The DinG protein from Escherichia coli is a structure-specific helicase

Journal of Biological Chemistry

Volumn 282, Issue 25, 2007, Pages 18437-18447

  Voloshin, Oleg N ^a   Camerini Otero, R Daniel ^a,b  

^a NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

^b Genetics and Biochemistry Branch   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA REPAIR; HELICASE; HOMOLOGOUS RECOMBINATION; PLASMID;

DNA SEQUENCES; ENZYME KINETICS; ESCHERICHIA COLI; MOLECULAR STRUCTURE; NUCLEOTIDES;

PROTEINS;

BACTERIAL PROTEIN; CHECKPOINT KINASE RAD3; DING PROTEIN; DNA; DOUBLE STRANDED DNA; HELICASE; RECA PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; DNA DAMAGE; DNA RECOMBINATION; DNA REPAIR; DNA REPLICATION; ENZYME ACTIVITY; PRIORITY JOURNAL; PROTEIN STRUCTURE; SACCHAROMYCES CEREVISIAE;

BASE SEQUENCE; BIOSENSING TECHNIQUES; DNA; DNA DAMAGE; DNA REPAIR; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; OLIGONUCLEOTIDES; PHOSPHORYLATION; PLASMIDS; RECOMBINATION, GENETIC; SUBSTRATE SPECIFICITY; SURFACE PLASMON RESONANCE;

ESCHERICHIA COLI; SACCHAROMYCES CEREVISIAE;

EID: 34547133987     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M700376200     Document Type: Article

References (69)

1. Lewis, L. K., and Mount, D. W. (1992) J. Bacteriol. 174, 5110-5116
2. Lewis, L. K., Jenkins, M. E., and Mount, D. W. (1992) J. Bacteriol. 174, 3377-3385
3. Van Dyk, T. K., DeRose, E. J., and Gonye, G. E. (2001) J. Bacteriol. 183, 5496-5505
4. Fernandez de Henestrosa, A. R., Ogi, T., Aoyagi, S., Chafin, D., Hayes, J. J., Ohmori, H., and Woodgate, R. (2000) Mol. Microbiol. 35, 1560-1572
5. Khil, P. P., and Camerini-Otero, R. D. (2002) Mol. Microbiol. 44, 89-105
6. Koonin, E. V. (1993) Nucleic Acids Res. 21, 1497
7. Voloshin, O. N., Vanevski, F., Khil, P. P., and Camerini-Otero, R. D. (2003) J. Biol. Chem. 278, 28284-28293
8. Cantor, S., Drapkin, R., Zhang, F., Lin, Y., Han, J., Pamidi, S., and Livingston, D. M. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 2357-2362
9. Cantor, S. B., Bell, D. W., Ganesan, S., Kass, E. M., Drapkin, R., Grossman, S., Wahrer, D. C., Sgroi, D. C., Lane, W. S., Haber, D. A., and Livingston, D. M. (2001) Cell 105, 149-160
10. Gupta, R., Sharma, S., Sommers, J. A., Jin, Z., Cantor, S. B., and Brosh, R. M., Jr. (2005) J. Biol. Chem. 280, 25450-25460
11. Sung, P., Bailly, V., Weber, C., Thompson, L. H., Prakash, L., and Prakash, S. (1993) Nature 365, 852-855
12. Berneburg, M., and Lehmann, A. R. (2001) Adv. Genet. 43, 71-102
13. de Boer, J., and Hoeijmakers, J. H. (2000) Carcinogenesis 21, 453-460
14. Litman, R., Peng, M., Jin, Z., Zhang, F., Zhang, J., Powell, S., Andreassen, P. R., and Cantor, S. B. (2005) Cancer Cell 8, 255-265
15. Voloshin, O. N., Wang, L., and Camerini-Otero, R. D. (2000) J. Mol. Biol. 303, 709-720
16. Masson, J. Y., Davies, A. A., Hajibagheri, N., Van Dyck, E., Benson, F. E., Stasiak, A. Z., Stasiak, A., and West, S. C. (1999) EMBO J. 18, 6552-6560
17. Bailly, V., Sung, P., Prakash, L., and Prakash, S. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 9712-9716
18. Warfield, K. L., Panchal, R. G., Aman, M. J., and Bavari, S. (2006) Curr. Opin. Mol. Ther. 8, 93-103
19. Inoue, H., Hayase, Y., Imura, A., Iwai, S., Miura, K., and Ohtsuka, E. (1987) Nucleic Acids Res. 15, 6131-6148
20. Lesnik, E. A., Guinosso, C. J., Kawasaki, A. M., Sasmor, H., Zounes, M., Cummins, L. L., Ecker, D. J., Cook, P. D., and Freier, S. M. (1993) Biochemistry 32, 7832-7838
21. Lubini, P., Zurcher, W., and Egli, M. (1994) Chem. Biol. 1, 39-45
22. Cummins, L. L., Owens, S. R., Risen, L. M., Lesnik, E. A., Freier, S. M., McGee, D., Guinosso, C. J., and Cook, P. D. (1995) Nucleic Acids Res. 23, 2019-2024
23. Anand, S. P., and Khan, S. A. (2004) Nucleic Acids Res. 32, 3190-3197
24. McGlynn, P., Al-Deib, A. A., Liu, J., Marians, K. J., and Lloyd, R. G. (1997) J. Mol. Biol. 270, 212-221
25. Panyutin, I. G., and Hsieh, P. (1993) J. Mol. Biol. 230, 413-424
26. Panyutin, I. G., and Hsieh, P. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 2021-2025
27. McGlynn, P., and Lloyd, R. G. (1999) Nucleic Acids Res. 27, 3049-3056
28. McGlynn, P., Mahdi, A. A., and Lloyd, R. G. (2000) Nucleic Acids Res. 28, 2324-2332
29. Whitby, M. C., Vincent, S. D., and Lloyd, R. G. (1994) EMBO J. 13, 5220-5228
30. Hishida, T., Han, Y. W., Shibata, T., Kubota, Y., Ishino, Y., Iwasaki, H., and Shinagawa, H. (2004) Genes Dev. 18, 1886-1897
31. West, S. C. (1997) Annu. Rev. Genet. 31, 213-244
32. Courcelle, J., Khodursky, A., Peter, B., Brown, P. O., and Hanawalt, P. C. (2001) Genetics 158, 41-64
33. Lewis, K. (2000) Microbiol. Mol. Biol. Rev. 64, 503-514
34. Weiss, D. S. (2004) Mol. Microbiol. 54, 588-597
35. Nakayama, H., Nakayama, K., Nakayama, R., Irino, N., Nakayama, Y., and Hanawalt, P. C. (1984) Mol. Gen. Genet. 195, 474-480
36. Nakayama, K., Irino, N., and Nakayama, H. (1985) Mol. Gen. Genet. 200, 266-271
37. Carles-Kinch, K., George, J. W., and Kreuzer, K. N. (1997) EMBO J. 16, 4142-4151
38. Baran, N., Pucshansky, L., Marco, Y., Benjamin, S., and Manor, H. (1997) Nucleic Acids Res. 25, 297-303
39. Kopel, V., Pozner, A., Baran, N., and Manor, H. (1996) Nucleic Acids Res. 24, 330-335
40. Harmon, F. G., and Kowalczykowski, S. C. (1998) Genes Dev. 12, 1134-1144
41. Jones, J. M., and Nakai, H. (2001) J. Mol. Biol. 312, 935-947
42. Cadman, C. J., Matson, S. W., and McGlynn, P. (2006) J. Mol. Biol. 362, 18-25
43. Fujikane, R., Shinagawa, H., and Ishino, Y. (2006) Genes Cells 11, 99-110
44. Sun, H., Bennett, R. J., and Maizels, N. (1999) Nucleic Acids Res. 27, 1978-1984
45. Huber, M. D., Lee, D. C., and Maizels, N. (2002) Nucleic Acids Res. 30, 3954-3961
46. Kuusk, S., Sedman, T., Joers, P., and Sedman, J. (2005) J. Biol. Chem. 280, 24322-24329
47. Ozsoy, A. Z., Ragonese, H. M., and Matson, S. W. (2003) Nucleic Acids Res. 31, 1554-1564
48. Kanagaraj, R., Saydam, N., Garcia, P. L., Zheng, L., and Janscak, P. (2006) Nucleic Acids Res. 34, 5217-5231
49. van Brabant, A. J., Ye, T., Sanz, M., German, I. J., Ellis, N. A., and Holloman, W. K. (2000) Biochemistry 39, 14617-14625
50. Mohaghegh, P., Karow, J. K., Brosh, R. M., Jr., Bohr, V. A., and Hickson, I. D. (2001) Nucleic Acids Res. 29, 2843-2849
51. Brosh, R. M., Jr., Waheed, J., and Sommers, J. A. (2002) J. Biol. Chem. 277, 23236-23245
52. Singleton, M. R., Scaife, S., and Wigley, D. B. (2001) Cell 107, 79-89
53. Sharma, S., Otterlei, M., Sommers, J. A., Driscoll, H. C., Dianov, G. L., Kao, H. I., Bambara, R. A., and Brosh, R. M., Jr. (2004) Mol. Biol. Cell 15, 734-750
54. Pichierri, P., Franchitto, A., and Rosselli, F. (2004)EMBOJ. 23, 3154-3163
55. Ralf, C., Hickson, I. D., and Wu, L. (2006) J. Biol. Chem. 281, 22839-22846
56. Bartos, J. D., Wang, W., Pike, J. E., and Bambara, R. A. (2006) J. Biol. Chem. 281, 32227-32239
57. van Brabant, A. J., Stan, R., and Ellis, N. A. (2000) Annu. Rev. Genomics Hum. Genet. 1, 409-459
58. Sandler, S. J., and Marians, K. J. (2000) J. Bacteriol. 182, 9-13
59. Cox, M. M. (2002) Mutat. Res. 510, 107-120
60. Lusetti, S. L., and Cox, M. M. (2002) Annu. Rev. Biochem. 71, 71-100
61. Courcelle, J., and Hanawalt, P. C. (2003) Annu. Rev. Genet. 37, 611-646
62. Michel, B., Grompone, G., Flores, M. J., and Bidnenko, V. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 12783-12788
63. Wu, L., and Hickson, I. D. (2006) Annu. Rev. Genet. 40, 279-306
64. Flores, M. J., Bidnenko, V., and Michel, B. (2004) EMBO Rep. 5, 983-988
65. Higgins, N. P., Kato, K., and Strauss, B. (1976) J. Mol. Biol. 101, 417-425
66. Baharoglu, Z., Petranovic, M., Flores, M. J., and Michel, B. (2006) EMBO J. 25, 596-604
67. Grompone, G., Seigneur, M., Ehrlich, S. D., and Michel, B. (2002) Mol. Microbiol. 44, 1331-1339
68. Rudolf, J., Makrantoni, V., Ingledew, W. J., Stark, M. J., and White, M. F. (2006) Mol. Cell 23, 801-808
69. Lukianova, O. A., and David, S. S. (2005) Curr. Opin. Chem. Biol. 9, 145-151