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Volumn 18, Issue 4, 2007, Pages 1036-1052

Design and synthesis of efficient fluorescent dyes for incorporation into DNA backbone and biomolecule detection

Author keywords

[No Author keywords available]

Indexed keywords

BIOMOLECULES; CHLORINE COMPOUNDS; DNA; ENERGY TRANSFER; FORSTER RESONANCE ENERGY TRANSFER; SYNTHESIS (CHEMICAL);

EID: 34547162881     PISSN: 10431802     EISSN: None     Source Type: Journal    
DOI: 10.1021/bc060151c     Document Type: Article
Times cited : (18)

References (33)
  • 1
    • 0029166734 scopus 로고
    • Use of a stilbenedicarboxamide bridge in stabilizing, monitoring, and photochemically altering folded conformations of oligonucleotides
    • Letsinger, R. L., and Wu, T. F. (1995) Use of a stilbenedicarboxamide bridge in stabilizing, monitoring, and photochemically altering folded conformations of oligonucleotides. J. Am. Chem. Soc. 117, 7323-7328.
    • (1995) J. Am. Chem. Soc , vol.117 , pp. 7323-7328
    • Letsinger, R.L.1    Wu, T.F.2
  • 3
    • 0032576157 scopus 로고    scopus 로고
    • Perylene-and naphthalene-based linkers for duplex and triplex stabilization
    • Bevers, S., O'Dea, T. P., and McLaughlin, L. W. (1998) Perylene-and naphthalene-based linkers for duplex and triplex stabilization. J. Am. Chem. Soc. 120, 11004-11005.
    • (1998) J. Am. Chem. Soc , vol.120 , pp. 11004-11005
    • Bevers, S.1    O'Dea, T.P.2    McLaughlin, L.W.3
  • 4
    • 0037731551 scopus 로고    scopus 로고
    • Single-molecule detection of efflux pump machinery in Pseudomonas aeruginosa
    • (a) Xu, X. H. N., Brownlow, W., Huang, S., and Chen, J. (2003) Single-molecule detection of efflux pump machinery in Pseudomonas aeruginosa. Biochem. Biophys. Res. Commun. 305, 79-86.
    • (2003) Biochem. Biophys. Res. Commun , vol.305 , pp. 79-86
    • Xu, X.H.N.1    Brownlow, W.2    Huang, S.3    Chen, J.4
  • 6
    • 16444387588 scopus 로고    scopus 로고
    • Simultaneous AFM manipulation and fluorescence imaging of single DNA strands
    • Hards, A., Zhou, C. Q., Seitz, M., Brauchle, C., and Zumbusch, A. (2005) Simultaneous AFM manipulation and fluorescence imaging of single DNA strands. ChemPhysChem 6, 534-540.
    • (2005) ChemPhysChem , vol.6 , pp. 534-540
    • Hards, A.1    Zhou, C.Q.2    Seitz, M.3    Brauchle, C.4    Zumbusch, A.5
  • 7
    • 0036952550 scopus 로고    scopus 로고
    • Single-molecule imaging and spectroscopy using fluorescence and surface-enhanced Raman scattering
    • Ishikawa, M., Maruyama, Y., Ye, J. Y., and Futamata, M. (2002) Single-molecule imaging and spectroscopy using fluorescence and surface-enhanced Raman scattering. J. Biol. Phys. 28, 573-585.
    • (2002) J. Biol. Phys , vol.28 , pp. 573-585
    • Ishikawa, M.1    Maruyama, Y.2    Ye, J.Y.3    Futamata, M.4
  • 9
    • 0038293131 scopus 로고    scopus 로고
    • Alternating DNA and π-conjugated sequences. Thermophilic foldable polymers
    • Wang, W., Wan, W., Zhou, H.-H., Niu, S., and Li, A. D. Q. (2003) Alternating DNA and π-conjugated sequences. Thermophilic foldable polymers. J. Am. Chem. Soc. 125, 5248-5249.
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 5248-5249
    • Wang, W.1    Wan, W.2    Zhou, H.-H.3    Niu, S.4    Li, A.D.Q.5
  • 10
    • 23844457175 scopus 로고    scopus 로고
    • Foldamers with hybrid biological and synthetic sequences as selective DNA fluorescent probes
    • Wang, W., Wan, W., Stachiw, A., and Li, A. D. Q. (2005) Foldamers with hybrid biological and synthetic sequences as selective DNA fluorescent probes. Biochemistry 44, 10751-10756.
    • (2005) Biochemistry , vol.44 , pp. 10751-10756
    • Wang, W.1    Wan, W.2    Stachiw, A.3    Li, A.D.Q.4
  • 11
    • 4644368371 scopus 로고    scopus 로고
    • Genetically encoded FRET probe for PKC activity based on pleckstrin
    • Schleifenbaum, A., Stier, G., Gasch, A., Sattler, M., and Schultz, C. (2004) Genetically encoded FRET probe for PKC activity based on pleckstrin. J. Am. Chem. Soc. 126, 11786-11787.
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 11786-11787
    • Schleifenbaum, A.1    Stier, G.2    Gasch, A.3    Sattler, M.4    Schultz, C.5
  • 12
    • 2442448280 scopus 로고    scopus 로고
    • Unambiguous detection of target DNAs by excimer-monomer switching molecular beacons
    • Fujimoto, K., Shimizu, H., and Inouye, M. (2004) Unambiguous detection of target DNAs by excimer-monomer switching molecular beacons. J. Org. Chem. 69, 3271-3275.
    • (2004) J. Org. Chem , vol.69 , pp. 3271-3275
    • Fujimoto, K.1    Shimizu, H.2    Inouye, M.3
  • 13
    • 0041599812 scopus 로고    scopus 로고
    • Hybridization-based unquenching of DNA hairpins on Au surfaces: Prototypical "molecular beacon" biosensors
    • Du, H., Disney, M. D., Miller, B. L., and Krauss, T. D. (2003) Hybridization-based unquenching of DNA hairpins on Au surfaces: Prototypical "molecular beacon" biosensors. J. Am. Chem. Soc. 125, 4012-4013.
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 4012-4013
    • Du, H.1    Disney, M.D.2    Miller, B.L.3    Krauss, T.D.4
  • 14
    • 0001380278 scopus 로고    scopus 로고
    • Using molecular beacons to probe molecular interactions between lactate dehydrogenase and single-stranded DNA
    • Fang, X. H., Li, J. J., and Tan, W. H. (2000) Using molecular beacons to probe molecular interactions between lactate dehydrogenase and single-stranded DNA. Anal. Chem. 72, 3280-3285.
    • (2000) Anal. Chem , vol.72 , pp. 3280-3285
    • Fang, X.H.1    Li, J.J.2    Tan, W.H.3
  • 15
    • 0041561193 scopus 로고    scopus 로고
    • Spectroscopic features of dual fluorescence/luminescence resonance energy-transfer molecular beacons
    • Tsourkas, A., Behlke, M. A., Xu, Y., and Bao, G. (2003) Spectroscopic features of dual fluorescence/luminescence resonance energy-transfer molecular beacons. Anal. Chem. 75, 3697-3703.
    • (2003) Anal. Chem , vol.75 , pp. 3697-3703
    • Tsourkas, A.1    Behlke, M.A.2    Xu, Y.3    Bao, G.4
  • 16
    • 0035822670 scopus 로고    scopus 로고
    • A molecular beacon strategy for the thermodynamic characterization of triplex DNA: Triplex formation at the promoter region of cyclin D1
    • Antony, T., Thomas, T., Sigal, L. H., Shirahata, A., and Thomas, T. J. (2001) A molecular beacon strategy for the thermodynamic characterization of triplex DNA: Triplex formation at the promoter region of cyclin D1. Biochemistry 40, 9387-9395.
    • (2001) Biochemistry , vol.40 , pp. 9387-9395
    • Antony, T.1    Thomas, T.2    Sigal, L.H.3    Shirahata, A.4    Thomas, T.J.5
  • 18
  • 20
    • 0001456688 scopus 로고
    • Intramolecular cyclization of N,N-bis(oligooxyethylene)amines: A new synthesis of monoaza crown ethers
    • Maeda, H., Furuyoshi, S., Nakatsuji, Y., and Okahara, M. (1982) Intramolecular cyclization of N,N-bis(oligooxyethylene)amines: a new synthesis of monoaza crown ethers. Tetrahedron 38, 3359-3362.
    • (1982) Tetrahedron , vol.38 , pp. 3359-3362
    • Maeda, H.1    Furuyoshi, S.2    Nakatsuji, Y.3    Okahara, M.4
  • 21
    • 3342927533 scopus 로고    scopus 로고
    • Metal-ion sensing fluorophores with large two-photon absorption cross sections: Aza-crown ether substituted donor-acceptor-donor distyryl benzenes
    • Pond, S. J. K., Tsutsumi, O., Rumi, M., Kwon, O., Zojer, E., Brédas, J.-L., Marder, S. R., and Perry, J. W. (2004) Metal-ion sensing fluorophores with large two-photon absorption cross sections: Aza-crown ether substituted donor-acceptor-donor distyryl benzenes. J. Am. Chem. Soc. 126, 9291-9306.
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 9291-9306
    • Pond, S.J.K.1    Tsutsumi, O.2    Rumi, M.3    Kwon, O.4    Zojer, E.5    Brédas, J.-L.6    Marder, S.R.7    Perry, J.W.8
  • 22
    • 0037042280 scopus 로고    scopus 로고
    • Synthesis, characterization, and spectroscopy of 4,7,12,15-[2.2]paracyclophane containing donor and acceptor groups: Impact of substitution patterns on through-space charge transfer
    • Bartholomew, G. P., and Bazan, G. C. (2002) Synthesis, characterization, and spectroscopy of 4,7,12,15-[2.2]paracyclophane containing donor and acceptor groups: Impact of substitution patterns on through-space charge transfer. J. Am. Chem. Soc. 124, 5183-5196.
    • (2002) J. Am. Chem. Soc , vol.124 , pp. 5183-5196
    • Bartholomew, G.P.1    Bazan, G.C.2
  • 23
    • 0042184795 scopus 로고    scopus 로고
    • For TBDMS manipulation: Lombardo, L. (1984) Diisopropylethylamine: an effective catalyst for the introduction of the tert-butyldimethylsilyl group. Tetrahedron Lett. 25, 227-228.
    • For TBDMS manipulation: Lombardo, L. (1984) Diisopropylethylamine: an effective catalyst for the introduction of the tert-butyldimethylsilyl group. Tetrahedron Lett. 25, 227-228.
  • 24
    • 29644432244 scopus 로고
    • Protection of hydroxyl groups as tert-butyldimethylsilyl derivatives
    • Corey, E. J., and Venkateswarlu, A. (1972) Protection of hydroxyl groups as tert-butyldimethylsilyl derivatives. J. Am. Chem. Soc. 94, 6190-6191.
    • (1972) J. Am. Chem. Soc , vol.94 , pp. 6190-6191
    • Corey, E.J.1    Venkateswarlu, A.2
  • 25
    • 38249027192 scopus 로고
    • Higher-carbon sugars. Part 10. The synthesis and osmylation of 7,8-dideoxy-1,2:3,4-di-O-isopropylidene-b-L-glycero-D-galacto-oct-7-enopyranose and related studies
    • For ion replacement
    • For ion replacement: Brimacombe, J. S., and Kabir, A. K. M. S. (1988) Higher-carbon sugars. Part 10. The synthesis and osmylation of 7,8-dideoxy-1,2:3,4-di-O-isopropylidene-b-L-glycero-D-galacto-oct-7-enopyranose and related studies. Carbohydr. Res. 174, 37-45.
    • (1988) Carbohydr. Res , vol.174 , pp. 37-45
    • Brimacombe, J.S.1    Kabir, A.K.M.S.2
  • 26
    • 0026139474 scopus 로고
    • Crystallographic interpretation of the topochemical behavior of alkyl alpha-cyano-4-[2-(4-pyridyl)ethenyl]-cinnamates in the crystalline state-enhancement of photopolymerizability by complex-formation
    • For condensation
    • For condensation: Maekawa, Y., Kato, S., Saigo, K., Hasegawa, M., and Ohashi, Y. (1991) Crystallographic interpretation of the topochemical behavior of alkyl alpha-cyano-4-[2-(4-pyridyl)ethenyl]-cinnamates in the crystalline state-enhancement of photopolymerizability by complex-formation. Macromolecules 24, 2314-2322.
    • (1991) Macromolecules , vol.24 , pp. 2314-2322
    • Maekawa, Y.1    Kato, S.2    Saigo, K.3    Hasegawa, M.4    Ohashi, Y.5
  • 28
    • 0033576981 scopus 로고    scopus 로고
    • A selective receptor for arginine derivatives in aqueous media. Energetic consequences of salt bridges that are highly exposed to water
    • Ngola, S. M., Kearney, P. C., Mecozzi, S., Russell, K., and Dougherty, D. A. (1999) A selective receptor for arginine derivatives in aqueous media. Energetic consequences of salt bridges that are highly exposed to water. J. Am. Chem. Soc. 121, 1192-1201.
    • (1999) J. Am. Chem. Soc , vol.121 , pp. 1192-1201
    • Ngola, S.M.1    Kearney, P.C.2    Mecozzi, S.3    Russell, K.4    Dougherty, D.A.5
  • 29
    • 0030778512 scopus 로고    scopus 로고
    • Detritylation of mono- and di-saccharide derivatives using ferric chloride hydrate
    • Ding, X. L., Wang, W., and Kong, F. Z. (1998) Detritylation of mono- and di-saccharide derivatives using ferric chloride hydrate. Carbohydr. Res. 303, 445-448.
    • (1998) Carbohydr. Res , vol.303 , pp. 445-448
    • Ding, X.L.1    Wang, W.2    Kong, F.Z.3
  • 32
    • 0037458901 scopus 로고    scopus 로고
    • Novel synthesis of protected thiol end-capped stilbenes and oligo(phenylenevinylene)s (OPVs)
    • Stuhr-Hansen, N., Christensen, J. B., Harrit, N., and Bjrnholm, T. (2003) Novel synthesis of protected thiol end-capped stilbenes and oligo(phenylenevinylene)s (OPVs). J. Org. Chem. 68, 1275-1282.
    • (2003) J. Org. Chem , vol.68 , pp. 1275-1282
    • Stuhr-Hansen, N.1    Christensen, J.B.2    Harrit, N.3    Bjrnholm, T.4
  • 33
    • 17144467623 scopus 로고    scopus 로고
    • Crown ether substituted 1,4-distyrylbenzene and their complexation with alkali picrates
    • Schwöppe, D., and Meier, H. (2000) Crown ether substituted 1,4-distyrylbenzene and their complexation with alkali picrates. J. Prakt. Chem. 342 (5), 459-464.
    • (2000) J. Prakt. Chem , vol.342 , Issue.5 , pp. 459-464
    • Schwöppe, D.1    Meier, H.2


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