-
1
-
-
14844336304
-
Structural and biochemical evidence for an enzymatic quinone redox cycle in Escherichia coli: identification of a novel quinol monooxygenase
-
Adams M.A., and Jia Z. Structural and biochemical evidence for an enzymatic quinone redox cycle in Escherichia coli: identification of a novel quinol monooxygenase. J. Biol. Chem. 280 (2005) 8358-8363
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 8358-8363
-
-
Adams, M.A.1
Jia, Z.2
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
3
-
-
0346494941
-
SCOP database in 2004: refinements integrate structure and sequence family data
-
Andreeva A., Howorth D., Brenner S.E., Hubbard T.J., Chothia C., and Murzin A.G. SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res 32 (2004) D226-D229
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Andreeva, A.1
Howorth, D.2
Brenner, S.E.3
Hubbard, T.J.4
Chothia, C.5
Murzin, A.G.6
-
4
-
-
33645104904
-
Haloferax volcanii PitA: an example of functional interaction between the Pfam chlorite dismutase and antibiotic biosynthesis monooxygenase families?
-
Bab-Dinitz E., Shmuely H., Maupin-Furlow J., Eichler J., and Shaanan B. Haloferax volcanii PitA: an example of functional interaction between the Pfam chlorite dismutase and antibiotic biosynthesis monooxygenase families?. Bioinformatics 22 (2006) 671-675
-
(2006)
Bioinformatics
, vol.22
, pp. 671-675
-
-
Bab-Dinitz, E.1
Shmuely, H.2
Maupin-Furlow, J.3
Eichler, J.4
Shaanan, B.5
-
5
-
-
0032815529
-
Pentacoordinate hemin derivatives in sodium dodecyl sulfate micelles: model systems for the assignment of the fifth ligand in ferric heme proteins
-
Boffi A., Das T.K., della Longa S., Spagnuolo C., and Rousseau D.L. Pentacoordinate hemin derivatives in sodium dodecyl sulfate micelles: model systems for the assignment of the fifth ligand in ferric heme proteins. Biophys. J. 77 (1999) 1143-1149
-
(1999)
Biophys. J.
, vol.77
, pp. 1143-1149
-
-
Boffi, A.1
Das, T.K.2
della Longa, S.3
Spagnuolo, C.4
Rousseau, D.L.5
-
6
-
-
23844469133
-
A novel thermostable hemoglobin from the actinobacterium Thermobifida fusca
-
Bonamore A., Ilari A., Giangiacomo L., Bellelli A., Morea V., and Boffi A. A novel thermostable hemoglobin from the actinobacterium Thermobifida fusca. Febs. J. 272 (2005) 4189-4201
-
(2005)
Febs. J.
, vol.272
, pp. 4189-4201
-
-
Bonamore, A.1
Ilari, A.2
Giangiacomo, L.3
Bellelli, A.4
Morea, V.5
Boffi, A.6
-
7
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
Enright A.J., Iliopoulos I., Kyrpides N.C., and Ouzounis C.A. Protein interaction maps for complete genomes based on gene fusion events. Nature 402 (1999) 86-90
-
(1999)
Nature
, vol.402
, pp. 86-90
-
-
Enright, A.J.1
Iliopoulos, I.2
Kyrpides, N.C.3
Ouzounis, C.A.4
-
8
-
-
33644876020
-
Pfam: clans, web tools and services
-
Finn R.D., et al. Pfam: clans, web tools and services. Nucleic Acids Res 34 (2006) D247-D251
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Finn, R.D.1
-
9
-
-
0141761124
-
The diversity of globin-coupled sensors
-
Freitas T.A., Hou S., and Alam M. The diversity of globin-coupled sensors. FEBS. Lett. 552 (2003) 99-104
-
(2003)
FEBS. Lett.
, vol.552
, pp. 99-104
-
-
Freitas, T.A.1
Hou, S.2
Alam, M.3
-
10
-
-
2342526669
-
Ancestral hemoglobins in Archaea
-
Freitas T.A., et al. Ancestral hemoglobins in Archaea. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 6675-6680
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 6675-6680
-
-
Freitas, T.A.1
-
11
-
-
15744375834
-
The truncated oxygen-avid hemoglobin from Bacillus subtilis: X-ray structure and ligand binding properties
-
Giangiacomo L., Ilari A., Boffi A., Morea V., and Chiancone E. The truncated oxygen-avid hemoglobin from Bacillus subtilis: X-ray structure and ligand binding properties. J. Biol. Chem. 280 (2005) 9192-9202
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 9192-9202
-
-
Giangiacomo, L.1
Ilari, A.2
Boffi, A.3
Morea, V.4
Chiancone, E.5
-
12
-
-
33845699407
-
Crystal structure and ligand binding properties of the truncated hemoglobin from Geobacillus stearothermophilus
-
Ilari A., Kjelgaard P., Wachenfeldt C.V., Catacchio B., Chiancone E., and Boffi A. Crystal structure and ligand binding properties of the truncated hemoglobin from Geobacillus stearothermophilus. Arch. Biochem. Biophys. 457 (2007) 85-94
-
(2007)
Arch. Biochem. Biophys.
, vol.457
, pp. 85-94
-
-
Ilari, A.1
Kjelgaard, P.2
Wachenfeldt, C.V.3
Catacchio, B.4
Chiancone, E.5
Boffi, A.6
-
13
-
-
0030858888
-
Identification of a monooxygenase from Streptomyces coelicolor A3(2) involved in biosynthesis of actinorhodin: purification and characterization of the recombinant enzyme
-
Kendrew S.G., Hopwood D.A., and Marsh E.N. Identification of a monooxygenase from Streptomyces coelicolor A3(2) involved in biosynthesis of actinorhodin: purification and characterization of the recombinant enzyme. J. Bacteriol. 179 (1997) 4305-4310
-
(1997)
J. Bacteriol.
, vol.179
, pp. 4305-4310
-
-
Kendrew, S.G.1
Hopwood, D.A.2
Marsh, E.N.3
-
14
-
-
33644873706
-
The RCSB PDB information portal for structural genomics
-
Kouranov A., et al. The RCSB PDB information portal for structural genomics. Nucleic Acids Res. 34 (2006) D302-D305
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Kouranov, A.1
-
15
-
-
0038101540
-
Direct measurement of equilibrium constants for high-affinity hemoglobins
-
Kundu S., Premer S.A., Hoy J.A., Trent III J.T., and Hargrove M.S. Direct measurement of equilibrium constants for high-affinity hemoglobins. Biophys. J. 84 (2003) 3931-3940
-
(2003)
Biophys. J.
, vol.84
, pp. 3931-3940
-
-
Kundu, S.1
Premer, S.A.2
Hoy, J.A.3
Trent III, J.T.4
Hargrove, M.S.5
-
16
-
-
0002498995
-
Analytical ultracentrifugation in biochemistry and polymer science
-
Harding S.E.a.H., and J.C. (Eds), Cambridge, UK
-
Laue T.M., Shah D.B., Ridgeway T.M., and Pelletier S. Analytical ultracentrifugation in biochemistry and polymer science. In: Harding S.E.a.H., and J.C. (Eds). Royal Society of Chemistry (1992), Cambridge, UK 90-125
-
(1992)
Royal Society of Chemistry
, pp. 90-125
-
-
Laue, T.M.1
Shah, D.B.2
Ridgeway, T.M.3
Pelletier, S.4
-
17
-
-
33646488075
-
The crystal structure of Rv0793, a hypothetical monooxygenase from M. tuberculosis.
-
Lemieux M.J., Ference C., Cherney M.M., Wang M., Garen C., and James M.N. The crystal structure of Rv0793, a hypothetical monooxygenase from M. tuberculosis. J. Struct. Funct. Genomics 6 (2005) 245-257
-
(2005)
J. Struct. Funct. Genomics
, vol.6
, pp. 245-257
-
-
Lemieux, M.J.1
Ference, C.2
Cherney, M.M.3
Wang, M.4
Garen, C.5
James, M.N.6
-
18
-
-
33644877451
-
SMART 5: domains in the context of genomes and networks
-
Letunic I., Copley R.R., Pils B., Pinkert S., Schultz J., and Bork P. SMART 5: domains in the context of genomes and networks. Nucleic Acids Res. 34 (2006) D257-D260
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Letunic, I.1
Copley, R.R.2
Pils, B.3
Pinkert, S.4
Schultz, J.5
Bork, P.6
-
19
-
-
13444262384
-
CDD: a conserved domain database for protein classification
-
Marchler-Bauer A., et al. CDD: a conserved domain database for protein classification. Nucleic Acids Res. 33 (2005) D192-D196
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Marchler-Bauer, A.1
-
20
-
-
0033618555
-
Detecting protein function and protein-protein interactions from genome sequences
-
Marcotte E.M., Pellegrini M., Ng H.L., Rice D.W., Yeates T.O., and Eisenberg D. Detecting protein function and protein-protein interactions from genome sequences. Science 285 (1999) 751-753
-
(1999)
Science
, vol.285
, pp. 751-753
-
-
Marcotte, E.M.1
Pellegrini, M.2
Ng, H.L.3
Rice, D.W.4
Yeates, T.O.5
Eisenberg, D.6
-
21
-
-
0035423114
-
Mycobacterium tuberculosis hemoglobin N displays a protein tunnel suited for O2 diffusion to the heme
-
Milani M., Pesce A., Ouellet Y., Ascenzi P., Guertin M., and Bolognesi M. Mycobacterium tuberculosis hemoglobin N displays a protein tunnel suited for O2 diffusion to the heme. Embo J. 20 (2001) 3902-3909
-
(2001)
Embo J.
, vol.20
, pp. 3902-3909
-
-
Milani, M.1
Pesce, A.2
Ouellet, Y.3
Ascenzi, P.4
Guertin, M.5
Bolognesi, M.6
-
22
-
-
0346362067
-
Truncated hemoglobins and nitric oxide action
-
Milani M., Pesce A., Ouellet H., Guertin M., and Bolognesi M. Truncated hemoglobins and nitric oxide action. IUBMB Life 55 (2003) 623-627
-
(2003)
IUBMB Life
, vol.55
, pp. 623-627
-
-
Milani, M.1
Pesce, A.2
Ouellet, H.3
Guertin, M.4
Bolognesi, M.5
-
23
-
-
0038624089
-
A TyrCD1/TrpG8 hydrogen bond network and a TyrB10TyrCD1 covalent link shape the heme distal site of Mycobacterium tuberculosis hemoglobin O
-
Milani M., Savard P.Y., Ouellet H., Ascenzi P., Guertin M., and Bolognesi M. A TyrCD1/TrpG8 hydrogen bond network and a TyrB10TyrCD1 covalent link shape the heme distal site of Mycobacterium tuberculosis hemoglobin O. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 5766-5771
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 5766-5771
-
-
Milani, M.1
Savard, P.Y.2
Ouellet, H.3
Ascenzi, P.4
Guertin, M.5
Bolognesi, M.6
-
24
-
-
33846023357
-
Structural determinants in the Group III truncated hemoglobin from Campylobacter jejuni
-
Nardini M., et al. Structural determinants in the Group III truncated hemoglobin from Campylobacter jejuni. J. Biol. Chem. 281 (2006) 37803-37812
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 37803-37812
-
-
Nardini, M.1
-
25
-
-
0038629128
-
Reactions of Mycobacterium tuberculosis truncated hemoglobin O with ligands reveal a novel ligand-inclusive hydrogen bond network
-
Ouellet H., et al. Reactions of Mycobacterium tuberculosis truncated hemoglobin O with ligands reveal a novel ligand-inclusive hydrogen bond network. Biochemistry 42 (2003) 5764-5774
-
(2003)
Biochemistry
, vol.42
, pp. 5764-5774
-
-
Ouellet, H.1
-
26
-
-
0034213366
-
A novel two-over-two alpha-helical sandwich fold is characteristic of the truncated hemoglobin family
-
Pesce A., et al. A novel two-over-two alpha-helical sandwich fold is characteristic of the truncated hemoglobin family. Embo J. 19 (2000) 2424-2434
-
(2000)
Embo J.
, vol.19
, pp. 2424-2434
-
-
Pesce, A.1
-
27
-
-
24344467831
-
The X-ray crystal structure of PA3566 from Pseudomonas aeruginosa at 1.8 A resolution
-
Sanders D.A., Walker J.R., Skarina T., and Savchenko A. The X-ray crystal structure of PA3566 from Pseudomonas aeruginosa at 1.8 A resolution. Proteins 61 (2005) 209-212
-
(2005)
Proteins
, vol.61
, pp. 209-212
-
-
Sanders, D.A.1
Walker, J.R.2
Skarina, T.3
Savchenko, A.4
-
28
-
-
0037439266
-
The structure of ActVA-Orf6, a novel type of monooxygenase involved in actinorhodin biosynthesis
-
Sciara G., et al. The structure of ActVA-Orf6, a novel type of monooxygenase involved in actinorhodin biosynthesis. Embo J. 22 (2003) 205-215
-
(2003)
Embo J.
, vol.22
, pp. 205-215
-
-
Sciara, G.1
-
29
-
-
3843100441
-
Crystallographic analysis of Synechocystis cyanoglobin reveals the structural changes accompanying ligand binding in a hexacoordinate hemoglobin
-
Trent III J.T., Kundu S., Hoy J.A., and Hargrove M.S. Crystallographic analysis of Synechocystis cyanoglobin reveals the structural changes accompanying ligand binding in a hexacoordinate hemoglobin. J. Mol. Biol. 341 (2004) 1097-1108
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 1097-1108
-
-
Trent III, J.T.1
Kundu, S.2
Hoy, J.A.3
Hargrove, M.S.4
-
30
-
-
2442621506
-
Crystal structure of the conserved hypothetical protein TT1380 from Thermus thermophilus HB8
-
Wada T., et al. Crystal structure of the conserved hypothetical protein TT1380 from Thermus thermophilus HB8. Proteins 55 (2004) 778-780
-
(2004)
Proteins
, vol.55
, pp. 778-780
-
-
Wada, T.1
-
31
-
-
33846044585
-
The SUPERFAMILY database in 2007: families and functions
-
Wilson D., Madera M., Vogel C., Chothia C., and Gough J. The SUPERFAMILY database in 2007: families and functions. Nucleic Acids Res 35 (2007) D308-D313
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Wilson, D.1
Madera, M.2
Vogel, C.3
Chothia, C.4
Gough, J.5
-
32
-
-
0037059826
-
Truncated hemoglobins: a new family of hemoglobins widely distributed in bacteria, unicellular eukaryotes, and plants
-
Wittenberg J.B., Bolognesi M., Wittenberg B.A., and Guertin M. Truncated hemoglobins: a new family of hemoglobins widely distributed in bacteria, unicellular eukaryotes, and plants. J. Biol. Chem. 277 (2002) 871-874
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 871-874
-
-
Wittenberg, J.B.1
Bolognesi, M.2
Wittenberg, B.A.3
Guertin, M.4
-
34
-
-
13244296905
-
Staphylococcus aureus IsdG and IsdI, heme-degrading enzymes with structural similarity to monooxygenases
-
Wu R., et al. Staphylococcus aureus IsdG and IsdI, heme-degrading enzymes with structural similarity to monooxygenases. J. Biol. Chem. 280 (2005) 2840-2846
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 2840-2846
-
-
Wu, R.1
-
35
-
-
33644873213
-
The Universal Protein Resource (UniProt): an expanding universe of protein information
-
Wu C.H., et al. The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res. 34 (2006) D187-D191
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Wu, C.H.1
|