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Volumn 260, Issue 1-2, 2007, Pages 114-123

In silico functional and structural characterisation of ferlin proteins by mapping disease-causing mutations and evolutionary information onto three-dimensional models of their C2 domains

Author keywords

C2 domain; Dysferlin; Evolutionary analysis; Muscular dystrophy; Otoferlin; Structural modelling

Indexed keywords

DYSFERLIN; FERLIN; PROTEIN DERIVATIVE; UNCLASSIFIED DRUG;

EID: 34547792309     PISSN: 0022510X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jns.2007.04.016     Document Type: Article
Times cited : (31)

References (35)
  • 2
    • 0042427273 scopus 로고    scopus 로고
    • Repairing the tears: dysferlin in muscle membrane repair
    • Doherty K.R., and McNally E.M. Repairing the tears: dysferlin in muscle membrane repair. Trends Mol Med 9 8 (2003) 327-330
    • (2003) Trends Mol Med , vol.9 , Issue.8 , pp. 327-330
    • Doherty, K.R.1    McNally, E.M.2
  • 3
    • 0035215432 scopus 로고    scopus 로고
    • Novel protein domains and repeats in Drosophila melanogaster: insights into structure, function, and evolution
    • Ponting C.P., Mott R., Bork P., and Copley R.R. Novel protein domains and repeats in Drosophila melanogaster: insights into structure, function, and evolution. Genome Res 11 12 (2001) 1996-2008
    • (2001) Genome Res , vol.11 , Issue.12 , pp. 1996-2008
    • Ponting, C.P.1    Mott, R.2    Bork, P.3    Copley, R.R.4
  • 4
    • 0030972880 scopus 로고    scopus 로고
    • A nematode gene required for sperm vesicle fusion
    • Achanzar W.E., and Ward S. A nematode gene required for sperm vesicle fusion. J Cell Sci 110 Pt 9 (1997) 1073-1081
    • (1997) J Cell Sci , vol.110 , Issue.PART 9 , pp. 1073-1081
    • Achanzar, W.E.1    Ward, S.2
  • 5
    • 0030467967 scopus 로고    scopus 로고
    • The C2 domain calcium-binding motif: structural and functional diversity
    • Nalefski E.A., and Falke J.J. The C2 domain calcium-binding motif: structural and functional diversity. Protein Sci 5 12 (1996) 2375-2390
    • (1996) Protein Sci , vol.5 , Issue.12 , pp. 2375-2390
    • Nalefski, E.A.1    Falke, J.J.2
  • 6
    • 0030034251 scopus 로고    scopus 로고
    • Extending the C2 domain family: C2s in PKCs delta, epsilon, eta, theta, phospholipases, GAPs, and perforin
    • Ponting C.P., and Parker P.J. Extending the C2 domain family: C2s in PKCs delta, epsilon, eta, theta, phospholipases, GAPs, and perforin. Protein Sci 5 1 (1996) 162-166
    • (1996) Protein Sci , vol.5 , Issue.1 , pp. 162-166
    • Ponting, C.P.1    Parker, P.J.2
  • 7
    • 0032568662 scopus 로고    scopus 로고
    • C2-domains, structure and function of a universal Ca2+-binding domain
    • Rizo J., and Sudhof T.C. C2-domains, structure and function of a universal Ca2+-binding domain. J Biol Chem 273 26 (1998) 15879-15882
    • (1998) J Biol Chem , vol.273 , Issue.26 , pp. 15879-15882
    • Rizo, J.1    Sudhof, T.C.2
  • 8
    • 0141750583 scopus 로고    scopus 로고
    • Functional recycling of C2 domains throughout evolution: a comparative study of synaptotagmin, protein kinase C and phospholipase C by sequence, structural and modelling approaches
    • Jimenez J.L., Smith G.R., Contreras-Moreira B., Sgouros J.G., Meunier F.A., Bates P.A., et al. Functional recycling of C2 domains throughout evolution: a comparative study of synaptotagmin, protein kinase C and phospholipase C by sequence, structural and modelling approaches. J Mol Biol 333 3 (2003) 621-639
    • (2003) J Mol Biol , vol.333 , Issue.3 , pp. 621-639
    • Jimenez, J.L.1    Smith, G.R.2    Contreras-Moreira, B.3    Sgouros, J.G.4    Meunier, F.A.5    Bates, P.A.6
  • 9
    • 0032577067 scopus 로고    scopus 로고
    • Direct interaction of a Ca2+-binding loop of synaptotagmin with lipid bilayers
    • Chapman E.R., and Davis A.F. Direct interaction of a Ca2+-binding loop of synaptotagmin with lipid bilayers. J Biol Chem 273 22 (1998) 13995-14001
    • (1998) J Biol Chem , vol.273 , Issue.22 , pp. 13995-14001
    • Chapman, E.R.1    Davis, A.F.2
  • 10
    • 0037738510 scopus 로고    scopus 로고
    • Defective membrane repair in dysferlin-deficient muscular dystrophy
    • Bansal D., Miyake K., Vogel S.S., Groh S., Chen C.C., Williamson R., et al. Defective membrane repair in dysferlin-deficient muscular dystrophy. Nature 423 6936 (2003) 168-172
    • (2003) Nature , vol.423 , Issue.6936 , pp. 168-172
    • Bansal, D.1    Miyake, K.2    Vogel, S.S.3    Groh, S.4    Chen, C.C.5    Williamson, R.6
  • 11
    • 1842556210 scopus 로고    scopus 로고
    • Dysferlin and the plasma membrane repair in muscular dystrophy
    • Bansal D., and Campbell K.P. Dysferlin and the plasma membrane repair in muscular dystrophy. Trends Cell Biol 14 4 (2004) 206-213
    • (2004) Trends Cell Biol , vol.14 , Issue.4 , pp. 206-213
    • Bansal, D.1    Campbell, K.P.2
  • 12
    • 3142717832 scopus 로고    scopus 로고
    • Limb-girdle muscular dystrophies-from genetics to molecular pathology
    • Laval S.H., and Bushby K.M. Limb-girdle muscular dystrophies-from genetics to molecular pathology. Neuropathol Appl Neurobiol 30 2 (2004) 91-105
    • (2004) Neuropathol Appl Neurobiol , vol.30 , Issue.2 , pp. 91-105
    • Laval, S.H.1    Bushby, K.M.2
  • 14
    • 0035958557 scopus 로고    scopus 로고
    • Plasma membrane repair is mediated by Ca(2+)-regulated exocytosis of lysosomes
    • Reddy A., Caler E.V., and Andrews N.W. Plasma membrane repair is mediated by Ca(2+)-regulated exocytosis of lysosomes. Cell 106 2 (2001) 157-169
    • (2001) Cell , vol.106 , Issue.2 , pp. 157-169
    • Reddy, A.1    Caler, E.V.2    Andrews, N.W.3
  • 15
    • 0037151075 scopus 로고    scopus 로고
    • Calcium-sensitive phospholipid binding properties of normal and mutant ferlin C2 domains
    • Davis D.B., Doherty K.R., Delmonte A.J., and McNally E.M. Calcium-sensitive phospholipid binding properties of normal and mutant ferlin C2 domains. J Biol Chem 277 25 (2002) 22883-22888
    • (2002) J Biol Chem , vol.277 , Issue.25 , pp. 22883-22888
    • Davis, D.B.1    Doherty, K.R.2    Delmonte, A.J.3    McNally, E.M.4
  • 16
    • 33749994043 scopus 로고    scopus 로고
    • Otoferlin, defective in a human deafness form, is essential for exocytosis at the auditory ribbon synapse
    • Roux I., Safieddine S., Nouvian R., Grati M., Simmler M.C., Bahloul A., et al. Otoferlin, defective in a human deafness form, is essential for exocytosis at the auditory ribbon synapse. Cell 127 2 (2006) 277-289
    • (2006) Cell , vol.127 , Issue.2 , pp. 277-289
    • Roux, I.1    Safieddine, S.2    Nouvian, R.3    Grati, M.4    Simmler, M.C.5    Bahloul, A.6
  • 17
    • 33746054560 scopus 로고    scopus 로고
    • FER-1 regulates Ca2+-mediated membrane fusion during C. elegans spermatogenesis
    • Washington N.L., and Ward S. FER-1 regulates Ca2+-mediated membrane fusion during C. elegans spermatogenesis. J Cell Sci 119 Pt 12 (2006) 2552-2562
    • (2006) J Cell Sci , vol.119 , Issue.PART 12 , pp. 2552-2562
    • Washington, N.L.1    Ward, S.2
  • 18
    • 33750502406 scopus 로고    scopus 로고
    • Mutation impact on dysferlin inferred from database analysis and computer-based structural predictions
    • Therrien C., Dodig D., Karpati G., and Sinnreich M. Mutation impact on dysferlin inferred from database analysis and computer-based structural predictions. J Neurol Sci 250 1-2 (2006) 71-78
    • (2006) J Neurol Sci , vol.250 , Issue.1 -2 , pp. 71-78
    • Therrien, C.1    Dodig, D.2    Karpati, G.3    Sinnreich, M.4
  • 20
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 17 (1997) 3389-3402
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6
  • 21
    • 0033990087 scopus 로고    scopus 로고
    • The use of CLUSTAL W and CLUSTAL X for multiple sequence alignment
    • Aiyar A. The use of CLUSTAL W and CLUSTAL X for multiple sequence alignment. Methods Mol Biol 132 (2000) 221-241
    • (2000) Methods Mol Biol , vol.132 , pp. 221-241
    • Aiyar, A.1
  • 22
    • 0030933176 scopus 로고    scopus 로고
    • A ternary metal binding site in the C2 domain of phosphoinositide-specific phospholipase C-delta1
    • Essen L.O., Perisic O., Lynch D.E., Katan M., and Williams R.L. A ternary metal binding site in the C2 domain of phosphoinositide-specific phospholipase C-delta1. Biochemistry 36 10 (1997) 2753-2762
    • (1997) Biochemistry , vol.36 , Issue.10 , pp. 2753-2762
    • Essen, L.O.1    Perisic, O.2    Lynch, D.E.3    Katan, M.4    Williams, R.L.5
  • 23
    • 0042622380 scopus 로고    scopus 로고
    • SWISS-MODEL: an automated protein homology-modeling server
    • Schwede T., Kopp J., Guex N., and Peitsch M.C. SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res 31 13 (2003) 3381-3385
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3381-3385
    • Schwede, T.1    Kopp, J.2    Guex, N.3    Peitsch, M.C.4
  • 24
    • 18844434719 scopus 로고    scopus 로고
    • Does structural and chemical divergence play a role in precluding undesirable protein interactions?
    • Jimenez J.L. Does structural and chemical divergence play a role in precluding undesirable protein interactions?. Proteins 59 4 (2005) 757-764
    • (2005) Proteins , vol.59 , Issue.4 , pp. 757-764
    • Jimenez, J.L.1
  • 25
    • 0035853280 scopus 로고    scopus 로고
    • Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins
    • Landgraf R., Xenarios I., and Eisenberg D. Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins. J Mol Biol 307 5 (2001) 1487-1502
    • (2001) J Mol Biol , vol.307 , Issue.5 , pp. 1487-1502
    • Landgraf, R.1    Xenarios, I.2    Eisenberg, D.3
  • 26
    • 0036161583 scopus 로고    scopus 로고
    • Electrostatic control of the membrane targeting of C2 domains
    • Murray D., and Honig B. Electrostatic control of the membrane targeting of C2 domains. Mol Cell 9 1 (2002) 145-154
    • (2002) Mol Cell , vol.9 , Issue.1 , pp. 145-154
    • Murray, D.1    Honig, B.2
  • 27
    • 0032951128 scopus 로고    scopus 로고
    • Calcium-dependent oligomerization of synaptotagmins I and II. Synaptotagmins I and II are localized on the same synaptic vesicle and heterodimerize in the presence of calcium
    • Osborne S.L., Herreros J., Bastiaens P.I., and Schiavo G. Calcium-dependent oligomerization of synaptotagmins I and II. Synaptotagmins I and II are localized on the same synaptic vesicle and heterodimerize in the presence of calcium. J Biol Chem 274 1 (1999) 59-66
    • (1999) J Biol Chem , vol.274 , Issue.1 , pp. 59-66
    • Osborne, S.L.1    Herreros, J.2    Bastiaens, P.I.3    Schiavo, G.4
  • 28
    • 0346493036 scopus 로고    scopus 로고
    • Role of the lysine-rich cluster of the C2 domain in the phosphatidylserine-dependent activation of PKCalpha
    • Rodriguez-Alfaro J.A., Gomez-Fernandez J.C., and Corbalan-Garcia S. Role of the lysine-rich cluster of the C2 domain in the phosphatidylserine-dependent activation of PKCalpha. J Mol Biol 335 4 (2004) 1117-1129
    • (2004) J Mol Biol , vol.335 , Issue.4 , pp. 1117-1129
    • Rodriguez-Alfaro, J.A.1    Gomez-Fernandez, J.C.2    Corbalan-Garcia, S.3
  • 29
    • 0036073381 scopus 로고    scopus 로고
    • Substitutions in the conserved C2C domain of otoferlin cause DFNB9, a form of nonsyndromic autosomal recessive deafness
    • Mirghomizadeh F., Pfister M., Apaydin F., Petit C., Kupka S., Pusch C.M., et al. Substitutions in the conserved C2C domain of otoferlin cause DFNB9, a form of nonsyndromic autosomal recessive deafness. Neurobiol Dis 10 2 (2002) 157-164
    • (2002) Neurobiol Dis , vol.10 , Issue.2 , pp. 157-164
    • Mirghomizadeh, F.1    Pfister, M.2    Apaydin, F.3    Petit, C.4    Kupka, S.5    Pusch, C.M.6
  • 30
    • 5344257565 scopus 로고    scopus 로고
    • Phenotypic features and genetic findings in 2 chinese families with Miyoshi distal myopathy
    • Ro L.S., Lee-Chen G.J., Lin T.C., Wu Y.R., Chen C.M., Lin C.Y., et al. Phenotypic features and genetic findings in 2 chinese families with Miyoshi distal myopathy. Arch Neurol 61 10 (2004) 1594-1599
    • (2004) Arch Neurol , vol.61 , Issue.10 , pp. 1594-1599
    • Ro, L.S.1    Lee-Chen, G.J.2    Lin, T.C.3    Wu, Y.R.4    Chen, C.M.5    Lin, C.Y.6
  • 31
    • 0033846745 scopus 로고    scopus 로고
    • OTOF encodes multiple long and short isoforms: genetic evidence that the long ones underlie recessive deafness DFNB9
    • Yasunaga S., Grati M., Chardenoux S., Smith T.N., Friedman T.B., Lalwani A.K., et al. OTOF encodes multiple long and short isoforms: genetic evidence that the long ones underlie recessive deafness DFNB9. Am J Hum Genet 67 3 (2000) 591-600
    • (2000) Am J Hum Genet , vol.67 , Issue.3 , pp. 591-600
    • Yasunaga, S.1    Grati, M.2    Chardenoux, S.3    Smith, T.N.4    Friedman, T.B.5    Lalwani, A.K.6
  • 32
    • 0032947634 scopus 로고    scopus 로고
    • A mutation in OTOF, encoding otoferlin, a FER-1-like protein, causes DFNB9, a nonsyndromic form of deafness
    • Yasunaga S., Grati M., Cohen-Salmon M., El-Amraoui A., Mustapha M., Salem N., et al. A mutation in OTOF, encoding otoferlin, a FER-1-like protein, causes DFNB9, a nonsyndromic form of deafness. Nat Genet 21 4 (1999) 363-369
    • (1999) Nat Genet , vol.21 , Issue.4 , pp. 363-369
    • Yasunaga, S.1    Grati, M.2    Cohen-Salmon, M.3    El-Amraoui, A.4    Mustapha, M.5    Salem, N.6
  • 33
    • 0029924329 scopus 로고    scopus 로고
    • Crystal structure of a mammalian phosphoinositide-specific phospholipase C delta
    • Essen L.O., Perisic O., Cheung R., Katan M., and Williams R.L. Crystal structure of a mammalian phosphoinositide-specific phospholipase C delta. Nature 380 6575 (1996) 595-602
    • (1996) Nature , vol.380 , Issue.6575 , pp. 595-602
    • Essen, L.O.1    Perisic, O.2    Cheung, R.3    Katan, M.4    Williams, R.L.5
  • 35
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling
    • Guex N., and Peitsch M.C. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18 15 (1997) 2714-2723
    • (1997) Electrophoresis , vol.18 , Issue.15 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2


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