The distribution of genetic variation in Norway spruce (Picea abies Karst.) populations in the western Alps

Journal of Biogeography

Volumn 34, Issue 6, 2007, Pages 929-938

  Meloni, Marilena ^a   Perini, Davide ^a   Binelli, Giorgio ^a  

^a UNIVERSITY OF INSUBRIA   (Italy)

Author keywords

Conservation genetics; Genetic diversity; Glacial refugia; Maritime Alps; Microsatellites; Picea abies Karst; Re colonization

Indexed keywords

BAYESIAN ANALYSIS; CONIFEROUS TREE; CONSERVATION GENETICS; GENETIC DIFFERENTIATION; GENETIC ISOLATION; GENETIC MARKER; GENETIC VARIATION; GENOTYPE; GEOGRAPHICAL DISTRIBUTION; LAST GLACIATION; MOLECULAR ANALYSIS; PHYTOGEOGRAPHY; POPULATION DISTRIBUTION; POPULATION ESTIMATION; RECOLONIZATION; REFUGE; RELICT COMMUNITY; SURVIVAL;

ALPS; EURASIA; EUROPE; MARITIME ALPS; WESTERN ALPS;

PICEA ABIES;

EID: 34447519213     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2006.01668.x     Document Type: Article

References (56)

1. Achèrè, V., Faivre-Rampant, P., Jeandroz, S., Besnard, G., Markussen, T., Aragones, A., Fladung, M., Ritter, E. Favre, J.M. (2004) A full saturated linkage map of Picea abies including AFLP, SSR, ESTP, 5S rDNA and morphological markers. Theoretical and Applied Genetics, 108, 1602 1613.
2. Belkhir, K., Borsa, P., Chikhi, L., Raufaste, N. Bonhomme, F. (1996) GENETIX 4.02, logiciel sous WindowsTM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS, Université de Montpellier II, Montpellier, France.
3. Bertorelle, G. Excoffier, L. (1998) Inferring admixture proportions from molecular data. Molecular Biology and Evolution, 15, 1298 1311.
4. Bucci, G. Vendramin, G.G. (2000) Delineation of genetic zones in the European Norway spruce natural range: preliminary evidence. Molecular Ecology, 9, 923 934.
5. Comps, B., Gömöry, D., Letouzey, J., Thiébaut B. Petit, R.J. (2001) Diverging trends between heterozygosity and allelic richness during postglacial colonisation in the European beech. Genetics, 157, 389 397.
6. Cwynar, L.C. MacDonald, G.M. (1987) Geographical variation of lodgepole pine in relation to population history. The American Naturalist, 129, 463 469.
7. Dancik, B.P. Yeh, F.C. (1983) Allozyme variability and evolution of lodgepole pine (Pinus contorta var. latifolia) and jack pine (P. banksiana) in Alberta. Canadian Journal of Genetics and Cytology, 25, 57 64.
8. Danzmann, R.G. Buchert, G.P. (1983) Isozyme variability in Central Ontario jack pine. Proceedings of the 28th Northeastern Tree Improvement Conference (ed. by R.T. Eckert pp. 232 248. Northeastern Forest Experiment Station, Durham, NH.
9. De Beaulieu, J.L., Andrieu, V., Ponel, P. Reille, M. (1994) The Weichselian Late-Glacial in southwestern Europe (Iberian Peninsula, Pyrenees, Massif Central, northern Apennines). Journal of Quaternary Sciences, 9, 101 107.
10. Demesure, B., Comps, B. Petit, R.J. (1996) Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L.) in Europe. Evolution, 50, 2515 2520.
11. Dumolin-Lapegue, S., Pemonge, M.H. Petit, R.J. (1997) Phylogeographic structure of white oaks throughout the European continent. Genetics, 146, 1475 1487.
12. Evanno, G., Regnaut, S. Goudet, J. (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14, 2611 2620.
13. Excoffier, L., Smouse P.E. Quattro, J.M. (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479 491.
14. Favarger, C. (1972) Endemism in the montane floras of Europe. Phytogeography and evolution (ed. by D.H. Valentine pp. 191 204. Academic Press, London.
15. Felsenstein, J. (1993) Phylogeny Inference Package (PHYLIP), Version 3.5. University of Washington, Seattle, WA.
16. Geburek, T. (1999) Genetic variation of Norway spruce (Picea abies (L.) Karst.) populations on Austria. III. Macrospatial allozyme patterns of high elevation populations. Forest Genetics, 6, 201 211.
17. Giannini, R., Morgante, M. Vendramin, G.G. (1991) Allozyme variation in Italian populations of Picea abies (L.) Karst. Silvae Genetica, 40, 160 166.
18. Goodman, S.J. (1997) RST CALC: a collection of computer programs for calculating unbiased estimates of genetic differentiation and determining their significance for microsatellite data. Molecular Ecology, 6, 881 885.
19. Guo, S.W. Thompson, E.A. (1992) Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometrics, 48, 361 372.
20. Hamrick, J.L., Godt, M.J.W. Sherman-Broyles, S.L. (1992) Factors influencing levels of genetic diversity in woody plant species. New Forest, 6, 95 124.
21. Hewitt, G.M. (1996) Some genetic consequences of ice age, and their role in divergence and speciation. Biological Journal of the Linnean Society, 58, 247 276.
22. Huff, D.R., Peakall, R. Smouse, P.E. (1993) RAPD variation within and among populations of outcrossing buffalograss (Buchloëdactyloides (Nutt.) Engelman). Theoretical and Applied Genetics, 96, 827 834.
23. Huntley, B. Birks, H.J.B. (1983) An atlas of past and present pollen maps for Europe: 0-13000 years ago. Cambridge University Press, Cambridge.
24. King, R.A. Ferris, C. (1998) Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Molecular Ecology, 7, 1151 1161.
25. Knowles, P. (1984) Genetic variability among and within closely spaced populations of lodgepole pine. Canadian Journal of Genetics and Cytology, 26, 177 184.
26. Lagercrantz, U. Ryman, N. (1990) Genetic structure of Norway spruce (Picea abies): concordance of morphological and allozymic variation. Evolution, 44, 38 53.
27. Liston, A., Rieseberg, L.H. Hanson, M.A. (1992) Geographic partitioning of chloroplast DNA variation in the genus Dastica (Dasticaeae). Plant Systematics and Evolution, 181, 121 132.
28. Mantel, N. (1967) The detection of disease clustering and a generalized regression approach. Cancer Research, 27, 209 220.
29. Maruyama, T. Fuerst, P.A. (1984) Population bottlenecks and nonequilibrium models in population genetics. I. Allele number when populations evolve from 0 variability. Genetics, 108, 745 763.
30. Maruyama, T. Fuerst, P.A. (1985) Population bottlenecks and nonequilibrium models in population genetics. II. Number of alleles in a small population that was formed by a recent bottleneck. Genetics, 111, 675 689.
31. Morgante, M. Vendramin, G.G. (1991) Genetic variation in Italian populations of Picea abies (L.) Karst. and Pinus leucodermis Ant. Genetic variation in European populations of forest trees (ed. by G. Müller-Starck M. Ziehe pp. 205 227. Sauerländer's, Frankfurt a. M.
32. Müller-Starck, G. (1995) Genetic variation in high elevated populations of Norway spruce (Picea abies (L.) Karst.) in Switzerland. Silvae Genetica, 44, 356 362.
33. Newton, A.C., Allnutt, T.R., Gillies, A.C.M., Lowe, A.J. Ennos, R.A. (1999) Molecular phylogeography, intraspecific variation and the conservation of tree species. Trends in Ecology and Evolution, 14, 140 145.
34. Paglia, G.P., Olivieri, A.M. Morgante, M. (1998) Towards second generation STS (sequence-tagged sites) linkage maps in conifers: a genetic map of Norway spruce (Picea abies Karst.). Molecular and General Genetics, 258, 466 478.
35. Pawlowski, B. (1970) Remarques sur l'endemisme dans la flore des Alpes et des Carpates. Vegetatio, 21, 181 243.
36. Peakall, R. Smouse, P.E. (2001) GenAlEx V5: Genetic Analysis in Excel. Population Genetic Software for teaching and research. Australian National University, Canberra.
37. Petit, R.J., Aguinagalde, I., de Beaulieu, J.L., Bittkau, C., Brewer, S., Cheddadi, R., Ennos, R., Fineschi, S., Grivet, D., Lascoux, M., Mohanty, A., Müller-Starck, G., Demesure-Musch, B., Palmé, A., Martin, J.P., Rendell, S. Vendramin, G.G. (2003) Glacial refugia: hotspots but not melting pots of genetic diversity. Science, 300, 1563 1565.
38. Pfeiffer, A., Olivieri, A.M. Morgante, M. (1997) Identification and characterization of microsatellites in Norway spruce (Picea abies K.). Genome, 40, 411 419.
39. Pritchard, J.K., Stephens, M. Donnelly, O. (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945 959.
40. Raymond, M. Rousset, F. (1995) GENEPOP (Ver. 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248 249.
41. Schmidt-Vogt, H. (1977) Die Fichte. Band I. Parey, Hamburg.
42. Schmidt-Vogt, H. (1986) Die Fichte. Verlag Paul Parey, Hamburg, Berlin.
43. Scotti, I., Vendramin, G.G., Matteotti, L.S., Scarponi, C., Sari-Gorla, M. Binelli, G. (2000) Postglacial recolonisation routes for Picea abies K. in Italy as suggested by the analysis of sequence-characterised amplified region (SCAR) markers. Molecular Ecology, 9, 699 708.
44. Scotti, I., Paglia, G.P., Magni, F. Morgante, M. (2002a) Efficient development of dinucleotide microsatellite markers in Norway spruce (Picea abies Karst.) through dot-blot selection. Theoretical and Applied Genetics, 104, 1035 1041.
45. Scotti, I., Magni, F., Paglia, G.P. Morgante, M. (2002b) Trinucleotide microsatellites in Norway spruce (Picea abies): their features and the development of molecular markers. Theoretical and Applied Genetics, 106, 40 50.
46. Scotti, I., Burelli, A., Cattonaro, F., Chagné, D., Fuller, J., Hedley, P.E., Jansson, G., Lalanne, C., Madur, D., Neale, D., Plomion, C., Powell, W., Troggio, M. Morgante, M. (2005) Analysis of the distribution of marker classes in a genetic linkage map: a case study in Norway spruce (Picea abies Karst.). Tree Genetics and Genomes, 1, 93 102.
47. Shaw, D.V. Allard, R.W. (1982) Isozyme heterozygosity in adult and open-pollinated embryo samples of Douglas-fir. Silva Fennica, 16, 115 121.
48. Slatkin, M. (1977) Gene flow and genetic drift in a species subject to frequent local extinctions. Theoretical Population Biology, 12, 253 262.
49. Slatkin, M. (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics, 139, 457 462.
50. Szmidt, A. Muona, O. (1984) Genetic effects of Scots pine (Pinus sylvestris L.) domestication. Population genetics in forestry (ed. by H.R. Gregorius pp. 241 252. Springer-Verlag, Berlin.
51. Taberlet, P., Fumagalli, L., Wust-Saucy, A.G. Cossons, J.F. (1998) Comparative phylogeography and postglacial colonisation routes in Europe. Molecular Ecology, 7, 453 464.
52. Tomaru, N., Takahashi, M., Tsumura, Y., Takahashi, M. Ohba, K. (1998) Intraspecific variation and phylogeographic patterns of Fagus crenata (Fagaceae) mitochondrial DNA. American Journal of Botany, 85, 629 636.
53. Van Dijk, P. Bakx-Schotman, T. (1998) Chloroplast DNA phylogeography and cytotype geography in autopolyploid Plantago media. Molecular Ecology, 6, 345 352.
54. Vendramin, G.G., Anzidei, M., Madaghiele, A., Sperisen, C. Bucci, G. (2000) Chloroplast microsatellites analysis reveals the presence of population subdivision in Norway spruce. Genome, 43, 68 77.
55. Weir, B.S. Cockerham, C.C. (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 1370.
56. Yazdani, R., Lindgren, D. Rudin, D. (1984) Gene dispersion and selfing frequency in a seed-tree stand of Pinus sylvestris (L.). Population genetics in forestry (ed. by H.R. Gregorius pp. 139 154. Springer-Verlag, Berlin.