-
1
-
-
2542496713
-
Role of the trans-activation response element in dimerization of HIV-1 RNA
-
Andersen, E. S., S. A. Contera, B. Knudsen, C. K. Damgaard, F. Besenbacher, and J. Kjems. 2004. Role of the trans-activation response element in dimerization of HIV-1 RNA. J. Biol. Chem. 279:22243-22249.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 22243-22249
-
-
Andersen, E.S.1
Contera, S.A.2
Knudsen, B.3
Damgaard, C.K.4
Besenbacher, F.5
Kjems, J.6
-
2
-
-
11444253965
-
HIV-1 TAR RNA: The target of molecular interactions between the virus and its host
-
Bannwarth, S., and A. Gatignol. 2005. HIV-1 TAR RNA: the target of molecular interactions between the virus and its host. Curr. HIV Res. 3:61-71.
-
(2005)
Curr. HIV Res
, vol.3
, pp. 61-71
-
-
Bannwarth, S.1
Gatignol, A.2
-
3
-
-
14344260087
-
HIV-1 encoded candidate micro-RNAs and their cellular targets
-
Bennasser, Y., S. Y. Le, M. L. Yeung, and K. T. Jeang. 2004. HIV-1 encoded candidate micro-RNAs and their cellular targets. Retrovirology 1:43.
-
(2004)
Retrovirology
, vol.1
, pp. 43
-
-
Bennasser, Y.1
Le, S.Y.2
Yeung, M.L.3
Jeang, K.T.4
-
4
-
-
33748775175
-
HIV-1 TAR RNA subverts RNA interference in transfected cells through sequestration of TAR RNA-binding protein, TRBP
-
Bennasser, Y., M. L. Yeung, and K. T. Jeang. 2006. HIV-1 TAR RNA subverts RNA interference in transfected cells through sequestration of TAR RNA-binding protein, TRBP. J. Biol. Chem. 281:27674-27678.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 27674-27678
-
-
Bennasser, Y.1
Yeung, M.L.2
Jeang, K.T.3
-
5
-
-
0026528771
-
Structural features in TAR RNA of human and simian immunodeficiency viruses: A phylogenetic analysis
-
Berkhout, B. 1992. Structural features in TAR RNA of human and simian immunodeficiency viruses: a phylogenetic analysis. Nucleic Acids Res. 20:27-31.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 27-31
-
-
Berkhout, B.1
-
6
-
-
0034565217
-
Multiple biological roles associated with the repeat (R) region of the HIV-1 RNA genome
-
Berkhout, B. 2000. Multiple biological roles associated with the repeat (R) region of the HIV-1 RNA genome. Adv. Pharmacol. 48:29-73.
-
(2000)
Adv. Pharmacol
, vol.48
, pp. 29-73
-
-
Berkhout, B.1
-
7
-
-
0028910385
-
A conserved hairpin structure predicted for the poly(A) signal of human and simian immunodeficiency viruses
-
Berkhout, B., B. Klaver, and A. T. Das. 1995. A conserved hairpin structure predicted for the poly(A) signal of human and simian immunodeficiency viruses. Virology 207:276-281.
-
(1995)
Virology
, vol.207
, pp. 276-281
-
-
Berkhout, B.1
Klaver, B.2
Das, A.T.3
-
8
-
-
0024322804
-
Tat trans-activates the human immunodeficiency virus through a nascent RNA target
-
Berkhout, B., R. H. Silverman, and K. T. Jeang. 1989. Tat trans-activates the human immunodeficiency virus through a nascent RNA target. Cell 59:273-282.
-
(1989)
Cell
, vol.59
, pp. 273-282
-
-
Berkhout, B.1
Silverman, R.H.2
Jeang, K.T.3
-
9
-
-
0029120074
-
Requirements for DNA strand transfer during reverse transcription in mutant HIV-1 virions
-
Berkhout, B., J. van Wamel, and B. Klaver. 1995. Requirements for DNA strand transfer during reverse transcription in mutant HIV-1 virions. J. Mol. Biol. 252:59-69.
-
(1995)
J. Mol. Biol
, vol.252
, pp. 59-69
-
-
Berkhout, B.1
van Wamel, J.2
Klaver, B.3
-
10
-
-
0033529211
-
Recruitment of cyclin T1/P-TEFb to an HIV type 1 long terminal repeat promoter proximal RNA target is both necessary and sufficient for full activation of transcription
-
Bieniasz, P. D., T. A. Grdina, H. P. Bogerd, and B. R. Cullen. 1999. Recruitment of cyclin T1/P-TEFb to an HIV type 1 long terminal repeat promoter proximal RNA target is both necessary and sufficient for full activation of transcription. Proc. Natl. Acad. Sci. USA 96:7791-7796.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 7791-7796
-
-
Bieniasz, P.D.1
Grdina, T.A.2
Bogerd, H.P.3
Cullen, B.R.4
-
11
-
-
27944487541
-
Tat gets the "green" light on transcription initiation
-
Brady, J., and F. Kashanchi. 2005. Tat gets the "green" light on transcription initiation. Retrovirology 2:69.
-
(2005)
Retrovirology
, vol.2
, pp. 69
-
-
Brady, J.1
Kashanchi, F.2
-
12
-
-
0033038518
-
Importance of a 5′ stem-loop for longevity of papA mRNA in Escherichia coli
-
Bricker, A. L., and J. G. Belasco. 1999. Importance of a 5′ stem-loop for longevity of papA mRNA in Escherichia coli. J. Bacteriol. 181:3587-3590.
-
(1999)
J. Bacteriol
, vol.181
, pp. 3587-3590
-
-
Bricker, A.L.1
Belasco, J.G.2
-
13
-
-
4043072810
-
A conditionally replicating virus as a novel approach toward an HIV vaccine
-
Das, A. T., K. Verhoef, and B. Berkhout. 2004. A conditionally replicating virus as a novel approach toward an HIV vaccine. Methods Enzymol. 388:359-379.
-
(2004)
Methods Enzymol
, vol.388
, pp. 359-379
-
-
Das, A.T.1
Verhoef, K.2
Berkhout, B.3
-
14
-
-
2442475398
-
Viral evolution as a tool to improve the tetracycline-regulated gene expression system
-
Das, A. T., X. Zhou, M. Vink, B. Klaver, K. Verhoef, G. Marzio, and B. Berkhout. 2004. Viral evolution as a tool to improve the tetracycline-regulated gene expression system. J. Biol. Chem. 279:18776-18782.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 18776-18782
-
-
Das, A.T.1
Zhou, X.2
Vink, M.3
Klaver, B.4
Verhoef, K.5
Marzio, G.6
Berkhout, B.7
-
15
-
-
0035986640
-
A 5′ stem-loop and ribosome binding but not translation are important for the stability of Bacillus subtilis aprE leader mRNA
-
Hambraeus, G., K. Karhumaa, and B. Rutberg. 2002. A 5′ stem-loop and ribosome binding but not translation are important for the stability of Bacillus subtilis aprE leader mRNA. Microbiology 148:1795-1803.
-
(2002)
Microbiology
, vol.148
, pp. 1795-1803
-
-
Hambraeus, G.1
Karhumaa, K.2
Rutberg, B.3
-
16
-
-
0034110654
-
The human immunodeficiency virus type 1 TAR RNA upper stem-loop plays distinct roles in reverse transcription and RNA packaging
-
Harrich, D., C. W. Hooker, and E. Parry. 2000. The human immunodeficiency virus type 1 TAR RNA upper stem-loop plays distinct roles in reverse transcription and RNA packaging. J. Virol. 74:5639-5646.
-
(2000)
J. Virol
, vol.74
, pp. 5639-5646
-
-
Harrich, D.1
Hooker, C.W.2
Parry, E.3
-
17
-
-
0027328728
-
Determination of messenger RNA 5′-ends by reverse transcription of the cap structure
-
Hirzmann, J., D. Luo, J. Hahnen, and G. Hobom. 1993. Determination of messenger RNA 5′-ends by reverse transcription of the cap structure. Nucleic Acids Res. 21:3597-3598.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 3597-3598
-
-
Hirzmann, J.1
Luo, D.2
Hahnen, J.3
Hobom, G.4
-
18
-
-
0035875554
-
Mutations in the TAR hairpin affect the equilibrium between alternative conformations of the HIV-1 leader RNA
-
Huthoff, H., and B. Berkhout. 2001. Mutations in the TAR hairpin affect the equilibrium between alternative conformations of the HIV-1 leader RNA. Nucleic Acids Res. 29:2594-2600.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2594-2600
-
-
Huthoff, H.1
Berkhout, B.2
-
19
-
-
0034030611
-
Functional differences between the long terminal repeat transcriptional promoters of HIV-1 subtypes A through G
-
Jeeninga, R. E., M. Hoogenkamp, M. Armand-Ugon, M. de Baar, K. Verhoef, and B. Berkhout. 2000. Functional differences between the long terminal repeat transcriptional promoters of HIV-1 subtypes A through G. J. Virol. 74:3740-3751.
-
(2000)
J. Virol
, vol.74
, pp. 3740-3751
-
-
Jeeninga, R.E.1
Hoogenkamp, M.2
Armand-Ugon, M.3
de Baar, M.4
Verhoef, K.5
Berkhout, B.6
-
20
-
-
33749601616
-
Construction of doxycyline-dependent mini-HIV-1 variants for the development of a virotherapy against leukemias
-
Jeeninga, R. E., B. Jan, H. Van den Berg, and B. Berkhout. 2006. Construction of doxycyline-dependent mini-HIV-1 variants for the development of a virotherapy against leukemias. Retrovirology 3:64.
-
(2006)
Retrovirology
, vol.3
, pp. 64
-
-
Jeeninga, R.E.1
Jan, B.2
Van den Berg, H.3
Berkhout, B.4
-
21
-
-
0028304885
-
Evolution of a disrupted TAR RNA hairpin structure in the HIV-1 virus
-
Klaver, B., and B. Berkhout. 1994. Evolution of a disrupted TAR RNA hairpin structure in the HIV-1 virus. EMBO J. 13:2650-2659.
-
(1994)
EMBO J
, vol.13
, pp. 2650-2659
-
-
Klaver, B.1
Berkhout, B.2
-
22
-
-
0035932984
-
In vitro evolution of a highly replicating, doxycycline-dependent HIV for applications in vaccine studies
-
Marzio, G., K. Verhoef, M. Vink, and B. Berkhout. 2001. In vitro evolution of a highly replicating, doxycycline-dependent HIV for applications in vaccine studies. Proc. Natl. Acad. Sci. USA 98:6342-6347.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 6342-6347
-
-
Marzio, G.1
Verhoef, K.2
Vink, M.3
Berkhout, B.4
-
23
-
-
4544337311
-
A riboswitch regulates RNA dimerization and packaging in human immunodeficiency virus type 1 virions
-
Ooms, M., H. Huthoff, R. Russell, C. Liang, and B. Berkhout. 2004. A riboswitch regulates RNA dimerization and packaging in human immunodeficiency virus type 1 virions. J. Virol. 78:10814-10819.
-
(2004)
J. Virol
, vol.78
, pp. 10814-10819
-
-
Ooms, M.1
Huthoff, H.2
Russell, R.3
Liang, C.4
Berkhout, B.5
-
24
-
-
0029956642
-
Enhanced processivity of RNA polymerase II triggered by Tat-induced phosphorylation of its carboxy-terminal domain
-
Parada, C. A., and R. G. Roeder. 1996. Enhanced processivity of RNA polymerase II triggered by Tat-induced phosphorylation of its carboxy-terminal domain. Nature 384:375-378.
-
(1996)
Nature
, vol.384
, pp. 375-378
-
-
Parada, C.A.1
Roeder, R.G.2
-
25
-
-
0034142332
-
A compilation of cellular transcription factor interactions with the HIV-1 LTR promoter
-
Pereira, L. A., K. Bentley, A. Peeters, M. J. Churchill, and N. J. Deacon. 2000. A compilation of cellular transcription factor interactions with the HIV-1 LTR promoter. Nucleic Acids Res. 28:663-668.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 663-668
-
-
Pereira, L.A.1
Bentley, K.2
Peeters, A.3
Churchill, M.J.4
Deacon, N.J.5
-
26
-
-
15744404289
-
HIV-1 Tat stimulates transcription complex assembly through recruitment of TBP in the absence of TAFs
-
Raha, T., S. W. Cheng, and M. R. Green. 2005. HIV-1 Tat stimulates transcription complex assembly through recruitment of TBP in the absence of TAFs. PLoS Biol. 3:e44.
-
(2005)
PLoS Biol
, vol.3
-
-
Raha, T.1
Cheng, S.W.2
Green, M.R.3
-
27
-
-
0037062495
-
TAR RNA loop: A scaffold for the assembly of a regulatory switch in HIV replication
-
Richter, S., Y. H. Ping, and T. M. Rana. 2002. TAR RNA loop: a scaffold for the assembly of a regulatory switch in HIV replication. Proc. Natl. Acad. Sci. USA 99:7928-7933.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 7928-7933
-
-
Richter, S.1
Ping, Y.H.2
Rana, T.M.3
-
28
-
-
0029008023
-
The human immunodeficiency virus long terminal repeat includes a specialised initiator element which is required for Tat-responsive transcription
-
Rittner, K., M. J. Churcher, M. J. Gait, and J. Karn. 1995. The human immunodeficiency virus long terminal repeat includes a specialised initiator element which is required for Tat-responsive transcription. J. Mol. Biol. 248:562-580.
-
(1995)
J. Mol. Biol
, vol.248
, pp. 562-580
-
-
Rittner, K.1
Churcher, M.J.2
Gait, M.J.3
Karn, J.4
-
29
-
-
30644466345
-
Factor correction as a tool to eliminate between-session variation in replicate experiments: Application to molecular biology and retrovirology
-
Ruijter, J. M., H. H. Thygesen, O. J. Schoneveld, A. T. Das, B. Berkhout, and W. H. Lamers. 2006. Factor correction as a tool to eliminate between-session variation in replicate experiments: application to molecular biology and retrovirology. Retrovirology 3:2.
-
(2006)
Retrovirology
, vol.3
, pp. 2
-
-
Ruijter, J.M.1
Thygesen, H.H.2
Schoneveld, O.J.3
Das, A.T.4
Berkhout, B.5
Lamers, W.H.6
-
30
-
-
0035943707
-
Constitutively dead, conditionally live HIV-1 genomes. Ex vivo implications for a live virus vaccine
-
Smith, S. M., M. Khoroshev, P. A. Marx, J. Orenstein, and K. T. Jeang. 2001. Constitutively dead, conditionally live HIV-1 genomes. Ex vivo implications for a live virus vaccine. J. Biol. Chem. 276:32184-32190.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 32184-32190
-
-
Smith, S.M.1
Khoroshev, M.2
Marx, P.A.3
Orenstein, J.4
Jeang, K.T.5
-
31
-
-
24044495582
-
Specific roles of 5′ RNA secondary structures in stabilizing transcripts in chloroplasts
-
Suay, L., M. L. Salvador, E. Abesha, and U. Klein. 2005. Specific roles of 5′ RNA secondary structures in stabilizing transcripts in chloroplasts. Nucleic Acids Res. 33:4754-4761.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 4754-4761
-
-
Suay, L.1
Salvador, M.L.2
Abesha, E.3
Klein, U.4
-
32
-
-
18244423260
-
RNA recognition by HIV-1 Tat and Rev
-
Tan, R., A. Brodsky, J. R. Williamson, and A. D. Frankel. 1997. RNA recognition by HIV-1 Tat and Rev. Semin. Virol. 8:186-193.
-
(1997)
Semin. Virol
, vol.8
, pp. 186-193
-
-
Tan, R.1
Brodsky, A.2
Williamson, J.R.3
Frankel, A.D.4
-
33
-
-
0034608802
-
Exploring the sequence space for tetracycline dependent transcriptional activators: Novel mutations yield expanded range and sensitivity
-
Urlinger, S., U. Baron, M. Thellmann, M. T. Hasan, H. Bujard, and W. Hillen. 2000. Exploring the sequence space for tetracycline dependent transcriptional activators: novel mutations yield expanded range and sensitivity. Proc. Natl. Acad. Sci. USA 97:7963-7968.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 7963-7968
-
-
Urlinger, S.1
Baron, U.2
Thellmann, M.3
Hasan, M.T.4
Bujard, H.5
Hillen, W.6
-
34
-
-
0035163747
-
Strict control of human immunodeficiency virus type 1 replication by a genetic switch: Tet for Tat
-
Verhoef, K., G. Marzio, W. Hillen, H. Bujard, and B. Berkhout. 2001. Strict control of human immunodeficiency virus type 1 replication by a genetic switch: Tet for Tat. J. Virol. 75:979-987.
-
(2001)
J. Virol
, vol.75
, pp. 979-987
-
-
Verhoef, K.1
Marzio, G.2
Hillen, W.3
Bujard, H.4
Berkhout, B.5
-
35
-
-
0032548918
-
A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA
-
Wei, P., M. E. Garber, S.-M. Fang, W. H. Fisher, and K. A. Jones. 1998. A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA. Cell 92:451-462.
-
(1998)
Cell
, vol.92
, pp. 451-462
-
-
Wei, P.1
Garber, M.E.2
Fang, S.-M.3
Fisher, W.H.4
Jones, K.A.5
-
36
-
-
0038235935
-
The stem-loop region of the tobacco psbA 5′UTR is an important determinant of mRNA stability and translation efficiency
-
Zou, Z., C. Eibl, and H. U. Koop. 2003. The stem-loop region of the tobacco psbA 5′UTR is an important determinant of mRNA stability and translation efficiency. Mol. Genet. Genomics 269:340-349.
-
(2003)
Mol. Genet. Genomics
, vol.269
, pp. 340-349
-
-
Zou, Z.1
Eibl, C.2
Koop, H.U.3
|