메뉴 건너뛰기




Volumn 23, Issue 11, 2007, Pages 1313-1320

A sequential Monte Carlo EM approach to the transcription factor binding site identification problem

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR;

EID: 34447327541     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm054     Document Type: Article
Times cited : (2)

References (24)
  • 1
    • 34447315671 scopus 로고    scopus 로고
    • Monte Carlo methods for absolute beginners
    • Andrieu,C. (2004) Monte Carlo methods for absolute beginners. Lecture Notes in Computer Science, pp. 113-145.
    • (2004) Lecture Notes in Computer Science , pp. 113-145
    • Andrieu, C.1
  • 4
    • 2242491935 scopus 로고    scopus 로고
    • Computational and inferential difficulties with mixture posterior distributions
    • Celeux,G. et al. (2000) Computational and inferential difficulties with mixture posterior distributions. J. Am. Stat. Assoc., 95
    • (2000) J. Am. Stat. Assoc , vol.95
    • Celeux, G.1
  • 5
    • 0012338718 scopus 로고    scopus 로고
    • A sequential particle filter method for static models
    • Chopin,N. (2002) A sequential particle filter method for static models. Biometrika, 89, 539-552.
    • (2002) Biometrika , vol.89 , pp. 539-552
    • Chopin, N.1
  • 6
    • 0042622369 scopus 로고    scopus 로고
    • INCLUSive: A web portal and service registry for microarray and regulatory sequence analysis
    • Coessens,B. et al. (2003) INCLUSive: A web portal and service registry for microarray and regulatory sequence analysis. Nucleic Acids Res., 31, 3468-3470.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3468-3470
    • Coessens, B.1
  • 7
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: A sequence logo generator
    • Crooks,G.E. et al. (2004) WebLogo: A sequence logo generator. Genome Res., 14, 1188-1190.
    • (2004) Genome Res , vol.14 , pp. 1188-1190
    • Crooks, G.E.1
  • 8
    • 0002629270 scopus 로고
    • Maximum likelihood from incomplete data via the EM algorithm (with discussion)
    • Dempster,A.P. et al. (1977) Maximum likelihood from incomplete data via the EM algorithm (with discussion). J. R. Stat. Soci., Ser. B, 39, 1-38.
    • (1977) J. R. Stat. Soci., Ser. B , vol.39 , pp. 1-38
    • Dempster, A.P.1
  • 9
    • 14944363825 scopus 로고    scopus 로고
    • NestedMICA: Sensitive inference of overrepresented motifs in nucleic acid sequence
    • Down,T.A. and Hubbard,T.J.P. (2005) NestedMICA: Sensitive inference of overrepresented motifs in nucleic acid sequence. Nucleic Acids Res. 33, 1445-1453.
    • (2005) Nucleic Acids Res , vol.33 , pp. 1445-1453
    • Down, T.A.1    Hubbard, T.J.P.2
  • 11
    • 26444584579 scopus 로고    scopus 로고
    • Limitations and potentials of current motif discovery algorithms
    • Hu,J. et al. (2005) Limitations and potentials of current motif discovery algorithms. Bioinformatics, 33,
    • (2005) Bioinformatics , vol.33
    • Hu, J.1
  • 12
    • 0034628901 scopus 로고    scopus 로고
    • Computational identification of cis-regulatory elements associated with groups of functionally related genes in saccharomyces cerevisiae
    • Hughes,J.D. et al. (2000) Computational identification of cis-regulatory elements associated with groups of functionally related genes in saccharomyces cerevisiae. J. Mol. Biol., 296, 1205-1214.
    • (2000) J. Mol. Biol , vol.296 , pp. 1205-1214
    • Hughes, J.D.1
  • 13
    • 0034628901 scopus 로고    scopus 로고
    • Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
    • Hughes,J.D. et al. (2000) Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J. Mol. Biol., 296, 1205-1214.
    • (2000) J. Mol. Biol , vol.296 , pp. 1205-1214
    • Hughes, J.D.1
  • 14
    • 0346490298 scopus 로고    scopus 로고
    • Computational discovery of gene regulatory binding motifs: A Bayesian perspective
    • Jensen,S.T. et al. (2004) Computational discovery of gene regulatory binding motifs: A Bayesian perspective. Stat. Sci., 19, 188-204.
    • (2004) Stat. Sci , vol.19 , pp. 188-204
    • Jensen, S.T.1
  • 16
    • 0027912333 scopus 로고
    • Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
    • Lawrence,C.E. et al. (1993) Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment. Science, 262 208-214.
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.E.1
  • 19
    • 0032573426 scopus 로고    scopus 로고
    • A comprehensive library of DNA binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome
    • Robison,K. et al. (1998) A comprehensive library of DNA binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome. J. Mol. Biol., 284, 241-254.
    • (1998) J. Mol. Biol , vol.284 , pp. 241-254
    • Robison, K.1
  • 20
    • 84950788916 scopus 로고
    • The calculation of posterior distributions by data augAentation: Comment: a noniterative sampling/importance resampling alternative to the data augmentation algorithm for creating a few imputations when fractions of missing information are modest: The SIR algorithm
    • Rubin,D.B. (1987) The calculation of posterior distributions by data augAentation: Comment: a noniterative sampling/importance resampling alternative to the data augmentation algorithm for creating a few imputations when fractions of missing information are modest: The SIR algorithm. J. Am. Stat. Assoc., 82.
    • (1987) J. Am. Stat. Assoc , vol.82
    • Rubin, D.B.1
  • 21
    • 84950758368 scopus 로고
    • The calculation of posterior distributions by data augmentation
    • Tanner,M. and Wong,W. (1987) The calculation of posterior distributions by data augmentation. J. Am. Stat. Assoc., 82, 528-550.
    • (1987) J. Am. Stat. Assoc , vol.82 , pp. 528-550
    • Tanner, M.1    Wong, W.2
  • 22
    • 0043123063 scopus 로고    scopus 로고
    • Gibbs recursive sampler: Finding transcription factor binding sites
    • Thompson,W. et al. (2003) Gibbs recursive sampler: Finding transcription factor binding sites. Nucleic Acids Res., 31, 3580-3585.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3580-3585
    • Thompson, W.1
  • 24
    • 0033976586 scopus 로고    scopus 로고
    • TRANSFAC: An integrated system for gene expression regulation
    • Wingender,E. et al. (2000) TRANSFAC: An integrated system for gene expression regulation. Nucleic Acids Res., 28, 316-319.
    • (2000) Nucleic Acids Res , vol.28 , pp. 316-319
    • Wingender, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.