-
1
-
-
84960376493
-
The SCP and compressed domain analysis of biological sequences
-
August
-
Adjeroh D.A., and Feng J., "The SCP and compressed domain analysis of biological sequences", Proc., IEEE Bioinformatics Conference, August 2003, pp. 587-592.
-
(2003)
Proc., IEEE Bioinformatics Conference
, pp. 587-592
-
-
Adjeroh, D.A.1
Feng, J.2
-
2
-
-
13844291872
-
DNA sequence compression using the Burrows-Wheeler Transform
-
August 2003
-
Adjeroh D.A., Zhang Y, Mukherjee A., Powell M., and Bell, T.C., "DNA sequence compression using the Burrows-Wheeler Transform", Proc., IEEE Bioinformatics Conference, August 2003, pp. 303-313, 2002
-
(2002)
Proc., IEEE Bioinformatics Conference
, pp. 303-313
-
-
Adjeroh, D.A.1
Zhang Y2
Mukherjee, A.3
Powell, M.4
Bell, T.C.5
-
3
-
-
2642584062
-
Offline compression by greedy textual substitution
-
Apostolico A and Lonardi S, "Offline compression by greedy textual substitution", Proceedings of the IEEE, 88 (11), 1733-1744, 2000
-
(2000)
Proceedings of the IEEE
, vol.88
, Issue.11
, pp. 1733-1744
-
-
Apostolico A1
Lonardi S2
-
4
-
-
84948415150
-
Searching BWT compressed text with the Boyer-Moore algorithm and binary search
-
Snowbird, Utah, April 2-4
-
Bell T.C, Powell M., Mukherjee A. and Adjeroh D. A. "Searching BWT compressed text with the Boyer-Moore algorithm and binary search", Proc., IEEE Data Compression Conference, Snowbird, Utah, April 2-4, 2002.
-
(2002)
Proc., IEEE Data Compression Conference
-
-
Bell, T.C.1
Powell, M.2
Mukherjee, A.3
Adjeroh, D.A.4
-
5
-
-
0003573193
-
-
Technical Report, Digital Equipment Corporation, Palo Alto, CA
-
Burrows M. and Wheeler D.J., "A block-sorting lossless data compression algorithm", Technical Report, Digital Equipment Corporation, Palo Alto, CA, 1994.
-
(1994)
A Block-Sorting Lossless Data Compression Algorithm
-
-
Burrows, M.1
Wheeler, D.J.2
-
6
-
-
0001941057
-
A compression algorithm for DNA sequences and its applications in genome comparison
-
Chen X., Kwong S. and Li M, "A compression algorithm for DNA sequences and its applications in genome comparison", Proc., 10th Workshop on Genome Informatics (GIW'99), pp. 52-61, 1999.
-
(1999)
Proc., 10th Workshop on Genome Informatics (GIW'99)
, pp. 52-61
-
-
Chen, X.1
Kwong, S.2
Li M3
-
7
-
-
0021405335
-
DATA COMPRESSION USING ADAPTIVE CODING AND PARTIAL STRING MATCHING.
-
J.G. Cleary and I.H. Witten, "Data compression using adaptive coding and partial string matching", IEEE Transactions on Communication, 32(4), 396-402, 1984 (Pubitemid 14564864)
-
(1984)
IEEE Transactions on Communications
, vol.COM-32
, Issue.4
, pp. 396-402
-
-
Cleary John, G.1
Witten Ian, H.2
-
9
-
-
26944465400
-
Dude, where's my phenotype? Dealing with redundancy in signaling networks
-
DOI 10.1104/pp.104.900152
-
Cutler S and McCourt P, "Dude, where's my phenotype dealing with redundancy in signaling networks", Vision Statement of Plant Physiology. 138:558-559, 2005 (Pubitemid 43793133)
-
(2005)
Plant Physiology
, vol.138
, Issue.2
, pp. 558-559
-
-
Cutler, S.1
McCourt, P.2
-
12
-
-
0031989115
-
Genetic redundancy in vertebrates: Polyploidy and persistence of genes encoding multidomain proteins
-
PII S016895259701367X
-
Gibson, T. J. and Spring, J. "Genetic redundancy in vertebrates: polyploidy and persistence of genes encoding multidomain proteins." Trends Genet. 14:46-49.1998 (Pubitemid 128714327)
-
(1998)
Trends in Genetics
, vol.14
, Issue.2
, pp. 46-49
-
-
Gibson, T.J.1
Spring, J.2
-
13
-
-
0000100455
-
A new challenge for compression algorithms: Genetic sequences
-
DOI 10.1016/0306-4573(94)90014-0
-
Grumbach S and Tahi F., "A new challenge for compression algorithms: genetic sequences", Info. Processing & Management, 30: 875-886, 1994. (Pubitemid 124012808)
-
(1994)
Information Processing and Management
, vol.30
, Issue.6
, pp. 875-886
-
-
Grumbach, S.1
-
14
-
-
0347033256
-
Role of duplicate genes in genetic robustness against null mutations
-
DOI 10.1038/nature01198
-
Gu Z, Steinmetz L, Gu X, Scharle, C, Dacis, R and Li W. "Role of duplicate genes in genetic robustness against null mutations". Nature 421:63-66 2003 (Pubitemid 36077084)
-
(2003)
Nature
, vol.421
, Issue.6918
, pp. 63-66
-
-
Gu, Z.1
Steinmetz, L.M.2
Gu, X.3
Scharfe, C.4
Davis, R.W.5
Li, W.-H.6
-
15
-
-
0036187351
-
Extent of gene duplication in the genomes of Drosophila, nematode, and yeast
-
Gu Z, Cavalcanti A, Chen F, Bouman, P and Li W. "Extent of gene deplication in the genomes of drosophila, nematode, and yeast". Molecular Biology and Evolution, 19(3):256-262 2002. (Pubitemid 34184598)
-
(2002)
Molecular Biology and Evolution
, vol.19
, Issue.3
, pp. 256-262
-
-
Gu, Z.1
Cavalcanti, A.2
Chen, F.-C.3
Bouman, P.4
Li, W.-H.5
-
17
-
-
19344372749
-
Gene duplication: The genomic trade in spare parts
-
DOI 10.1371/journal.pbio.0020206
-
M. Hurles, "Gene duplication: The genomic trade in spare parts", PLoS Biology, 2(7).e205:S13-S19, 2004. (Pubitemid 39234401)
-
(2004)
PLoS Biology
, vol.2
, Issue.7
-
-
Hurles, M.1
-
18
-
-
13844281512
-
An efficient normalized maximum likelihood algorithm for DNA sequence compression
-
Korodi G and Tabus I, "An efficient normalized maximum likelihood algorithm for DNA sequence compression", ACM Transactions on Information Systems, 23(1):3-34 2005
-
(2005)
ACM Transactions on Information Systems
, vol.23
, Issue.1
, pp. 3-34
-
-
Korodi, G.1
Tabus, I.2
-
21
-
-
0030699611
-
Significantly lower entropy estimates for natural DNA sequences
-
Snowbird, UT
-
Loewenstern, D. and Yainilos, P., "Significantly lower entropy estimates for natural DNA sequences", Proc., IEEE Data Compression Conference, Snowbird, UT, pp. 151-161, 1997.
-
(1997)
Proc., IEEE Data Compression Conference
, pp. 151-161
-
-
Loewenstern, D.1
Yainilos, P.2
-
22
-
-
65749117464
-
-
Department of Information Science, University of Tokyo, 2000
-
Matsumoto T., Sadakane K. and Imai H, "Biological sequence compression algorithms", Department of Information Science, University of Tokyo, 2000. http://citeseer.nj.nec.com/457261.html
-
Biological Sequence Compression Algorithms
-
-
Matsumoto, T.1
Sadakane, K.2
Imai, H.3
-
24
-
-
0033151537
-
Redundancy as a way of life - IAA metabolism
-
DOI 10.1016/S1369-5266(99)80037-5
-
Normanly J and Barteltl B, "Redundancy as a way of life - IAA metabolism", Current Opinion in Plant Biology, 2:207-213, 1999 (Pubitemid 29291814)
-
(1999)
Current Opinion in Plant Biology
, vol.2
, Issue.3
, pp. 207-213
-
-
Normanly, J.1
Bartel, B.2
-
25
-
-
0030836756
-
Evolution of genetic redundancy
-
DOI 10.1038/40618
-
Nowak, M. A., Boerlijst, M. C., Cooke, J. and Smith, J.M, "Evolution of genetic redundancy", Nature 388:167-171.1997 (Pubitemid 27297451)
-
(1997)
Nature
, vol.388
, Issue.6638
, pp. 167-170
-
-
Nowak, M.A.1
Boerlijst, M.C.2
Cooke, J.3
Smith, J.M.4
-
26
-
-
0027315864
-
Drosophila evolution challenges postulated redundancy in the E(spl) gene complex
-
Maier D, Marte BM, Schafer W, Yu Y and Preiss A, "Drosophila evolution challenges postulated redundancy in the E(spl) gene complex", Proceedings of the National Academy of Sciences, 90:5464-5468.1993 (Pubitemid 23176181)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.12
, pp. 5464-5468
-
-
Maier, D.1
Marte, B.M.2
Schafer, W.3
Yu, Y.4
Preiss, A.5
-
27
-
-
0030935318
-
Detection of significant patterns by compression algorithms: The case of approximate tandem repeats in DNA sequences
-
Rival, E., Delgrange, O., Delahaye, J.P., Dauchet, M., Delorme, M. Henaut, A. and Ollivier, E., "Detection of significant patterns by compression algorithms: the case of approximate tandem repeats in DNA sequences", CABIOS, 13: 131-136, 1997 (Pubitemid 27189997)
-
(1997)
Computer Applications in the Biosciences
, vol.13
, Issue.2
, pp. 131-136
-
-
Rivals, E.1
Delgrange, O.2
Delahaye, J.-P.3
Dauchet, M.4
Delorme, M.-O.5
Henaut, A.6
Ollivier, E.7
-
28
-
-
53649092881
-
A block coding method that leads to significantly lower entropy values for the proteins and coding sections of Haemophilus influenzae
-
August
-
Sampath G, "A block coding method that leads to significantly lower entropy values for the proteins and coding sections of Haemophilus influenzae", Proc., IEEE Bioinformatics Conference, August 2003, pp.287-293.
-
(2003)
Proc., IEEE Bioinformatics Conference
, pp. 287-293
-
-
Sampath, G.1
-
29
-
-
0036083579
-
Sequence complexity profiles of prokaryotic genomic sequences: A fast algorithm for calculating linguistic complexity
-
Troyanskaya OG, Arbell O, Koren Y, Landau GM, and Bolshoy A, "Sequence complexity profiles of prokaryotic genomic sequences: A fast algorithm for calculating linguistic complexity", Bioinformatics, 18(5), 679-688, 2002; (Pubitemid 34679114)
-
(2002)
Bioinformatics
, vol.18
, Issue.5
, pp. 679-688
-
-
Troyanskaya, O.G.1
Arbell, O.2
Koren, Y.3
Landau, G.M.4
Bolshoy, A.5
|