-
1
-
-
0017298367
-
Overlapping genes in bacteriophage phiX174
-
10.1038/264034a0 1004533
-
Barrell BG Air GM Hutchison CA 3rd Overlapping genes in bacteriophage phiX174 Nature 1976 264 5581 34-41 10.1038/264034a0 1004533
-
(1976)
Nature
, vol.264
, Issue.5581
, pp. 34-41
-
-
Barrell, B.G.1
Air, G.M.2
Hutchison III, C.A.3
-
2
-
-
0019547284
-
Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA
-
319142 6165011 10.1073/pnas.78.3.1421
-
Tomizawa J Itoh T Selzer G Som T Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA Proc Natl Acad Sci U S A 1981 78 3 1421-1425 319142 6165011 10.1073/pnas.78.3.1421
-
(1981)
Proc Natl Acad Sci U S A
, vol.78
, Issue.3
, pp. 1421-1425
-
-
Tomizawa, J.1
Itoh, T.2
Selzer, G.3
Som, T.4
-
3
-
-
0022471663
-
A mouse locus at which transcription from both DNA strands produces mRNAs complementary at their 3′ ends
-
10.1038/322275a0 2874494
-
Williams T Fried M A mouse locus at which transcription from both DNA strands produces mRNAs complementary at their 3′ ends Nature 1986 322 6076 275-279 10.1038/322275a0 2874494
-
(1986)
Nature
, vol.322
, Issue.6076
, pp. 275-279
-
-
Williams, T.1
Fried, M.2
-
4
-
-
33751536642
-
Genome-wide natural antisense transcription: Coupling its regulation to its different regulatory mechanisms
-
10.1038/sj.embor.7400857 17139297
-
Lapidot M Pilpel Y Genome-wide natural antisense transcription: Coupling its regulation to its different regulatory mechanisms EMBO Rep 2006 7 12 1216-1222 10.1038/sj.embor.7400857 17139297
-
(2006)
EMBO Rep
, vol.7
, Issue.12
, pp. 1216-1222
-
-
Lapidot, M.1
Pilpel, Y.2
-
6
-
-
25444458283
-
Evidence for abundant transcription of non-coding regions in the Saccharomyces cerevisiae genome
-
1181813 15960846 10.1186/1471-2164-6-93
-
Havilio M Levanon EY Lerman G Kupiec M Eisenberg E Evidence for abundant transcription of non-coding regions in the Saccharomyces cerevisiae genome BMC Genomics 2005 6 1 93 1181813 15960846 10.1186/1471-2164-6-93
-
(2005)
BMC Genomics
, vol.6
, Issue.1
, pp. 93
-
-
Havilio, M.1
Levanon, E.Y.2
Lerman, G.3
Kupiec, M.4
Eisenberg, E.5
-
7
-
-
24644488895
-
Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation
-
1175971 15960803 10.1186/gb-2005-6-6-r51
-
Jen CH Michalopoulos I Westhead DR Meyer P Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation Genome Biol 2005 6 6 R51 1175971 15960803 10.1186/gb-2005-6-6-r51
-
(2005)
Genome Biol
, vol.6
, Issue.6
-
-
Jen, C.H.1
Michalopoulos, I.2
Westhead, D.R.3
Meyer, P.4
-
8
-
-
1442329649
-
Antisense transcripts with rice full-length cDNAs
-
395737 14709177 10.1186/gb-2003-5-1-r5
-
Osato N Yamada H Satoh K Ooka H Yamamoto M Suzuki K Kawai J Carninci P Ohtomo Y Murakami K Matsubara K Kikuchi S Hayashizaki Y Antisense transcripts with rice full-length cDNAs Genome Biol 2003 5 1 R5 395737 14709177 10.1186/gb-2003-5-1-r5
-
(2003)
Genome Biol
, vol.5
, Issue.1
-
-
Osato, N.1
Yamada, H.2
Satoh, K.3
Ooka, H.4
Yamamoto, M.5
Suzuki, K.6
Kawai, J.7
Carninci, P.8
Ohtomo, Y.9
Murakami, K.10
Matsubara, K.11
Kikuchi, S.12
Hayashizaki, Y.13
-
9
-
-
0037673656
-
Antisense transcripts with FANTOM2 clone set and their implications for gene regulation
-
403655 12819130 10.1101/gr.982903
-
Kiyosawa H Yamanaka I Osato N Kondo S Hayashizaki Y Antisense transcripts with FANTOM2 clone set and their implications for gene regulation Genome Res 2003 13 6B 1324-1334 403655 12819130 10.1101/ gr.982903
-
(2003)
Genome Res
, vol.13
, Issue.6 B
, pp. 1324-1334
-
-
Kiyosawa, H.1
Yamanaka, I.2
Osato, N.3
Kondo, S.4
Hayashizaki, Y.5
-
10
-
-
0142104045
-
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
-
10.1038/nature01266 12466851
-
Okazaki Y Furuno M Kasukawa T Adachi J Bono H Kondo S Nikaido I Osato N Saito R Suzuki H Yamanaka I Kiyosawa H Yagi K Tomaru Y Hasegawa Y Nogami A Schonbach C Gojobori T Baldarelli R Hill DP Bult C Hume DA Quackenbush J Schriml LM Kanapin A Matsuda H Batalov S Beisel KW Blake JA Bradt D Brusic V Chothia C Corbani LE Cousins S Dalla E Dragani TA Fletcher CF Forrest A Frazer KS Gaasterland T Gariboldi M Gissi C Godzik A Gough J Grimmond S Gustincich S Hirokawa N Jackson IJ Jarvis ED Kanai A Kawaji H Kawasawa Y Kedzierski RM King BL Konagaya A Kurochkin IV Lee Y Lenhard B Lyons PA Maglott DR Maltais L Marchionni L McKenzie L Miki H Nagashima T Numata K Okido T Pavan WJ Pertea G Pesole G Petrovsky N Pillai R Pontius JU Qi D Ramachandran S Ravasi T Reed JC Reed DJ Reid J Ring BZ Ringwald M Sandelin A Schneider C Semple CA Setou M Shimada K Sultana R Takenaka Y Taylor MS Teasdale RD Tomita M Verardo R Wagner L Wahlestedt C Wang Y Watanabe Y Wells C Wilming LG Wynshaw-Boris A et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Nature 2002 420 6915 563-573 10.1038/nature01266 12466851
-
(2002)
Nature
, vol.420
, Issue.6915
, pp. 563-573
-
-
Okazaki, Y.1
Furuno, M.2
Kasukawa, T.3
Adachi, J.4
Bono, H.5
Kondo, S.6
Nikaido, I.7
Osato, N.8
Saito, R.9
Suzuki, H.10
Yamanaka, I.11
Kiyosawa, H.12
Yagi, K.13
Tomaru, Y.14
Hasegawa, Y.15
Nogami, A.16
Schonbach, C.17
Gojobori, T.18
Baldarelli, R.19
Hill, D.P.20
Bult, C.21
Hume, D.A.22
Quackenbush, J.23
Schriml, L.M.24
Kanapin, A.25
Matsuda, H.26
Batalov, S.27
Beisel, K.W.28
Blake, J.A.29
Bradt, D.30
Brusic, V.31
Chothia, C.32
Corbani, L.E.33
Cousins, S.34
Dalla, E.35
Dragani, T.A.36
Fletcher, C.F.37
Forrest, A.38
Frazer, K.S.39
Gaasterland, T.40
Gariboldi, M.41
Gissi, C.42
Godzik, A.43
Gough, J.44
Grimmond, S.45
Gustincich, S.46
Hirokawa, N.47
Jackson, I.J.48
Jarvis, E.D.49
Kanai, A.50
Kawaji, H.51
Kawasawa, Y.52
Kedzierski, R.M.53
King, B.L.54
Konagaya, A.55
Kurochkin, I.V.56
Lee, Y.57
Lenhard, B.58
Lyons, P.A.59
Maglott, D.R.60
Maltais, L.61
Marchionni, L.62
McKenzie, L.63
Miki, H.64
Nagashima, T.65
Numata, K.66
Okido, T.67
Pavan, W.J.68
Pertea, G.69
Pesole, G.70
Petrovsky, N.71
Pillai, R.72
Pontius, J.U.73
Qi, D.74
Ramachandran, S.75
Ravasi, T.76
Reed, J.C.77
Reed, D.J.78
Reid, J.79
Ring, B.Z.80
Ringwald, M.81
Sandelin, A.82
Schneider, C.83
Semple, C.A.84
Setou, M.85
Shimada, K.86
Sultana, R.87
Takenaka, Y.88
Taylor, M.S.89
Teasdale, R.D.90
Tomita, M.91
Verardo, R.92
Wagner, L.93
Wahlestedt, C.94
Wang, Y.95
Watanabe, Y.96
Wells, C.97
Wilming, L.G.98
Wynshaw-Boris, A.99
more..
-
11
-
-
0037158780
-
Computational discovery of sense-antisense transcription in the human and mouse genomes
-
RESEARCH0044 126869 12225583 10.1186/gb-2002-3-9-research0044
-
Shendure J Church GM Computational discovery of sense-antisense transcription in the human and mouse genomes Genome Biol 2002 3 9 RESEARCH0044 126869 12225583 10.1186/gb-2002-3-9-research0044
-
(2002)
Genome Biol
, vol.3
, Issue.9
-
-
Shendure, J.1
Church, G.M.2
-
12
-
-
12244275645
-
Widespread occurrence of antisense transcription in the human genome
-
10.1038/nbt808 12640466
-
Yelin R Dahary D Sorek R Levanon EY Goldstein O Shoshan A Diber A Biton S Tamir Y Khosravi R Nemzer S Pinner E Walach S Bernstein J Savitsky K Rotman G Widespread occurrence of antisense transcription in the human genome Nat Biotechnol 2003 21 4 379-386 10.1038/nbt808 12640466
-
(2003)
Nat Biotechnol
, vol.21
, Issue.4
, pp. 379-386
-
-
Yelin, R.1
Dahary, D.2
Sorek, R.3
Levanon, E.Y.4
Goldstein, O.5
Shoshan, A.6
Diber, A.7
Biton, S.8
Tamir, Y.9
Khosravi, R.10
Nemzer, S.11
Pinner, E.12
Walach, S.13
Bernstein, J.14
Savitsky, K.15
Rotman, G.16
-
13
-
-
4444376317
-
Over 20% of human transcripts might form sense-antisense pairs
-
519112 15356298 10.1093/nar/gkh818
-
Chen J Sun M Kent WJ Huang X Xie H Wang W Zhou G Shi RZ Rowley JD Over 20% of human transcripts might form sense-antisense pairs Nucleic Acids Res 2004 32 16 4812-4820 519112 15356298 10.1093/nar/gkh818
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.16
, pp. 4812-4820
-
-
Chen, J.1
Sun, M.2
Kent, W.J.3
Huang, X.4
Xie, H.5
Wang, W.6
Zhou, G.7
Shi, R.Z.8
Rowley, J.D.9
-
14
-
-
33745607884
-
Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcriptionand organismic complexity
-
1484459 16769979 10.1101/gr.5210006
-
Sun M Hurst LD Carmichael GG Chen J Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcriptionand organismic complexity Genome Res 2006 16 7 922-933 1484459 16769979 10.1101/gr.5210006
-
(2006)
Genome Res
, vol.16
, Issue.7
, pp. 922-933
-
-
Sun, M.1
Hurst, L.D.2
Carmichael, G.G.3
Chen, J.4
-
15
-
-
12144287461
-
Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22
-
353210 14993201 10.1101/gr.2094104
-
Kampa D Cheng J Kapranov P Yamanaka M Brubaker S Cawley S Drenkow J Piccolboni A Bekiranov S Helt G Tammana H Gingeras TR Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 Genome Res 2004 14 3 331-342 353210 14993201 10.1101/gr.2094104
-
(2004)
Genome Res
, vol.14
, Issue.3
, pp. 331-342
-
-
Kampa, D.1
Cheng, J.2
Kapranov, P.3
Yamanaka, M.4
Brubaker, S.5
Cawley, S.6
Drenkow, J.7
Piccolboni, A.8
Bekiranov, S.9
Helt, G.10
Tammana, H.11
Gingeras, T.R.12
-
16
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
10.1126/science.1112009 16141073
-
Katayama S Tomaru Y Kasukawa T Waki K Nakanishi M Nakamura M Nishida H Yap CC Suzuki M Kawai J Suzuki H Carninci P Hayashizaki Y Wells C Frith M Ravasi T Pang KC Hallinan J Mattick J Hume DA Lipovich L Batalov S Engstrom PG Mizuno Y Faghihi MA Sandelin A Chalk AM Mottagui-Tabar S Liang Z Lenhard B Wahlestedt C Antisense transcription in the mammalian transcriptome Science 2005 309 5740 1564-1566 10.1126/science.1112009 16141073
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
Waki, K.4
Nakanishi, M.5
Nakamura, M.6
Nishida, H.7
Yap, C.C.8
Suzuki, M.9
Kawai, J.10
Suzuki, H.11
Carninci, P.12
Hayashizaki, Y.13
Wells, C.14
Frith, M.15
Ravasi, T.16
Pang, K.C.17
Hallinan, J.18
Mattick, J.19
Hume, D.A.20
Lipovich, L.21
Batalov, S.22
Engstrom, P.G.23
Mizuno, Y.24
Faghihi, M.A.25
Sandelin, A.26
Chalk, A.M.27
Mottagui-Tabar, S.28
Liang, Z.29
Lenhard, B.30
Wahlestedt, C.31
more..
-
17
-
-
25444523778
-
Natural antisense transcripts
-
17132938
-
Werner A Natural antisense transcripts RNA Biol 2005 2 2 53-62 17132938
-
(2005)
RNA Biol
, vol.2
, Issue.2
, pp. 53-62
-
-
Werner, A.1
-
18
-
-
33646782348
-
Non-coding RNA
-
Spec No 1 10.1093/hmg/ddl046 16651366 Spec No 1
-
Mattick JS Makunin IV Non-coding RNA Hum Mol Genet 2006 15 Spec No 1 R17-29 10.1093/hmg/ddl046 16651366
-
(2006)
Hum Mol Genet
, vol.15
-
-
Mattick, J.S.1
Makunin, I.V.2
-
19
-
-
29244490062
-
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
-
10.1016/j.cell.2005.11.035 16377568
-
Borsani O Zhu J Verslues PE Sunkar R Zhu JK Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis Cell 2005 123 7 1279-1291 10.1016/j.cell.2005.11.035 16377568
-
(2005)
Cell
, vol.123
, Issue.7
, pp. 1279-1291
-
-
Borsani, O.1
Zhu, J.2
Verslues, P.E.3
Sunkar, R.4
Zhu, J.K.5
-
20
-
-
24644443227
-
The functional genomics of noncoding RNA
-
10.1126/science.1117806 16141063
-
Mattick JS The functional genomics of noncoding RNA Science 2005 309 5740 1527-1528 10.1126/science.1117806 16141063
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1527-1528
-
-
Mattick, J.S.1
-
21
-
-
24644481406
-
A strategy for probing the function of noncoding RNAs finds a repressor of NFAT
-
1573 10.1126/science.1115901 16141075
-
Willingham AT Orth AP Batalov S Peters EC Wen BG Aza-Blanc P Hogenesch JB Schultz PG A strategy for probing the function of noncoding RNAs finds a repressor of NFAT Science 2005 309 5740-1570 1573 10.1126/ science.1115901 16141075
-
(2005)
Science
, vol.309
, pp. 1570-1573
-
-
Willingham, A.T.1
Orth, A.P.2
Batalov, S.3
Peters, E.C.4
Wen, B.G.5
Aza-Blanc, P.6
Hogenesch, J.B.7
Schultz, P.G.8
-
22
-
-
19944376457
-
Global identification of human transcribed sequences with genome tiling arrays
-
10.1126/science.1103388 15539566
-
Bertone P Stolc V Royce TE Rozowsky JS Urban AE Zhu X Rinn JL Tongprasit W Samanta M Weissman S Gerstein M Snyder M Global identification of human transcribed sequences with genome tiling arrays Science 2004 306 5705 2242-2246 10.1126/science.1103388 15539566
-
(2004)
Science
, vol.306
, Issue.5705
, pp. 2242-2246
-
-
Bertone, P.1
Stolc, V.2
Royce, T.E.3
Rozowsky, J.S.4
Urban, A.E.5
Zhu, X.6
Rinn, J.L.7
Tongprasit, W.8
Samanta, M.9
Weissman, S.10
Gerstein, M.11
Snyder, M.12
-
23
-
-
21044431735
-
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
-
10.1126/science.1108625 15790807
-
Cheng J Kapranov P Drenkow J Dike S Brubaker S Patel S Long J Stern D Tammana H Helt G Sementchenko V Piccolboni A Bekiranov S Bailey DK Ganesh M Ghosh S Bell I Gerhard DS Gingeras TR Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution Science 2005 308 5725 1149-1154 10.1126/science.1108625 15790807
-
(2005)
Science
, vol.308
, Issue.5725
, pp. 1149-1154
-
-
Cheng, J.1
Kapranov, P.2
Drenkow, J.3
Dike, S.4
Brubaker, S.5
Patel, S.6
Long, J.7
Stern, D.8
Tammana, H.9
Helt, G.10
Sementchenko, V.11
Piccolboni, A.12
Bekiranov, S.13
Bailey, D.K.14
Ganesh, M.15
Ghosh, S.16
Bell, I.17
Gerhard, D.S.18
Gingeras, T.R.19
-
24
-
-
34547100171
-
-
Affymetrix http://www.affymetrix.com
-
-
-
-
25
-
-
33846039019
-
Ensembl 2007
-
Database issue 1761443 17148474 10.1093/nar/gkl996
-
Hubbard TJ Aken BL Beal K Ballester B Caccamo M Chen Y Clarke L Coates G Cunningham F Cutts T Down T Dyer SC Fitzgerald S Fernandez-Banet J Graf S Haider S Hammond M Herrero J Holland R Howe K Howe K Johnson N Kahari A Keefe D Kokocinski F Kulesha E Lawson D Longden I Melsopp C Megy K Meidl P Ouverdin B Parker A Prlic A Rice S Rios D Schuster M Sealy I Severin J Slater G Smedley D Spudich G Trevanion S Vilella A Vogel J White S Wood M Cox T Curwen V Durbin R Fernandez-Suarez XM Flicek P Kasprzyk A Proctor G Searle S Smith J Ureta-Vidal A Birney E Ensembl 2007 Nucleic Acids Res 2007 35 Database issue D610-7 1761443 17148474 10.1093/nar/gkl996
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Hubbard, T.J.1
Aken, B.L.2
Beal, K.3
Ballester, B.4
Caccamo, M.5
Chen, Y.6
Clarke, L.7
Coates, G.8
Cunningham, F.9
Cutts, T.10
Down, T.11
Dyer, S.C.12
Fitzgerald, S.13
Fernandez-Banet, J.14
Graf, S.15
Haider, S.16
Hammond, M.17
Herrero, J.18
Holland, R.19
Howe, K.20
Howe, K.21
Johnson, N.22
Kahari, A.23
Keefe, D.24
Kokocinski, F.25
Kulesha, E.26
Lawson, D.27
Longden, I.28
Melsopp, C.29
Megy, K.30
Meidl, P.31
Ouverdin, B.32
Parker, A.33
Prlic, A.34
Rice, S.35
Rios, D.36
Schuster, M.37
Sealy, I.38
Severin, J.39
Slater, G.40
Smedley, D.41
Spudich, G.42
Trevanion, S.43
Vilella, A.44
Vogel, J.45
White, S.46
Wood, M.47
Cox, T.48
Curwen, V.49
Durbin, R.50
Fernandez-Suarez, X.M.51
Flicek, P.52
Kasprzyk, A.53
Proctor, G.54
Searle, S.55
Smith, J.56
Ureta-Vidal, A.57
Birney, E.58
more..
-
26
-
-
0036135549
-
A novel strand-specific RT-PCR for detection of hepatitis C virus negative-strand RNA (replicative intermediate): Evidence of absence or very low level of HCV replication in peripheral blood mononuclear cells
-
10.1016/S0166-0934(01)00399-8 11742656
-
Lin L Fevery J Hiem Yap S A novel strand-specific RT-PCR for detection of hepatitis C virus negative-strand RNA (replicative intermediate): evidence of absence or very low level of HCV replication in peripheral blood mononuclear cells J Virol Methods 2002 100 1-2 97-105 10.1016/ S0166-0934(01)00399-8 11742656
-
(2002)
J Virol Methods
, vol.100
, Issue.1-2
, pp. 97-105
-
-
Lin, L.1
Fevery, J.2
Hiem Yap, S.3
|