. J. 0006-3495 84, 475 (2003); M. Cieplak, T. X. Hoang, and M. O. Robbins, Proteins: Struct., Funct., Bioinf. 56, 285 (2004).
10. J. Tsai, R. Taylor, C. Chothia, and M. Gerstein, J. Mol. Biol. 290, 253 (1999).
11. M. Cieplak, A. Pastore, and T. X. Hoang, J. Chem. Phys. 0021-9606 10.1063/1.1839572 122, 054906 (2004); M. Cieplak and P. E. Marszalek, J. Chem. Phys. 123, 194903 (2005).
12. M. Cieplak, A. Pastore, and T. X. Hoang, J. Chem. Phys. 0021-9606 10.1063/1.1839572 122, 054906 (2004); M. Cieplak and P. E. Marszalek, J. Chem. Phys. 123, 194903 (2005).
13. P. C. Li and D. E. Makarov, J. Chem. Phys. 121, 4826 (2004).
14. P. Szymczak and M. Cieplak, J. Phys.: Condens. Matter 18, L21 (2006).
15. M. Smoluchowski, Z. Phys. Chem. 0942-9352 92, 129 (1917); H.-X. Zhou, J. Mol. Recognit. 17, 368 (2004).
16. M. Smoluchowski, Z. Phys. Chem. 0942-9352 92, 129 (1917); H.-X. Zhou, J. Mol. Recognit. 17, 368 (2004).
17. M. Karplus and D. L. Weaver, Nature (London) 260, 404 (1976).
18. T. X. Hoang and M. Cieplak, J. Chem. Phys. 112, 6851 (2000).
19. B. A. Krantz and T. R. Sosnick, Biochemistry 39, 11696 (2000).
20. T. R. Sosnick, Science 306, 411 (2004).
21. Y. Zhou, C. Zhang, G. Stell, and J. Wang, J. Am. Chem. Soc. 125, 6300 (2003).
22. C.-L. Lee, C.-T. Lin, G. Stell, and J. Wang, Phys. Rev. E 67, 041905 (2003).
23. M. Skorobogatiy, H. Guo, and M. Zuckermann, J. Chem. Phys. 109, 2528 (1998).
24. T. Veitshans, D. Klimov, and D. Thirumalai, Folding Des. 2, 1 (1997).
25. C. Clementi, H. Nymeyer, and J. N. Onuchic, J. Mol. Biol. 298, 937 (2000).
26. J. Zhang, M. Qin, and W. Wang, Proteins: Struct., Funct., Bioinf. 59, 565 (2005).
27. M. S. Li, C.-K. Hu, D. Klimov, and D. Thirumalai, Proc. Natl. Acad. Sci. U.S.A. 100, 93 (2006).
28. M. Cieplak and T. X. Hoang, Physica A 330, 195 (2003).
29. M. Cieplak, Phys. Rev. E 69, 031907 (2004).
30. R. B. Best and G. Hummer, Science 308, 498B (2005).