Characterization of human malaria parasite Plasmodium falciparum eIF4E homologue and mRNA 5′ cap status

Molecular and Biochemical Parasitology

Volumn 155, Issue 2, 2007, Pages 146-155

  Shaw, Philip J ^a   Ponmee, Napawan ^a   Karoonuthaisiri, Nitsara ^a   Kamchonwongpaisan, Sumalee ^a   Yuthavong, Yongyuth ^a  

^a NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

Author keywords

5 cap; eIF4E; Malaria; Microarray; mRNA

Indexed keywords

INITIATION FACTOR 4E; MESSENGER RNA; RNA;

ARTICLE; CONTROLLED STUDY; MICROARRAY ANALYSIS; NONHUMAN; PLASMODIUM FALCIPARUM; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN INTERACTION; RNA CAPPING;

ANIMALS; EUKARYOTIC INITIATION FACTOR-4E; HUMANS; MICROARRAY ANALYSIS; PLASMODIUM FALCIPARUM; PROTEIN BINDING; PROTOZOAN PROTEINS; RECOMBINANT PROTEINS; RNA CAPS; RNA, MESSENGER; RNA, PROTOZOAN;

EUKARYOTA; PLASMODIUM FALCIPARUM;

EID: 34547838194     PISSN: 01666851     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molbiopara.2007.07.003     Document Type: Article

References (36)

1. Preiss T., and Hentze M.W. Starting the protein synthesis machine: eukaryotic translation initiation. Bioessays 25 12 (2003) 1201-1211
2. Gu M., and Lima C.D. Processing the message: structural insights into capping and decapping mRNA. Curr Opin Struct Biol 15 1 (2005) 99-106
3. Marcotrigiano J., Gingras A.C., Sonenberg N., and Burley S.K. Cocrystal structure of the messenger RNA 5′ cap-binding protein (eIF4E) bound to 7-methyl-GDP. Cell 89 6 (1997) 951-961
4. Joshi B., Lee K., Maeder D.L., and Jagus R. Phylogenetic analysis of eIF4E-family members. BMC Evol Biol 5 (2005) 48
5. Yoffe Y., Zuberek J., Lewdorowicz M., et al. Cap-binding activity of an eIF4E homolog from Leishmania. Rna 10 11 (2004) 1764-1775
6. Dhalia R., Reis C.R., Freire E.R., Rocha P.O., Katz R., Muniz J.R., Standart N., and de Melo Neto O.P. Translation initiation in Leishmania major: characterisation of multiple eIF4F subunit homologues. Mol Biochem Parasitol 140 1 (2005) 23-41
7. Li L., and Wang C.C. Identification in the ancient protist Giardia lamblia of two eukaryotic translation initiation factor 4E homologues with distinctive functions. Eukaryot Cell 4 5 (2005) 948-959
8. Richter J.D., and Sonenberg N. Regulation of cap-dependent translation by eIF4E inhibitory proteins. Nature 433 7025 (2005) 477-480
9. Fillman C., and Lykke-Andersen J. RNA decapping inside and outside of processing bodies. Curr Opin Cell Biol 17 3 (2005) 326-331
10. Ho C.K., and Shuman S. A yeast-like mRNA capping apparatus in Plasmodium falciparum. Proc Natl Acad Sci USA 98 6 (2001) 3050-3055
11. Watanabe J., Sasaki M., Suzuki Y., and Sugano S. Analysis of transcriptomes of human malaria parasite Plasmodium falciparum using full-length enriched library: identification of novel genes and diverse transcription start sites of messenger RNAs. Gene 291 1/2 (2002) 105-113
12. Milligan J.F., Groebe D.R., Witherell G.W., and Uhlenbeck O.C. Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res 15 21 (1987) 8783-8798
13. Trager W., and Jensen J.B. Human malaria parasites in continuous culture. Science 193 4254 (1976) 673-675
14. Kamchonwongpaisan S., Quarrell R., Charoensetakul N., et al. Inhibitors of multiple mutants of Plasmodium falciparum dihydrofolate reductase and their antimalarial activities. J Med Chem 47 3 (2004) 673-680
15. Tusher V.G., Tibshirani R., and Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 98 9 (2001) 5116-5121
16. Moteki S., and Price D. Functional coupling of capping and transcription of mRNA. Mol Cell 10 3 (2002) 599-609
17. Webb N.R., Chari R.V., DePillis G., Kozarich J.W., and Rhoads R.E. Purification of the messenger RNA cap-binding protein using a new affinity medium. Biochemistry 23 2 (1984) 177-181
18. Moormann A.M., Hossler P.A., and Meshnick S.R. Deferoxamine effects on Plasmodium falciparum gene expression. Mol Biochem Parasitol 98 2 (1999) 279-283
19. Myrick A., Munasinghe A., Patankar S., and Wirth D.F. Mapping of the Plasmodium falciparum multidrug resistance gene 5′-upstream region, and evidence of induction of transcript levels by antimalarial drugs in chloroquine sensitive parasites. Mol Microbiol 49 3 (2003) 671-683
20. Hsu P.C., Hodel M.R., Thomas J.W., Taylor L.J., Hagedorn C.H., and Hodel A.E. Structural requirements for the specific recognition of an m7G mRNA cap. Biochemistry 39 45 (2000) 13730-13736
21. Edery I., Chu L.L., Sonenberg N., and Pelletier J. An efficient strategy to isolate full-length cDNAs based on an mRNA cap retention procedure (CAPture). Mol Cell Biol 15 6 (1995) 3363-3371
22. Choi Y.H., and Hagedorn C.H. Purifying mRNAs with a high-affinity eIF4E mutant identifies the short 3′ poly(A) end phenotype. Proc Natl Acad Sci USA 100 12 (2003) 7033-7038
23. Carninci P., Westover A., Nishiyama Y., et al. High efficiency selection of full-length cDNA by improved biotinylated cap trapper. DNA Res 4 1 (1997) 61-66
24. Das M., Harvey I., Chu L.L., Sinha M., and Pelletier J. Full-length cDNAs: more than just reaching the ends. Physiol Genomics 6 2 (2001) 57-80
25. Brengues M., Teixeira D., and Parker R. Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies. Science 310 5747 (2005) 486-489
26. Duraisingh M.T., and Cowman A.F. Contribution of the pfmdr1 gene to antimalarial drug-resistance. Acta Trop 94 3 (2005) 181-190
27. Eckstein-Ludwig U., Webb R.J., Van Goethem I.D., et al. Artemisinins target the SERCA of Plasmodium falciparum. Nature 424 6951 (2003) 957-961
28. Llinas M., Bozdech Z., Wong E.D., Adai A.T., and DeRisi J.L. Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains. Nucleic Acids Res 34 4 (2006) 1166-1173
29. Bozdech Z., and Ginsburg H. Antioxidant defense in Plasmodium falciparum-data mining of the transcriptome. Malar J 3 (2004) 23
30. Meijer H.A., and Thomas A.A. Control of eukaryotic protein synthesis by upstream open reading frames in the 5′-untranslated region of an mRNA. Biochem J 367 Pt 1 (2002) 1-11
31. Shenton D., Smirnova J.B., Selley J.N., et al. Global translational responses to oxidative stress impact upon multiple levels of protein synthesis. J Biol Chem 281 39 (2006) 29011-29021
32. Spriggs K.A., Bushell M., Mitchell S.A., and Willis A.E. Internal ribosome entry segment-mediated translation during apoptosis: the role of IRES-trans-acting factors. Cell Death Differ 12 6 (2005) 585-591
33. Mair G.R., Braks J.A., Garver L.S., et al. Regulation of sexual development of Plasmodium by translational repression. Science 313 5787 (2006) 667-669
34. Coller J.M., Tucker M., Sheth U., Valencia-Sanchez M.A., and Parker R. The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes. Rna 7 12 (2001) 1717-1727
35. Hall N., Karras M., Raine J.D., et al. A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses. Science 307 5706 (2005) 82-86
36. Khan S.M., Franke-Fayard B., Mair G.R., et al. Proteome analysis of separated male and female gametocytes reveals novel sex-specific Plasmodium biology. Cell 121 5 (2005) 675-687