Microarray analysis of gene expression in murine cardiac graft infiltrating cells

Methods in Molecular Biology

Volumn 366, Issue , 2007, Pages 3-12

  Liang, Yurong ^a   Lu, Xin ^a   Perkins, David L ^a  

^a NONE

Author keywords

Bioinformatics; Gene expression; Heart transplantation; Microarray; Mouse

Indexed keywords

MURINAE; MUS MUSCULUS;

ANIMAL; ARTICLE; CYTOTOXIC T LYMPHOCYTE; DNA MICROARRAY; GENE EXPRESSION PROFILING; HEART TRANSPLANTATION; IMMUNOLOGY; METHODOLOGY; MOUSE;

ANIMALS; GENE EXPRESSION PROFILING; HEART TRANSPLANTATION; MICE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; T-LYMPHOCYTES, CYTOTOXIC;

EID: 34447272691     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1385/1-59745-030-8:3     Document Type: Article

References (15)

1. Christopher, K., Mueller, T. F., Ma, C., Liang, Y., and Perkins, D. L. (2002) Analysis of the innate and adaptive phases of allograft rejection by cluster analysis of transcriptional profiles. J. Immunol. 169, 522-530.
2. Christopher, K., Mueller, T. F., DeFina, R., et al. (2003) The graft response to transplantation: a gene expression profile analysis. Physiol. Genomics 15, 52-64.
3. DeFina, R. A., Liang, Y., He, H., et al. (2004) Analysis of immunoglobulin and T-cell receptor gene deficiency in graft rejection by gene expression profiles. Transplantation 77, 580-586.
4. Liang, Y., Christopher, K., DeFina, R., et al. (2003) Analysis of cytokine functions in graft rejection by gene expression profiles. Transplantation 76, 1749-1758.
5. He, H., Stone, J. R., and Perkins, D. L. (2002) Analysis of robust innate immune response after transplantation in the absence of adaptive immunity. Transplantation 73, 853-861.
6. Corry, R. J., Winn, H. J., and Russell, P. S. (1973) Heart transplantation in congenic strains of mice. Transplant. Proc. 5, 733-735.
7. McKee, C. M., Defina, R., He, H., Haley, K. J., Stone, J. R., and Perkins, D. L. (2002) Prolonged allograft survival in TNF receptor 1-deficient recipients is due to immunoregulatory effects, not to inhibition of direct antigraft cytotoxicity. J. Immunol. 168, 483-489.
8. Brazma, A., Hingamp, P., Quackenbush, J., et al. (2001) Minimum information about a microarray experiment (MIAME) - toward standards for microarray data. Nat. Genet. 29, 365-371.
9. Eisen, J. S. (1998) Genetic and molecular analyses of motoneuron development. Curr. Opin. Neurobiol. 8, 697-704.
10. Zhang, X., Lu, X., Shi, Q., et al. (2006) Recursive SVM feature selection and sample classification for mass-spectrometry and micrarray data. BMC Bioinformatics 7, 197.
11. Castillo-Davis, C. L and Hartl, D. L. (2003) Gene Merge - post-genomic analysis, data mining, and hypothesis testing. Bioinformatics 19, 891-892.
12. Tseng, G. C. and Wong, W. H. (2005) Tight clustering: a resampling-based approach for identifying stable and tight patterns in data. Biometrics 61, 10-16.
13. Liu, X., Brutlag, D. L., and Liu, J. S. (2001) BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pac. Symp. Biocomput. 127-138.
14. Liu, X. S., Brutlag, and Liu, J. S. (2002) An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. Nat. Biotechnol. 20, 835-839.
15. Liu, Y., Wei, L., Batzoglou, S., Brutlag, D. L., Liu, J. S., and Liu, X. S. (2004) A suite of web-based programs to search for transcriptional regulatory motifs. Nucleic Acids Res. 32, W204-207.