메뉴 건너뛰기




Volumn 32, Issue WEB SERVER ISS., 2004, Pages

A suite of web-based programs to search for transcriptional regulatory motifs

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PROTEIN;

EID: 3242888891     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh461     Document Type: Article
Times cited : (32)

References (11)
  • 1
    • 0035261381 scopus 로고    scopus 로고
    • Genomic strategies to identify mammalian regulatory sequences
    • Pennacchio,L.A. and Rubin,E.M. (2001) Genomic strategies to identify mammalian regulatory sequences. Nature Rev. Genet., 2, 100-109.
    • (2001) Nature Rev. Genet. , vol.2 , pp. 100-109
    • Pennacchio, L.A.1    Rubin, E.M.2
  • 3
    • 0031787969 scopus 로고    scopus 로고
    • Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
    • Roth,F.P., Hughes,J.D., Estep,P.W. and Church,G.M. (1998) Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat. Biotechnol., 16, 939-945.
    • (1998) Nat. Biotechnol. , vol.16 , pp. 939-945
    • Roth, F.P.1    Hughes, J.D.2    Estep, P.W.3    Church, G.M.4
  • 4
    • 0025372992 scopus 로고
    • Identification of consensus patterns in unaligned DNA sequences known to be functionally related
    • Hertz,G.Z., Hartzell,G.W., III and Stormo,G.D. (1990) Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Comput. Appl. Biosci., 6, 81-92.
    • (1990) Comput. Appl. Biosci. , vol.6 , pp. 81-92
    • Hertz, G.Z.1    Hartzell III, G.W.2    Stormo, G.D.3
  • 5
    • 84950424966 scopus 로고
    • Bayesian models for multiple local sequence alignment and Gibbs sampling strategies
    • Liu,J.S., Neuwald,A.F. and Lawrence,C.E. (1995) Bayesian models for multiple local sequence alignment and Gibbs sampling strategies. J. Am. Stat. Assoc., 90, 1156-1170.
    • (1995) J. Am. Stat. Assoc. , vol.90 , pp. 1156-1170
    • Liu, J.S.1    Neuwald, A.F.2    Lawrence, C.E.3
  • 6
    • 0035228215 scopus 로고    scopus 로고
    • BioProspector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
    • Liu,X., Brutlag,D.L. and Liu,J.S. (2001) BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pac. Symp. Biocomput., 127-138.
    • (2001) Pac. Symp. Biocomput. , pp. 127-138
    • Liu, X.1    Brutlag, D.L.2    Liu, J.S.3
  • 7
    • 0036324753 scopus 로고    scopus 로고
    • An algorithm for finding protein DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
    • Liu,X.S., Brutlag,D.L. and Liu,J.S. (2002) An algorithm for finding protein DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. Nat. Biotechnol., 20, 835-839.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 835-839
    • Liu, X.S.1    Brutlag, D.L.2    Liu, J.S.3
  • 8
    • 1542376789 scopus 로고    scopus 로고
    • Eukaryotic regulatory element conservation analysis and identification using comparative genomics
    • Liu,Y., Liu,X.S., Wei,L., Altman,R.B. and Batzoglou,S. (2004) Eukaryotic regulatory element conservation analysis and identification using comparative genomics. Genome Res., 14, 451-458.
    • (2004) Genome Res. , vol.14 , pp. 451-458
    • Liu, Y.1    Liu, X.S.2    Wei, L.3    Altman, R.B.4    Batzoglou, S.5
  • 10
    • 0037453009 scopus 로고    scopus 로고
    • Integrating regulatory motif discovery and genome-wide expression analysis
    • Conlon,E.M., Liu,X.S., Lieb,J.D. and Liu,J.S. (2003) Integrating regulatory motif discovery and genome-wide expression analysis. Proc. Natl Acad. Sci. USA, 100, 3339-3344.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 3339-3344
    • Conlon, E.M.1    Liu, X.S.2    Lieb, J.D.3    Liu, J.S.4
  • 11
    • 3242877502 scopus 로고    scopus 로고
    • BioOptimizer: A bayesian scoring function approach to motif discovery
    • doi: 10.1093/bioinformatics/bth127
    • Jensen,S.T. and Liu,J.S. (2004) BioOptimizer: a bayesian scoring function approach to motif discovery. Bioinformatics, doi: 10.1093/bioinformatics/bth127
    • (2004) Bioinformatics
    • Jensen, S.T.1    Liu, J.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.