메뉴 건너뛰기




Volumn 72, Issue 3, 2006, Pages 1843-1851

Using DNA microarrays to identify library-independent markers for bacterial source tracking

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GENES; METABOLISM; POLLUTION;

EID: 33644962971     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.72.3.1843-1851.2006     Document Type: Article
Times cited : (26)

References (31)
  • 1
    • 0034126848 scopus 로고    scopus 로고
    • Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes
    • Bernhard, A. E., and K. G. Field. 2000. Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes. Appl. Environ. Microbiol. 66:1587-1594.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1587-1594
    • Bernhard, A.E.1    Field, K.G.2
  • 2
    • 0033774937 scopus 로고    scopus 로고
    • A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes coding for 16S rRNA
    • Bernhard, A. E., and K. G. Field. 2000. A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes coding for 16S rRNA. Appl. Environ. Microbiol. 66:4571-4574.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4571-4574
    • Bernhard, A.E.1    Field, K.G.2
  • 4
    • 0037316625 scopus 로고    scopus 로고
    • Mixed-genome microarrays reveal multiple serotype- and lineage-specific differences among strains of Listeria monocytogenes
    • Call, D. R., M. K. Borucki, and T. E. Besser. 2003. Mixed-genome microarrays reveal multiple serotype- and lineage-specific differences among strains of Listeria monocytogenes. J. Clin. Microbiol. 41:632-639.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 632-639
    • Call, D.R.1    Borucki, M.K.2    Besser, T.E.3
  • 5
    • 0035320662 scopus 로고    scopus 로고
    • Identification of fecal Escherichia coli from humans and animals by ribotyping
    • Carson, C. A., B. L. Shear, M. R. Ellersieck, and A. Asfaw. 2001. Identification of fecal Escherichia coli from humans and animals by ribotyping. Appl. Environ. Microbiol. 67:1503-1507.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1503-1507
    • Carson, C.A.1    Shear, B.L.2    Ellersieck, M.R.3    Asfaw, A.4
  • 7
    • 4644301880 scopus 로고    scopus 로고
    • Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes
    • Dick, L. K., and K. G. Field. 2004. Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes. Appl. Environ. Microbiol. 70:5695-5697.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5695-5697
    • Dick, L.K.1    Field, K.G.2
  • 8
    • 0034130242 scopus 로고    scopus 로고
    • Use of repetitive DNA sequences and PCR to differentiate Escherichia coli isolates from human and animal sources
    • Dombek, P. E., L. K. Johnson, S. T. Zimmerley, and M. J. Sadowsky. 2000. Use of repetitive DNA sequences and PCR to differentiate Escherichia coli isolates from human and animal sources. Appl. Environ. Microbiol. 66:2572-2577.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2572-2577
    • Dombek, P.E.1    Johnson, L.K.2    Zimmerley, S.T.3    Sadowsky, M.J.4
  • 10
    • 0036628887 scopus 로고    scopus 로고
    • Antibiotic resistance profiles to determine sources of fecal contamination in a rural Virginia watershed
    • Graves, A. K., C. Hagedorn, A. Teetor, M. Mahal, A. M. Booth, and R. B. Reneau, Jr. 2002. Antibiotic resistance profiles to determine sources of fecal contamination in a rural Virginia watershed. J. Environ. Qual. 31:1300-1308.
    • (2002) J. Environ. Qual. , vol.31 , pp. 1300-1308
    • Graves, A.K.1    Hagedorn, C.2    Teetor, A.3    Mahal, M.4    Booth, A.M.5    Reneau Jr., R.B.6
  • 12
    • 0032708728 scopus 로고    scopus 로고
    • Determining sources of fecal pollution in a rural Virginia watershed with antibiotic resistance patterns in fecal streptococci
    • Hagedorn, C., S. L. Robinson, J. R. Filtz, S. M. Grubbs, T. A. Angier, and R. B. Reneau, Jr. 1999. Determining sources of fecal pollution in a rural Virginia watershed with antibiotic resistance patterns in fecal streptococci. Appl. Environ. Microbiol. 65:5522-5531.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5522-5531
    • Hagedorn, C.1    Robinson, S.L.2    Filtz, J.R.3    Grubbs, S.M.4    Angier, T.A.5    Reneau Jr., R.B.6
  • 13
    • 0036628884 scopus 로고    scopus 로고
    • Geographic variability of Escherichia coli ribotypes from animals in Idaho and Georgia
    • Hartel, P. G., J. D. Summer, J. L. Hill, J. V. Collins, J. A. Entry, and W. I. Segars. 2002. Geographic variability of Escherichia coli ribotypes from animals in Idaho and Georgia. J. Environ. Qual. 31:1273-1278.
    • (2002) J. Environ. Qual. , vol.31 , pp. 1273-1278
    • Hartel, P.G.1    Summer, J.D.2    Hill, J.L.3    Collins, J.V.4    Entry, J.A.5    Segars, W.I.6
  • 14
    • 0033831590 scopus 로고    scopus 로고
    • Classification of antibiotic resistance patterns of indicator bacteria by discriminant analysis: Use in predicting the source of fecal contamination in subtropical waters
    • Harwood, V. J., J. Whitlock, and V. Withington. 2000. Classification of antibiotic resistance patterns of indicator bacteria by discriminant analysis: use in predicting the source of fecal contamination in subtropical waters. Appl. Environ. Microbiol. 66:3698-3704.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3698-3704
    • Harwood, V.J.1    Whitlock, J.2    Withington, V.3
  • 15
    • 4143115645 scopus 로고    scopus 로고
    • Sample size, library composition, and genotypic diversity among natural populations of Escherichia coli from different animals influence accuracy of determining sources of fecal pollution
    • Johnson, L. K., M. B. Brown, E. A. Carruthers, J. A. Ferguson, P. E. Dombek, and M. J. Sadowsky. 2004. Sample size, library composition, and genotypic diversity among natural populations of Escherichia coli from different animals influence accuracy of determining sources of fecal pollution. Appl. Environ. Miciobiol. 70:4478-4485.
    • (2004) Appl. Environ. Miciobiol. , vol.70 , pp. 4478-4485
    • Johnson, L.K.1    Brown, M.B.2    Carruthers, E.A.3    Ferguson, J.A.4    Dombek, P.E.5    Sadowsky, M.J.6
  • 16
    • 4344642211 scopus 로고    scopus 로고
    • Molecular biology and DNA microarray technology for microbial quality monitoring of water
    • Lemarchand, K., L. Masson, and R. Brousseau. 2004. Molecular biology and DNA microarray technology for microbial quality monitoring of water. Crit. Rev. Microbiol. 30:145-172.
    • (2004) Crit. Rev. Microbiol. , vol.30 , pp. 145-172
    • Lemarchand, K.1    Masson, L.2    Brousseau, R.3
  • 17
    • 1642345523 scopus 로고    scopus 로고
    • A comparison of AFLP and ERIC-PCR analyses for discriminating Escherichia coli from cattle, pig and human sources
    • Leung, K. T., R. Mackereth, Y. C. Tien, and E. Topp. 2004. A comparison of AFLP and ERIC-PCR analyses for discriminating Escherichia coli from cattle, pig and human sources. FEMS Microbiol. Ecol. 47:111-119.
    • (2004) FEMS Microbiol. Ecol. , vol.47 , pp. 111-119
    • Leung, K.T.1    Mackereth, R.2    Tien, Y.C.3    Topp, E.4
  • 18
    • 0037096123 scopus 로고    scopus 로고
    • PCR detection of specific pathogens in water: A risk-based analysis
    • Loge, F. J., D. E. Thompson, and D. R. Call. 2002. PCR detection of specific pathogens in water: a risk-based analysis. Environ. Sci. Technol. 36:2754-2759.
    • (2002) Environ. Sci. Technol. , vol.36 , pp. 2754-2759
    • Loge, F.J.1    Thompson, D.E.2    Call, D.R.3
  • 19
    • 4444356159 scopus 로고    scopus 로고
    • Source tracking fecal bacteria in water: A critical review of current methods
    • Meays, C. L., K. Broersma, R. Nordin, and A. Mazumder. 2004. Source tracking fecal bacteria in water: a critical review of current methods. J. Environ. Manage. 73:71-79.
    • (2004) J. Environ. Manage. , vol.73 , pp. 71-79
    • Meays, C.L.1    Broersma, K.2    Nordin, R.3    Mazumder, A.4
  • 20
    • 2442652798 scopus 로고    scopus 로고
    • Sequence-based source tracking of Escherichia coli based on genetic diversity of beta-glucuronidase
    • Ram, J. L., R. P. Ritchie, J. Fang, F. S. Gonzales, and J. P. Selegean. 2004. Sequence-based source tracking of Escherichia coli based on genetic diversity of beta-glucuronidase. J. Environ. Qual. 33:1024-1032.
    • (2004) J. Environ. Qual. , vol.33 , pp. 1024-1032
    • Ram, J.L.1    Ritchie, R.P.2    Fang, J.3    Gonzales, F.S.4    Selegean, J.P.5
  • 21
    • 11244270375 scopus 로고    scopus 로고
    • Potential use of a host associated molecular marker in Enterococcus faecium as an index of human fecal pollution
    • Scott, T. M., T. M. Jenkins, J. Lukasik, and J. B. Rose. 2005. Potential use of a host associated molecular marker in Enterococcus faecium as an index of human fecal pollution. Environ. Sci. Technol. 39:283-287.
    • (2005) Environ. Sci. Technol. , vol.39 , pp. 283-287
    • Scott, T.M.1    Jenkins, T.M.2    Lukasik, J.3    Rose, J.B.4
  • 22
    • 0037313120 scopus 로고    scopus 로고
    • Geographical variation in ribotype profiles of Escherichia coli isolates from humans, swine, poultry, beef, and dairy cattle in Florida
    • Scott, T. M., S. Parveen, K. M. Portier, J. B. Rose, M. L. Tamplin, S. R. Farrah, A. Koo, and J. Lukasik. 2003. Geographical variation in ribotype profiles of Escherichia coli isolates from humans, swine, poultry, beef, and dairy cattle in Florida. Appl. Environ. Microbiol. 69:1089-1092.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1089-1092
    • Scott, T.M.1    Parveen, S.2    Portier, K.M.3    Rose, J.B.4    Tamplin, M.L.5    Farrah, S.R.6    Koo, A.7    Lukasik, J.8
  • 25
    • 19744372620 scopus 로고    scopus 로고
    • Combining suppression subtractive hybridization and microarrays to map the intraspecies phytogeny of Flavobacterium psychrophilum
    • Soule, M., K. Cain, S. LaFrentz, and D. R. Call. 2005. Combining suppression subtractive hybridization and microarrays to map the intraspecies phytogeny of Flavobacterium psychrophilum. Infect. Immun. 73:3799-3802.
    • (2005) Infect. Immun. , vol.73 , pp. 3799-3802
    • Soule, M.1    Cain, K.2    LaFrentz, S.3    Call, D.R.4
  • 28
    • 3242799851 scopus 로고    scopus 로고
    • Simultaneous discrimination between 15 fish pathogens by using 16S ribosomal DNA PCR and DNA microarrays
    • Warsen, A. E., M. J. Krug, S. LaFrentz, D. R. Stanek, F. J. Loge, and D. R. Call. 2004. Simultaneous discrimination between 15 fish pathogens by using 16S ribosomal DNA PCR and DNA microarrays. Appl. Environ. Microbiol. 70:4216-4221.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 4216-4221
    • Warsen, A.E.1    Krug, M.J.2    LaFrentz, S.3    Stanek, D.R.4    Loge, F.J.5    Call, D.R.6
  • 29
    • 0036628885 scopus 로고    scopus 로고
    • Potential of Enterococcus faecalis as a human fecal indicator for microbial source tracking
    • Wheeler, A. L., P. G. Hartel, D. G. Godfrey, J. L. Hill, and W. I. Segars. 2002. Potential of Enterococcus faecalis as a human fecal indicator for microbial source tracking. J. Environ. Qual. 31:1286-1293.
    • (2002) J. Environ. Qual. , vol.31 , pp. 1286-1293
    • Wheeler, A.L.1    Hartel, P.G.2    Godfrey, D.G.3    Hill, J.L.4    Segars, W.I.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.