-
1
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides, T. Chromatin modifications and their function. Cell 128, 693-705 (2007).
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
2
-
-
0037188911
-
Histone methylation: Dynamic or static?
-
Bannister, A.J., Schneider, R. & Kouzarides, T. Histone methylation: dynamic or static? Cell 109, 801-806 (2002).
-
(2002)
Cell
, vol.109
, pp. 801-806
-
-
Bannister, A.J.1
Schneider, R.2
Kouzarides, T.3
-
3
-
-
33846025127
-
Dynamic regulation of histone lysine methylation by demethylases
-
Shi, Y. & Whetstine, J.R. Dynamic regulation of histone lysine methylation by demethylases. Mol. Cell 25, 1-14 (2007).
-
(2007)
Mol. Cell
, vol.25
, pp. 1-14
-
-
Shi, Y.1
Whetstine, J.R.2
-
4
-
-
11144332565
-
Histone demethylation mediated by the nuclear amine oxidase homolog LSD1
-
Shi, Y. et al. Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119, 941-953 (2004).
-
(2004)
Cell
, vol.119
, pp. 941-953
-
-
Shi, Y.1
-
5
-
-
24144462170
-
LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription
-
Metzger, E. et al. LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription. Nature 437, 436-439 (2005).
-
(2005)
Nature
, vol.437
, pp. 436-439
-
-
Metzger, E.1
-
6
-
-
32844454603
-
Histone demethylation by a family of JmjC domain-containing proteins
-
Tsukada, Y. et al. Histone demethylation by a family of JmjC domain-containing proteins. Nature 439, 811-816 (2006).
-
(2006)
Nature
, vol.439
, pp. 811-816
-
-
Tsukada, Y.1
-
7
-
-
33645891676
-
Structural studies on 2-oxoglutarate oxygenases and related double-stranded beta-helix fold proteins
-
Clifton, I.J. et al. Structural studies on 2-oxoglutarate oxygenases and related double-stranded beta-helix fold proteins. J. Inorg. Biochem. 100, 644-669 (2006).
-
(2006)
J. Inorg. Biochem
, vol.100
, pp. 644-669
-
-
Clifton, I.J.1
-
8
-
-
33749576106
-
Histone demethylation by hydroxylation: Chemistry in action
-
Schneider, J. & Shilatifard, A. Histone demethylation by hydroxylation: chemistry in action. ACS Chem. Biol. 1, 75-81 (2006).
-
(2006)
ACS Chem. Biol
, vol.1
, pp. 75-81
-
-
Schneider, J.1
Shilatifard, A.2
-
9
-
-
33745847680
-
The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36
-
Klose, R.J. et al. The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36. Nature 442, 312-316 (2006).
-
(2006)
Nature
, vol.442
, pp. 312-316
-
-
Klose, R.J.1
-
10
-
-
33646138230
-
JHDM2A, a JmjC-containing H3K9 demethylase, facilitates transcription activation by androgen receptor
-
Yamane, K. et al. JHDM2A, a JmjC-containing H3K9 demethylase, facilitates transcription activation by androgen receptor. Cell 125, 483-495 (2006).
-
(2006)
Cell
, vol.125
, pp. 483-495
-
-
Yamane, K.1
-
11
-
-
33746332412
-
The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3
-
Cloos, P.A. et al. The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3. Nature 442, 307-311 (2006).
-
(2006)
Nature
, vol.442
, pp. 307-311
-
-
Cloos, P.A.1
-
12
-
-
33745146571
-
Jmjd2b antagonizes H3K9 trimethylation at pericentric heterochromatin in mammalian cells
-
Fodor, B.D. et al. Jmjd2b antagonizes H3K9 trimethylation at pericentric heterochromatin in mammalian cells. Genes Dev. 20, 1557-1562 (2006).
-
(2006)
Genes Dev
, vol.20
, pp. 1557-1562
-
-
Fodor, B.D.1
-
13
-
-
33846132573
-
Diversity within the JMJD2 histone demethylase family
-
Shin, S. & Janknecht, R. Diversity within the JMJD2 histone demethylase family. Biochem. Biophys. Res. Commun. 353, 973-977 (2007).
-
(2007)
Biochem. Biophys. Res. Commun
, vol.353
, pp. 973-977
-
-
Shin, S.1
Janknecht, R.2
-
14
-
-
33646124469
-
Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases
-
Whetstine, J.R. et al. Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases. Cell 125, 467-481 (2006).
-
(2006)
Cell
, vol.125
, pp. 467-481
-
-
Whetstine, J.R.1
-
15
-
-
33947152396
-
The Trithorax group protein Lid is a trimethyl histone H3K4 demethylase required for dMyc-induced cell growth
-
Secombe, J., Li, L., Carlos, L. & Eisenman, R.N. The Trithorax group protein Lid is a trimethyl histone H3K4 demethylase required for dMyc-induced cell growth. Genes Dev. 21, 537-551 (2007).
-
(2007)
Genes Dev
, vol.21
, pp. 537-551
-
-
Secombe, J.1
Li, L.2
Carlos, L.3
Eisenman, R.N.4
-
16
-
-
33847401344
-
The retinoblastoma binding protein RBP2 is an H3K4 demethylase
-
Klose, R.J. et al. The retinoblastoma binding protein RBP2 is an H3K4 demethylase. Cell 128, 889-900 (2007).
-
(2007)
Cell
, vol.128
, pp. 889-900
-
-
Klose, R.J.1
-
17
-
-
33847383585
-
Physical and functional association of a trimethyl H3K4 demethylase and Ring6a/MBLR, a Polycomb-like protein
-
Lee, M.G., Norman, J., Shilatifard, A. & Shiekhattar, R. Physical and functional association of a trimethyl H3K4 demethylase and Ring6a/MBLR, a Polycomb-like protein. Cell 128, 877-887 (2007).
-
(2007)
Cell
, vol.128
, pp. 877-887
-
-
Lee, M.G.1
Norman, J.2
Shilatifard, A.3
Shiekhattar, R.4
-
18
-
-
33847613217
-
Demethylation of trimethylated histone H3 Lys4 in vivo by JARID1 JmjC proteins
-
Seward, D.J. et al. Demethylation of trimethylated histone H3 Lys4 in vivo by JARID1 JmjC proteins. Nat. Struct. Mol. Biol. 14, 240-242 (2007).
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 240-242
-
-
Seward, D.J.1
-
19
-
-
33947302685
-
The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases
-
Iwase, S. et al. The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases. Cell 128, 1077-1088 (2007).
-
(2007)
Cell
, vol.128
, pp. 1077-1088
-
-
Iwase, S.1
-
20
-
-
34247253752
-
The trithorax-group gene in Drosophila little imaginal discs encodes a trimethylated histone H3 Lys4 demethylase
-
Eissenberg, J.C. et al. The trithorax-group gene in Drosophila little imaginal discs encodes a trimethylated histone H3 Lys4 demethylase. Nat. Struct. Mol. Biol. 14, 344-346 (2007).
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 344-346
-
-
Eissenberg, J.C.1
-
21
-
-
33947245128
-
RBP2 belongs to a family of demethylases, specific for tri-and dimethylated lysine 4 on histone 3
-
Christensen, J. et al. RBP2 belongs to a family of demethylases, specific for tri-and dimethylated lysine 4 on histone 3. Cell 128, 1063-1076 (2007).
-
(2007)
Cell
, vol.128
, pp. 1063-1076
-
-
Christensen, J.1
-
22
-
-
34247260388
-
The trithorax-group protein Lid is a histone H3 trimethyl-Lys4 demethylase
-
Lee, N. et al. The trithorax-group protein Lid is a histone H3 trimethyl-Lys4 demethylase. Nat. Struct. Mol. Biol. 14, 341-343 (2007).
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 341-343
-
-
Lee, N.1
-
23
-
-
33847660838
-
Yeast Jhd2p is a histone H3 Lys4 trimethyl demethylase
-
Liang, G., Klose, R.J., Gardner, K.E. & Zhang, Y. Yeast Jhd2p is a histone H3 Lys4 trimethyl demethylase. Nat. Struct. Mol. Biol. 14, 243-245 (2007).
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 243-245
-
-
Liang, G.1
Klose, R.J.2
Gardner, K.E.3
Zhang, Y.4
-
24
-
-
34347346108
-
Demethylation of histone H3K36 and H3K9 by Rph1: A vestige of an H3K9 methylation system in Saccharomyces cerevisiae?
-
Klose, R.J. et al. Demethylation of histone H3K36 and H3K9 by Rph1: a vestige of an H3K9 methylation system in Saccharomyces cerevisiae? Mol. Cell. Biol. 27, 3951-3961 (2007).
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 3951-3961
-
-
Klose, R.J.1
-
25
-
-
16544389546
-
Identification and characterization of JMJD2 family genes in silico
-
Katoh, M. Identification and characterization of JMJD2 family genes in silico. Int. J. Oncol. 24, 1623-1628 (2004).
-
(2004)
Int. J. Oncol
, vol.24
, pp. 1623-1628
-
-
Katoh, M.1
-
26
-
-
33847392500
-
Cooperative demethylation by JMJD2C and LSD1 promotes androgen receptor-dependent gene expression
-
Wissmann, M. et al. Cooperative demethylation by JMJD2C and LSD1 promotes androgen receptor-dependent gene expression. Nat. Cell Biol. 9, 347-353 (2007).
-
(2007)
Nat. Cell Biol
, vol.9
, pp. 347-353
-
-
Wissmann, M.1
-
27
-
-
33646505724
-
Structural insights into histone demethylation by JMJD2 family members
-
Chen, Z. et al. Structural insights into histone demethylation by JMJD2 family members. Cell 125, 691-702 (2006).
-
(2006)
Cell
, vol.125
, pp. 691-702
-
-
Chen, Z.1
-
28
-
-
0038419637
-
Mechanism of multiple lysine methylation by the SET domain enzyme Rubisco LSMT
-
Trievel, R.C., Flynn, E.M., Houtz, R.L. & Hurley, J.H. Mechanism of multiple lysine methylation by the SET domain enzyme Rubisco LSMT. Nat. Struct. Biol. 10, 545-552 (2003).
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 545-552
-
-
Trievel, R.C.1
Flynn, E.M.2
Houtz, R.L.3
Hurley, J.H.4
-
29
-
-
33745842198
-
Catalytic roles for carbon-oxygen hydrogen bonding in SET domain lysine methyltransferases
-
Couture, J.F., Hauk, G., Thompson, M.J., Blackburn, G.M. & Trievel, R.C. Catalytic roles for carbon-oxygen hydrogen bonding in SET domain lysine methyltransferases. J. Biol. Chem. 281, 19280-19287 (2006).
-
(2006)
J. Biol. Chem
, vol.281
, pp. 19280-19287
-
-
Couture, J.F.1
Hauk, G.2
Thompson, M.J.3
Blackburn, G.M.4
Trievel, R.C.5
-
30
-
-
0028978764
-
The occurrence of C-H⋯O hydrogen bonds in proteins
-
Derewenda, Z.S., Lee, L. & Derewenda, U. The occurrence of C-H⋯O hydrogen bonds in proteins. J. Mol. Biol. 252, 248-262 (1995).
-
(1995)
J. Mol. Biol
, vol.252
, pp. 248-262
-
-
Derewenda, Z.S.1
Lee, L.2
Derewenda, U.3
-
31
-
-
0043127085
-
Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains
-
Fischle, W. et al. Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains. Genes Dev. 17, 1870-1881 (2003).
-
(2003)
Genes Dev
, vol.17
, pp. 1870-1881
-
-
Fischle, W.1
-
32
-
-
33646438365
-
Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A
-
Huang, Y., Fang, J., Bedford, M.T., Zhang, Y. & Xu, R.M. Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A. Science 312, 748-751 (2006).
-
(2006)
Science
, vol.312
, pp. 748-751
-
-
Huang, Y.1
Fang, J.2
Bedford, M.T.3
Zhang, Y.4
Xu, R.M.5
-
33
-
-
33845666681
-
Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair
-
Botuyan, M.V. et al. Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair. Cell 127, 1361-1373 (2006).
-
(2006)
Cell
, vol.127
, pp. 1361-1373
-
-
Botuyan, M.V.1
-
34
-
-
33745809637
-
Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF
-
Li, H. et al. Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature 442, 91-95 (2006).
-
(2006)
Nature
, vol.442
, pp. 91-95
-
-
Li, H.1
-
35
-
-
33745818717
-
Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2
-
Pena, P.V. et al. Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2. Nature 442, 100-103 (2006).
-
(2006)
Nature
, vol.442
, pp. 100-103
-
-
Pena, P.V.1
-
36
-
-
33645502395
-
Tudor, MBT and chromo domains gauge the degree of lysine methylation
-
397-403
-
Kim, J. et al. Tudor, MBT and chromo domains gauge the degree of lysine methylation. EMBO Rep. 7, 397-403 (2006).
-
(2006)
EMBO Rep
, vol.7
-
-
Kim, J.1
-
37
-
-
0037086355
-
Structure of HP1 chromodomain bound to a lysine 9-methylated histone H3 tail
-
Jacobs, S.A. & Khorasanizadeh, S. Structure of HP1 chromodomain bound to a lysine 9-methylated histone H3 tail. Science 295, 2080-2083 (2002).
-
(2002)
Science
, vol.295
, pp. 2080-2083
-
-
Jacobs, S.A.1
Khorasanizadeh, S.2
-
38
-
-
0037034911
-
Structure of the HP1 chromodomain bound to histone H3 methylated at lysine 9
-
Nielsen, P.R. et al. Structure of the HP1 chromodomain bound to histone H3 methylated at lysine 9. Nature 416, 103-107 (2002).
-
(2002)
Nature
, vol.416
, pp. 103-107
-
-
Nielsen, P.R.1
-
39
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (1997).
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
40
-
-
85027633237
-
Crystal orientation and X-ray pattern prediction routines for area-detector diffractometer systems in macromolecular crystallography
-
Messerschmidt, A. & Pflugrath, J.W. Crystal orientation and X-ray pattern prediction routines for area-detector diffractometer systems in macromolecular crystallography. J. Appl. Cryst. 20, 306-315 (1987).
-
(1987)
J. Appl. Cryst
, vol.20
, pp. 306-315
-
-
Messerschmidt, A.1
Pflugrath, J.W.2
-
41
-
-
0000560808
-
MOLREP: An automated program for molecular replacement
-
Vagin, A. & Teplyakov, A. MOLREP: an automated program for molecular replacement. J. Appl. Cryst. 30, 1022-1025 (1997).
-
(1997)
J. Appl. Cryst
, vol.30
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
42
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T.A., Zou, J.Y., Cowan, S.W. & Kjeldgaard, M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47, 110-119 (1991).
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
43
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G.N., Vagin, A.A. & Dodson, E.J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53, 240-255 (1997).
-
(1997)
Acta Crystallogr. D Biol. Crystallogr
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
44
-
-
0001513484
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R.A., MacArthur, M.W., Moss, D.S. & Thornton, J.M. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 24, 946-950 (1993).
-
(1993)
J. Appl. Cryst
, vol.24
, pp. 946-950
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
45
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee, B. & Richards, F.M. The interpretation of protein structures: estimation of static accessibility. J. Mol. Biol. 55, 379-400 (1971).
-
(1971)
J. Mol. Biol
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
46
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls, A., Sharp, K.A. & Honig, B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11, 281-296 (1991).
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
47
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
Guex, N. & Peitsch, M.C. SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis 18, 2714-2723 (1997).
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
48
-
-
0034326785
-
A spectrophotometric method for determining the oxidative deamination of methylamine by the amine oxidases
-
Lizcano, J.M., Unzeta, M. & Tipton, K.F. A spectrophotometric method for determining the oxidative deamination of methylamine by the amine oxidases. Anal. Biochem. 286, 75-79 (2000).
-
(2000)
Anal. Biochem
, vol.286
, pp. 75-79
-
-
Lizcano, J.M.1
Unzeta, M.2
Tipton, K.F.3
-
49
-
-
0032964029
-
An enzyme-based formaldehyde assay and its utility in a sponge sterol biosynthetic pathway
-
Kerr, R.G. & Kelly, K. An enzyme-based formaldehyde assay and its utility in a sponge sterol biosynthetic pathway. J. Nat. Prod. 62, 201-202 (1999).
-
(1999)
J. Nat. Prod
, vol.62
, pp. 201-202
-
-
Kerr, R.G.1
Kelly, K.2
|