메뉴 건너뛰기




Volumn 2, Issue , 2007, Pages

The stochastic behavior of a molecular switching circuit with feedback

Author keywords

[No Author keywords available]

Indexed keywords


EID: 34447332557     PISSN: None     EISSN: 17456150     Source Type: Journal    
DOI: 10.1186/1745-6150-2-13     Document Type: Article
Times cited : (18)

References (38)
  • 1
    • 0035579883 scopus 로고    scopus 로고
    • Mathematical Model of the Cell Division Cycle of Fission Yeast
    • 10.1063/1.1345725 12779461
    • Novak B Pataki Z Ciliberto A Tyson JJ Mathematical Model of the Cell Division Cycle of Fission Yeast Chaos 2001 11 277-286 10.1063/1.1345725 12779461
    • (2001) Chaos , vol.11 , pp. 277-286
    • Novak, B.1    Pataki, Z.2    Ciliberto, A.3    Tyson, J.J.4
  • 2
    • 0036905483 scopus 로고    scopus 로고
    • The Dynamics of Cell Cycle Regulation
    • 10.1002/bies.10191 12447975
    • Tyson JJ Csikasz-Nagy A Novak B The Dynamics of Cell Cycle Regulation Bioessays 2002 24 1095-1109 10.1002/bies.10191 12447975
    • (2002) Bioessays , vol.24 , pp. 1095-1109
    • Tyson, J.J.1    Csikasz-Nagy, A.2    Novak, B.3
  • 3
    • 0033214147 scopus 로고    scopus 로고
    • Xenopus Oocyte Maturation: New Lessons from a Good Egg
    • 10.1002/(SICI)1521-1878(199910)21:10<833::AID-BIES5>3.0.CO;2-P 10497333
    • Ferrell JE Xenopus Oocyte Maturation: New Lessons from a Good Egg Bioessays 1999 21 833-842 10.1002/ (SICI)1521-1878(199910)21:10<833::AID-BIES5>3.0.CO;2-P 10497333
    • (1999) Bioessays , vol.21 , pp. 833-842
    • Ferrell, J.E.1
  • 4
    • 0037605637 scopus 로고    scopus 로고
    • Bistability in Cell Signaling: How To Make Continuous Processes Discontinuous, and Reversible Processes Irreversible
    • 10.1063/1.1349894 12779456
    • Ferrell JE Xiong W Bistability in Cell Signaling: How To Make Continuous Processes Discontinuous, and Reversible Processes Irreversible Chaos 2001 11 227-236 10.1063/1.1349894 12779456
    • (2001) Chaos , vol.11 , pp. 227-236
    • Ferrell, J.E.1    Xiong, W.2
  • 5
    • 0034644270 scopus 로고    scopus 로고
    • The Segment Polarity Network Is a Robust Developmental Module
    • 10.1038/35018085 10910359
    • von Dassow G Meir E Munro EM Odell GM The Segment Polarity Network Is a Robust Developmental Module Nature 2000 406 188-192 10.1038/35018085 10910359
    • (2000) Nature , vol.406 , pp. 188-192
    • von Dassow, G.1    Meir, E.2    Munro, E.M.3    Odell, G.M.4
  • 6
    • 0010424768 scopus 로고
    • A Mechanism for Memory Storage Insensitive to Molecular Turnover: A Bistable Autophosphorylating Kinase
    • 397705 2986148 10.1073/pnas.82.9.3055
    • Lisman JE A Mechanism for Memory Storage Insensitive to Molecular Turnover: A Bistable Autophosphorylating Kinase Proc Natl Acad Sci USA 1985 82 3055-3057 397705 2986148 10.1073/pnas.82.9.3055
    • (1985) Proc Natl Acad Sci USA , vol.82 , pp. 3055-3057
    • Lisman, J.E.1
  • 7
    • 0001424903 scopus 로고
    • An Amplified Sensitivity Arising from Covalent Modification in Biological Systems
    • 349147 6947258 10.1073/pnas.78.11.6840
    • Goldbeter A Koshland DE An Amplified Sensitivity Arising from Covalent Modification in Biological Systems Proc Natl Acad Sci USA 1981 78 6840-6844 349147 6947258 10.1073/pnas.78.11.6840
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 6840-6844
    • Goldbeter, A.1    Koshland, D.E.2
  • 8
    • 0029790351 scopus 로고    scopus 로고
    • Ultrasensitivity in the Mitogen-activated Protein Kinase Cascade
    • Huang CY Ferrell JE Ultrasensitivity in the Mitogen-activated Protein Kinase Cascade Proc Natl Acad Sci USA 1996 93 0078-1008
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 0078-1008
    • Huang, C.Y.1    Ferrell, J.E.2
  • 9
    • 0037078982 scopus 로고    scopus 로고
    • Control, Exploitation and Tolerance of Intracellular Noise
    • 10.1038/nature01258 12432408
    • Rao V Wolf DM Arkin AP Control, Exploitation and Tolerance of Intracellular Noise Nature 2002 420 231-237 10.1038/nature01258 12432408
    • (2002) Nature , vol.420 , pp. 231-237
    • Rao, V.1    Wolf, D.M.2    Arkin, A.P.3
  • 10
    • 0037376655 scopus 로고    scopus 로고
    • Sniffers, Buzzers, Toggles and Blinkers: Dynamics of Regulatory and Signaling Pathways in the Cell
    • 10.1016/S0955-0674(03)00017-6 12648679
    • Tyson JJ Chen KC Novak B Sniffers, Buzzers, Toggles and Blinkers: Dynamics of Regulatory and Signaling Pathways in the Cell Curr Opin Cell Biol 2003 15 221-231 10.1016/S0955-0674(03)00017-6 12648679
    • (2003) Curr Opin Cell Biol , vol.15 , pp. 221-231
    • Tyson, J.J.1    Chen, K.C.2    Novak, B.3
  • 11
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic Gene Expression in a Single Cell
    • 10.1126/science.1070919 12183631
    • Elowitz MB Levine AJ Siggia ED Swain PS Stochastic Gene Expression in a Single Cell Science 2002 297 1183-1186 10.1126/science.1070919 12183631
    • (2002) Science , vol.297 , pp. 1183-1186
    • Elowitz, M.B.1    Levine, A.J.2    Siggia, E.D.3    Swain, P.S.4
  • 13
    • 0033083733 scopus 로고    scopus 로고
    • It's a Noisy Business! Genetic regulation at the nanomolar scale
    • 10.1016/S0168-9525(98)01659-X
    • McAdams HH Arkin A It's a Noisy Business! Genetic regulation at the nanomolar scale Trends Genetics 1999 15 65-69 10.1016/ S0168-9525(98)01659-X
    • (1999) Trends Genetics , vol.15 , pp. 65-69
    • McAdams, H.H.1    Arkin, A.2
  • 14
    • 0034981558 scopus 로고    scopus 로고
    • Noise in a Minimal Regulatory Network: Plasmid Copy Number Control
    • 10.1017/S0033583501003663
    • Paulsson J Ehrenberg M Noise in a Minimal Regulatory Network: Plasmid Copy Number Control Q Rev Biophys 2002 34 1-59 10.1017/S0033583501003663
    • (2002) Q Rev Biophys , vol.34 , pp. 1-59
    • Paulsson, J.1    Ehrenberg, M.2
  • 15
    • 0035902599 scopus 로고    scopus 로고
    • Intrinsic Noise in Gene Regulatory Networks
    • 37484 11438714 10.1073/pnas.151588598
    • Thattai M Oudenaarden A Intrinsic Noise in Gene Regulatory Networks Proc Natl Acad Sci USA 2001 98 8614-8619 37484 11438714 10.1073/pnas.151588598
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 8614-8619
    • Thattai, M.1    Oudenaarden, A.2
  • 17
    • 0027716813 scopus 로고
    • Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos
    • 8126097
    • Novak B Tyson JJ Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos J Cell Sci 1993 106 1153-1168 8126097
    • (1993) J Cell Sci , vol.106 , pp. 1153-1168
    • Novak, B.1    Tyson, J.J.2
  • 18
    • 0003133883 scopus 로고
    • Probabilistic Logics and the Synthesis of Reliable Organisms from Unreliable Components
    • von Neumann J Probabilistic Logics and the Synthesis of Reliable Organisms from Unreliable Components Automata Studies 1956 34 43-98
    • (1956) Automata Studies , vol.34 , pp. 43-98
    • von Neumann, J.1
  • 19
    • 0032922002 scopus 로고    scopus 로고
    • PhosphoBase, a Database of Phosphorylation Sites: Release 2
    • 148144 http://phospho.elm.eu.org 9847189 10.1093/nar/27.1.237
    • Kreegipuu A Blom N Brunak S PhosphoBase, a Database of Phosphorylation Sites: Release 2 Nucleic Acids Res 1999 27 237-239 http:// phospho.elm.eu.org 148144 9847189 10.1093/nar/27.1.237
    • (1999) Nucleic Acids Res , vol.27 , pp. 237-239
    • Kreegipuu, A.1    Blom, N.2    Brunak, S.3
  • 20
    • 0842285841 scopus 로고    scopus 로고
    • Summing Up the Noise in Gene Networks
    • 10.1038/nature02257 14749823
    • Paulsson J Summing Up the Noise in Gene Networks Nature 2004 427 415-418 10.1038/nature02257 14749823
    • (2004) Nature , vol.427 , pp. 415-418
    • Paulsson, J.1
  • 21
    • 0032214489 scopus 로고    scopus 로고
    • Evolution of Osmotic Stress Signaling Via Map Kinase Cascades
    • Kültz D Burg M Evolution of Osmotic Stress Signaling Via Map Kinase Cascades J Exp Bio 1998 201 3015-3021
    • (1998) J Exp Bio , vol.201 , pp. 3015-3021
    • Kültz, D.1    Burg, M.2
  • 22
    • 0842288229 scopus 로고    scopus 로고
    • Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
    • 10.1083/jcb.200308060 14744999
    • Markevich NI Hoek JB Kholodenko BN Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades The Journal of Cell Biology 2004 164 353-359 10.1083/jcb.200308060 14744999
    • (2004) The Journal of Cell Biology , vol.164 , pp. 353-359
    • Markevich, N.I.1    Hoek, J.B.2    Kholodenko, B.N.3
  • 23
    • 33744744785 scopus 로고    scopus 로고
    • Understanding bistability in complex enzyme-driven reaction networks
    • 1592242 16735474 10.1073/pnas.0602767103
    • Craciun G Tang Y Feinberg M Understanding bistability in complex enzyme-driven reaction networks Proc Natl Acad Sci USA 2006 103 8697-8702 1592242 16735474 10.1073/pnas.0602767103
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 8697-8702
    • Craciun, G.1    Tang, Y.2    Feinberg, M.3
  • 24
    • 0030746219 scopus 로고    scopus 로고
    • Mechanistic studies of the dual phosphorylation of mitogen-activated protein kinase
    • 10.1074/jbc.272.30.19008 9228083
    • Ferrell JE Bhatt RR Mechanistic studies of the dual phosphorylation of mitogen-activated protein kinase J Biol Chem 1997 272 19008-19016 10.1074/jbc.272.30.19008 9228083
    • (1997) J Biol Chem , vol.272 , pp. 19008-19016
    • Ferrell, J.E.1    Bhatt, R.R.2
  • 25
    • 0030972112 scopus 로고    scopus 로고
    • The activating dual-phosphorylation of MAPK by MEK is nonprocessive
    • 10.1021/bi970535d 9166761
    • Burack WR Sturgill TW The activating dual-phosphorylation of MAPK by MEK is nonprocessive Biochemistry 1997 36 5929-5933 10.1021/bi970535d 9166761
    • (1997) Biochemistry , vol.36 , pp. 5929-5933
    • Burack, W.R.1    Sturgill, T.W.2
  • 26
    • 27644496624 scopus 로고    scopus 로고
    • A compendium of signals and responses triggered by prodeath and prosurvival cytokines
    • 10.1074/mcp.M500158-MCP200
    • Gaudet S Janes KA Albeck J Pace EA Lauffenburger DA Sorger PK A compendium of signals and responses triggered by prodeath and prosurvival cytokines Mol Cell Proteomics 2005 10 1569-1590 10.1074/ mcp.M500158-MCP200
    • (2005) Mol Cell Proteomics , vol.10 , pp. 1569-1590
    • Gaudet, S.1    Janes, K.A.2    Albeck, J.3    Pace, E.A.4    Lauffenburger, D.A.5    Sorger, P.K.6
  • 28
    • 0026069669 scopus 로고
    • Protein phosphorylation and the regulation of cellular processes by the homologous two-component regulatory systems of bacteria
    • Ninfa AJ Protein phosphorylation and the regulation of cellular processes by the homologous two-component regulatory systems of bacteria Genet Eng 1991 13 39-72
    • (1991) Genet Eng , vol.13 , pp. 39-72
    • Ninfa, A.J.1
  • 29
    • 84898965048 scopus 로고    scopus 로고
    • Stability and Noise in Biochemical Switches
    • Cambridge: MIT Press Leen TK, Dietterich TG, Tresp V
    • Bialek W Stability and Noise in Biochemical Switches Advances in Neural Information Processing Cambridge: MIT Press Leen TK, Dietterich TG, Tresp V 2001 13
    • (2001) Advances in Neural Information Processing , vol.13
    • Bialek, W.1
  • 31
    • 0032386826 scopus 로고    scopus 로고
    • The Uses of Quantum Field Theory in Diffusion-limited Reactions
    • 10.1103/RevModPhys.70.979
    • Mattis DC Glasser ML The Uses of Quantum Field Theory in Diffusion-limited Reactions Rev Mod Phys 1998 70 979-1001 10.1103/ RevModPhys.70.979
    • (1998) Rev Mod Phys , vol.70 , pp. 979-1001
    • Mattis, D.C.1    Glasser, M.L.2
  • 32
    • 1842526514 scopus 로고    scopus 로고
    • [Lectures presented at the Troisième Cycle de la Suisse Romande, available at]
    • Cardy JL Field Theory and Nonequilibrium Statistical Mechanics 1999 [Lectures presented at the Troisième Cycle de la Suisse Romande, available at http://www-thphys.physics.ox.ac.uk/users/JohnCardy/]
    • (1999) Field Theory and Nonequilibrium Statistical Mechanics
    • Cardy, J.L.1
  • 33
    • 0037418265 scopus 로고    scopus 로고
    • Stochastic Gene Expression As a Many-body Problem
    • 151348 12606710 10.1073/pnas.2627987100
    • Sasai M Wolynes P Stochastic Gene Expression As a Many-body Problem Proc Nat Acad Sci USA 2003 100 2374-2379 151348 12606710 10.1073/ pnas.2627987100
    • (2003) Proc Nat Acad Sci USA , vol.100 , pp. 2374-2379
    • Sasai, M.1    Wolynes, P.2
  • 34
    • 2342464752 scopus 로고    scopus 로고
    • Enhancement of the Stability of Genetic Swtiches by Overlapping Upstream Regulatory Domains
    • Warren PB ten Wolde PR Enhancement of the Stability of Genetic Swtiches by Overlapping Upstream Regulatory Domains Phys Rev Lett 2004 92 128101(1)-128101(4)
    • (2004) Phys Rev Lett , vol.92 , pp. 128101-128104
    • Warren, P.B.1    ten Wolde, P.R.2
  • 35
    • 19344362210 scopus 로고    scopus 로고
    • The stability of a stochastic CaMKII switch: Dependence on the number of enzyme molecules and protein turnover
    • 1069645 15819604 10.1371/journal.pbio.0030107
    • Miller P Zhabotinsky AM Lisman JE Wang XJ The stability of a stochastic CaMKII switch: Dependence on the number of enzyme molecules and protein turnover PLoS Biol 2005 3 4 e107 1069645 15819604 10.1371/ journal.pbio.0030107
    • (2005) PLoS Biol , vol.3
    • Miller, P.1    Zhabotinsky, A.M.2    Lisman, J.E.3    Wang, X.J.4
  • 36
    • 4243911221 scopus 로고    scopus 로고
    • Epigenetics As a First Exit Problem
    • 048101(4) 10.1103/PhysRevLett.88.048101
    • Aurell E Sneppen K Epigenetics As a First Exit Problem Phys Rev Lett 2002 88 048101(1)-048101(4) 10.1103/PhysRevLett.88.048101
    • (2002) Phys Rev Lett , vol.88 , pp. 048101-048104
    • Aurell, E.1    Sneppen, K.2
  • 38
    • 26844571282 scopus 로고    scopus 로고
    • Multisite Protein Phosphorylation Makes a Good Threshold But Can Be a Poor Switch
    • 10.1073/pnas.0507322102
    • Gunawardena J Multisite Protein Phosphorylation Makes a Good Threshold But Can Be a Poor Switch Proc Natl Acad Sci USA 2005 102 4617-1462 10.1073/pnas.0507322102
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 1462-4617
    • Gunawardena, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.