-
1
-
-
13844291872
-
DNA sequence compression using the Burrows-Wheeler Transform
-
ADJEROH, D., ZHANG, Y., MUKHERJEE, A., POWELL, M., AND BELL, T. 2002. DNA sequence compression using the Burrows-Wheeler Transform. In IEEE Computer Society Bioinformatics Conference, 303.
-
(2002)
IEEE Computer Society Bioinformatics Conference
, pp. 303
-
-
Adjeroh, D.1
Zhang, Y.2
Mukherjee, A.3
Powell, M.4
Bell, T.5
-
2
-
-
0025183708
-
Basic local alignment search tool
-
ALTSCHUL, S., GISH, W., MILLER, W., MYERS, E., AND LIPMAN, D. 1990. Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.5
-
4
-
-
0036947893
-
DNACompress: Fast and effective DNA sequence compression
-
CHEN, X., LI, M., MA, B., AND TROMP, J. 2002. DNACompress: fast and effective DNA sequence compression. Bioinformatics 18, 1696-1698.
-
(2002)
Bioinformatics
, vol.18
, pp. 1696-1698
-
-
Chen, X.1
Li, M.2
Ma, B.3
Tromp, J.4
-
6
-
-
0000100455
-
A new challenge for compression algorithms: Genetic sequences
-
GRUMBACH, S. AND TAHI, F. 1994. A new challenge for compression algorithms: Genetic sequences. J. Inform. Process. Manage. 30, 6, 875-886.
-
(1994)
J. Inform. Process. Manage.
, vol.30
, Issue.6
, pp. 875-886
-
-
Grumbach, S.1
Tahi, F.2
-
8
-
-
0035102453
-
An information based sequence distance and its application to whole mitochondrial genome phylogeny
-
LI, M., BADGER, J., CHEN, X., KWONG, S., KEARNEY, P., AND ZHANG, H. 2001. An information based sequence distance and its application to whole mitochondrial genome phylogeny. Bioinformatics 17, 149-154.
-
(2001)
Bioinformatics
, vol.17
, pp. 149-154
-
-
Li, M.1
Badger, J.2
Chen, X.3
Kwong, S.4
Kearney, P.5
Zhang, H.6
-
9
-
-
0038415957
-
The similarity metric
-
LI, M., CHEN, X., LI, X., MA, B., AND VITÁNYI, P. 2003. The similarity metric. In 14th Annual ACM-SIAM Symposium on Discrete Algorithms. 863-872.
-
(2003)
14th Annual ACM-SIAM Symposium on Discrete Algorithms
, pp. 863-872
-
-
Li, M.1
Chen, X.2
Li, X.3
Ma, B.4
Vitányi, P.5
-
11
-
-
0036202921
-
PatternHunter: Faster and more sensitive homology search
-
MA, B., TROMP, J., AND LI, M. 2002. PatternHunter: Faster and more sensitive homology search. Bioinformatics 18, 440-445.
-
(2002)
Bioinformatics
, vol.18
, pp. 440-445
-
-
Ma, B.1
Tromp, J.2
Li, M.3
-
12
-
-
0034578442
-
Biological sequence compression algorithms
-
Universal Academy Press
-
MATSUMOTO, T., SADAKANE, K., AND IMAI, H. 2000. Biological sequence compression algorithms. In Genome Informatics Workshop. Universal Academy Press, 43-52.
-
(2000)
Genome Informatics Workshop
, pp. 43-52
-
-
Matsumoto, T.1
Sadakane, K.2
Imai, H.3
-
13
-
-
0023989064
-
Improved tools for biological sequence comparison
-
PEARSON, W. AND LIPMAN, D. 1988. Improved tools for biological sequence comparison. In Proc. Natl. Acad. Sci. USA. Vol. 85. 2444-2448.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.1
Lipman, D.2
-
14
-
-
0000506580
-
Generalized Kraft inequality and arithmetic coding
-
RISSANEN, J. 1976. Generalized Kraft inequality and arithmetic coding. IBM J. Res. Dev. 20, 3, 198-203.
-
(1976)
IBM J. Res. Dev.
, vol.20
, Issue.3
, pp. 198-203
-
-
Rissanen, J.1
-
15
-
-
0004339452
-
A guaranteed compression scheme for repetitive DNA sequences
-
LIFL Lille I Univ.
-
RIVALS, E., DELAHAYE, J., DAUCHET, M., AND DELGRANGE, O. 1995. A guaranteed compression scheme for repetitive DNA sequences. Tech. Rep. IT-285, LIFL Lille I Univ.
-
(1995)
Tech. Rep.
, vol.IT-285
-
-
Rivals, E.1
Delahaye, J.2
Dauchet, M.3
Delgrange, O.4
-
16
-
-
34547630306
-
DNA sequence compression using the normalized maximum likelihood model for discrete regression
-
TABUS, I., KORODI, G., AND RISSANEN, J. 2003a. DNA sequence compression using the normalized maximum likelihood model for discrete regression. In Proceedings of the Data Compression Conference. 253-262.
-
(2003)
Proceedings of the Data Compression Conference
, pp. 253-262
-
-
Tabus, I.1
Korodi, G.2
Rissanen, J.3
-
17
-
-
0037399771
-
Classification and feature gene selection using the normalized maximum likelihood model for discrete regression
-
TABUS, I., RISSANEN, J., AND ASTOLA, J. 2003b. Classification and feature gene selection using the normalized maximum likelihood model for discrete regression. Signal Processing, Special Issue on Genomic Signal Processing 83, 4 (April), 713-727.
-
(2003)
Signal Processing, Special Issue on Genomic Signal Processing
, vol.83
, Issue.4 APRIL
, pp. 713-727
-
-
Tabus, I.1
Rissanen, J.2
Astola, J.3
-
18
-
-
0020714456
-
Rapid similarity searches of nucleic acid and protein data banks
-
WILBUR, W. AND LIPMAN, D. 1983. Rapid similarity searches of nucleic acid and protein data banks. In Proc. Natl. Acad. Sci. USA. Vol. 80. 726-730.
-
(1983)
Proc. Natl. Acad. Sci. USA.
, vol.80
, pp. 726-730
-
-
Wilbur, W.1
Lipman, D.2
-
19
-
-
0030663490
-
Compression of nucleotide databases for fast searching
-
WILLIAMS, H. AND ZOBEL, J. 1997. Compression of nucleotide databases for fast searching. Computer Applications in the Biosciences 13, 5, 549-554.
-
(1997)
Computer Applications in the Biosciences
, vol.13
, Issue.5
, pp. 549-554
-
-
Williams, H.1
Zobel, J.2
-
20
-
-
0017493286
-
A universal algorithm for sequential data compression
-
ZIV, J. AND LEMPEL, A. 1977. A universal algorithm for sequential data compression. IEEE Trans. Inform. Theory 23, 3, 337-343.
-
(1977)
IEEE Trans. Inform. Theory
, vol.23
, Issue.3
, pp. 337-343
-
-
Ziv, J.1
Lempel, A.2
|