Rapid determination of genomic DNA length for new bacteriophages

Electrophoresis

Volumn 28, Issue 12, 2007, Pages 1896-1902

  Serwer, Philip ^a   Hayes, Shirley J ^a   Thomas, Julie A ^a   Griess, Gary A ^a   Hardies, Stephen C ^a  

^a UNIVERSITY OF TEXAS HEALTH SCIENCE CENTER AT SAN ANTONIO   (United States)

Author keywords

Agarose gel; DNA sequencing; Genomic; Microbial ecology; PFGE

Indexed keywords

BACTERIOPHAGES; DNA; DNA SEQUENCES; ECOLOGY; GENE ENCODING;

AGAROSE GEL; CELL LYSATES; DNA LENGTH; DNA SEQUENCING; GENOMIC DNA; GENOMICS; INFECTED CELLS; MICROBIAL ECOLOGY; NOVEL GENES; PFGE;

GENOME;

DOUBLE STRANDED DNA; GENOMIC DNA; PHENOL; VIRUS DNA;

ARTICLE; BACTERIOPHAGE; CELL LYSATE; CONTROLLED STUDY; DNA DETERMINATION; DNA EXTRACTION; DNA ISOLATION; DNA SEQUENCE; DNA VIRUS; LIQUID CULTURE; NONHUMAN; PULSED FIELD GEL ELECTROPHORESIS; VIRUS GENOME;

EID: 34447285777     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.200600672     Document Type: Article

References (49)

1. Stent, G., Molecular Biology of Bacterial Viruses, W. H. Freeman and Co., San Francisco, CA 1963.
2. Campbell, A., Nat. Rev. Genet. 2003, 4, 471-477.
3. Hambly, E., Suttle, C. A., Curr. Opin. Microbiol. 2005, 8, 444-450.
4. Chibani-Chennoufi, S., Bruttin, A., Dillmann, M.-L, Brüssow, H., J. Bacteriol. 2004, 186, 3677-3686.
5. Breitbart, M., Rohwer, F., Trends Microbiol. 2005, 13, 278-284.
6. Brüssow, H., Kutter, E., in: Kutter, E., Sulakvelidze, A. (Eds.), Bacteriophages: Biology and Applications, CRC Press, Boca Raton, FL 2005, pp. 129-163.
7. Rohwer, F., Cell 2003, 113, 141.
8. Azam, F., Science 1998, 280, 694-696.
9. Boyd, E. F., Davis, B. M., Hochhut, B., Trends Microbiol. 2001, 9, 137-144.
10. Waldor, M. K., Friedman, D. I., Curr. Opin. Microbiol. 2005, 8, 459-465.
11. Clark, J. R., March, J. B., Trends Biotechnol. 2006, 24, 212-218.
12. Irving, M. B., Pan, O., Scott, J. K., Curr. Opin. Chem. Biol. 2001, 5, 314-324.
13. Liu, J., Dehbi, M., Moeck, G., Arhin, F. et al., Nat. Biotechnol. 2004, 22, 185-191.
14. Daniel, R., Curr. Opin. Biotechnol. 2004, 15, 188-204.
15. Head, I. M., Jones, D. M., Roling, W. F., Nat. Rev. Microbiol. 2006, 4, 173-182.
16. Miedzybrodzki, R., Fortuna, W., Weber-Dabrowska, B., Gorski, A., Virus Res. 2005, 110, 11-8.
17. Goodridge, L. D., Trends Biotechnol. 2004, 22, 384-385.
18. Connerton, P. L., Loc Carrillo, C. M., Swift, C., Dillon, E. et al., Appl. Environ. Microbiol. 2004, 70, 3877-3883.
19. Matsuzaki, S., Rashel, M., Uchiyama, J., Sakurai, S. et al., J. Infect. Chemother. 2005, 11, 211-219.
20. Sulakvelidze, A., Drug Discov. Today 2005, 10, 807-809.
21. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., Lipman, D. J., J. Mol. Biol. 1990, 215, 403-410.
22. Paul, J. H., Sullivan, M. B., Curr. Opin. Biotechnol. 2005, 16, 299-307.
23. Prangishvili, D., Garrett, R. A., Koonin, E. V., Virus Res. 2006, 117, 52-67.
24. Casjens, S. R., Curr. Opin. Microbiol. 2005, 8, 451-458.
25. Edwards, R. A., Rohwer, F., Nat. Rev. Microbiol. 2005, 3, 504-510.
26. Hendrix, R. W., Curr. Opin. Microbiol. 2003, 6, 506-511.
27. Mesyanzhinov, V. V., Robben, J., Grymonprez, B., Kostyuchenko, V. A. et al., J. Mol. Biol. 2002, 317, 1-19.
28. Petrov, V. M., Nolan, J. M., Bertrand, C., Levy, D. et al., J. Mol. Biol. 2006, 361, 46-68.
29. Iyer, L. M., Balaji, S., Koonin, E. V., Aravind, L., Virus Res. 2006, 117, 156-184.
30. Serwer, R, Hayes, S. J., Zaman, S., Lieman, K. et al., Virology 2004, 329, 412-424.
31. Prigent, M., Leroy, M., Confalonieri, F., Dutertre, M., DuBow, M. S., Extremophiles 2005, 9, 289-296.
32. Sabet, S., Chu, W., Jiang, S. C., Microb. Ecol. 2006, 51, 543-554.
33. Shendure, J., Porreca, G. J., Reppas, N. B., Lin, X. et al., Science 2005, 309, 1728-1732.
34. Goldberg, S. M., Johnson, J., Busam, D., Feldblyum, T. et al., Proc. Natl. Acad Sci. U.S.A. 2006, 103, 11240-11245.
35. Pajunen, M. I, Elizondo, M. R., Skurnik, M., Kieleczawa, J., Molineux, I. J. J. Mol. Biol. 2002, 319, 1115-1132.
36. Fangman, W. L., Nucleic Acids Res. 1978, 5, 653-665.
37. Louie, D., Serwer, P, Nucleic Acids Res. 1991, 19, 3047-3054.
38. Serwer, P, Estrada, A., Harris, R. A., Biophys. J. 1995, 69, 2649-2660.
39. Olson, M. V., in: Setlow, J. K. (Ed.), Genetic Engineering, Principles and Methods, Volume II, Plenum Press, New York 1989, pp. 183-227.
40. Birren, B. W., Lai, E., Pulsed Field Gel Electrophoresis - A Laboratory Manual, Academic Press, New York 1990.
41. Hardies, S. C., Comeau, A. M., Serwer, R, Suttle, C. A., Virology 2003, 310, 359-371.
42. Margulies, M., Egholm, M., Altman, W. E., Attiya, S. et al., Nature 2005, 437, 376-380.
43. Wang, H., Wu, I, Yang, Q., Catalano, C. E., Serwer, R, J. Microsc. 2005, 217, 83-92.
44. Carlson, K., in: Kutter, E., Sulakvelidze, A. (Eds.), Bacteriophages: Biology and Applications, CRC Press, Boca Raton, FL 2005, pp. 437-494.
45. Sanger, F., Coulson, A. R., Hong, G. F., Hill, D. F., Petersen, G. B., J. Mol. Biol. 1982, 162, 729-773.
46. Dancis, B. M., Biophys. J. 1978, 24, 489-503.
47. Serwer, P., Biochemistry 1980, 19, 3001-3004.
48. Serwer, P., Biotechnol. Genet. Eng. Rev. 1990, 8, 319-343.
49. Riesenfeld, C. S., Schloss, P. D., Handelsman, J., Annu. Rev. Genet. 2004, 38, 525-552.