메뉴 건너뛰기




Volumn 74, Issue 12, 2000, Pages 5639-5646

The human immunodeficiency virus type 1 TAR RNA upper stem-loop plays distinct roles in reverse transcription and RNA packaging

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

EID: 0034110654     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.74.12.5639-5646.2000     Document Type: Article
Times cited : (50)

References (40)
  • 1
    • 0028864394 scopus 로고
    • The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein
    • Aboul-ela, F., J. Karn, and G. Varani. 1995. The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein. J. Mol. Biol. 253:313-332.
    • (1995) J. Mol. Biol. , vol.253 , pp. 313-332
    • Aboul-Ela, F.1    Karn, J.2    Varani, G.3
  • 2
    • 0025266663 scopus 로고
    • Mutations of RNA and protein sequences involved in human immunodeficiency virus type 1 packaging result in production of noninfectious virus
    • Aldovini, A., and R. A. Young. 1990. Mutations of RNA and protein sequences involved in human immunodeficiency virus type 1 packaging result in production of noninfectious virus. J. Virol. 64:1920-1926.
    • (1990) J. Virol. , vol.64 , pp. 1920-1926
    • Aldovini, A.1    Young, R.A.2
  • 3
    • 0027479628 scopus 로고
    • Functional sites in the 5′ region of human immunodeficiency virus type 1 RNA form defined structural domains
    • Baudin, F., R. Marquet, C. Isel, J. L. Darlix, B. Ehresmann, and C. Ehresmann. 1993. Functional sites in the 5′ region of human immunodeficiency virus type 1 RNA form defined structural domains. J. Mol. Biol. 229:382-397.
    • (1993) J. Mol. Biol. , vol.229 , pp. 382-397
    • Baudin, F.1    Marquet, R.2    Isel, C.3    Darlix, J.L.4    Ehresmann, B.5    Ehresmann, C.6
  • 4
    • 0026093989 scopus 로고
    • Detailed mutational analysis of TAR RNA: Critical spacing between the bulge and loop recognition domains
    • Berkhout, B., and K. T. Jeang. 1991. Detailed mutational analysis of TAR RNA: critical spacing between the bulge and loop recognition domains. Nucleic Acids Res. 19:6169-6176.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6169-6176
    • Berkhout, B.1    Jeang, K.T.2
  • 6
    • 0027472426 scopus 로고
    • HIV-1 TAR RNA-binding proteins control TAT activation of translation in Xenopus oocytes
    • Braddock, M., R. Powell, A. D. Blanchard, A. J. Kingsman, and S. M. Kingsman. 1993. HIV-1 TAR RNA-binding proteins control TAT activation of translation in Xenopus oocytes. FASEB J. 7:214-222.
    • (1993) FASEB J. , vol.7 , pp. 214-222
    • Braddock, M.1    Powell, R.2    Blanchard, A.D.3    Kingsman, A.J.4    Kingsman, S.M.5
  • 7
    • 0032522280 scopus 로고    scopus 로고
    • NMR evidence for a base triple in the HIV-2 TAR C-G.C+ mutant-argininamide complex
    • Brodsky, A. S., H. A. Erlacher, and J. R. Williamson. 1998. NMR evidence for a base triple in the HIV-2 TAR C-G.C+ mutant-argininamide complex. Nucleic Acids Res. 26:1991-1995.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 1991-1995
    • Brodsky, A.S.1    Erlacher, H.A.2    Williamson, J.R.3
  • 8
    • 0032889011 scopus 로고    scopus 로고
    • Genetic dissociation of the encapsidation and reverse transcription functions in the 5′ R region of human immunodeficiency virus type 1
    • Clever, J. L., D. A. Eckstein, and T. G. Parslow. 1999. Genetic dissociation of the encapsidation and reverse transcription functions in the 5′ R region of human immunodeficiency virus type 1. J. Virol. 73:101-109.
    • (1999) J. Virol. , vol.73 , pp. 101-109
    • Clever, J.L.1    Eckstein, D.A.2    Parslow, T.G.3
  • 9
    • 0030940477 scopus 로고    scopus 로고
    • Mutant human immunodeficiency virus type 1 genomes with defects in RNA dimerization or encapsidation
    • Clever, J. L., and T. G. Parslow. 1997. Mutant human immunodeficiency virus type 1 genomes with defects in RNA dimerization or encapsidation. J. Virol. 71:3407-3414.
    • (1997) J. Virol. , vol.71 , pp. 3407-3414
    • Clever, J.L.1    Parslow, T.G.2
  • 10
    • 0029907152 scopus 로고    scopus 로고
    • The crystal structures of T. thermophilus lysyl-tRNA synthetase complexed with E. coli tRNA(Lys) and a T. thermophilus tRNA(Lys) transcript: Anticodon recognition and conformational changes upon binding of a lysyl-adenylate analogue
    • Cusack, S., A. Yaremchuk, and M. Tukalo. 1996. The crystal structures of T. thermophilus lysyl-tRNA synthetase complexed with E. coli tRNA(Lys) and a T. thermophilus tRNA(Lys) transcript: anticodon recognition and conformational changes upon binding of a lysyl-adenylate analogue. EMBO J. 15:6321-6334.
    • (1996) EMBO J. , vol.15 , pp. 6321-6334
    • Cusack, S.1    Yaremchuk, A.2    Tukalo, M.3
  • 11
    • 0031716161 scopus 로고    scopus 로고
    • The 5′ and 3′ TAR elements of human immunodeficiency virus exert effects at several points in the virus life cycle
    • Das, A. T., B. Klaver, and B. Berkhout. 1998. The 5′ and 3′ TAR elements of human immunodeficiency virus exert effects at several points in the virus life cycle. J. Virol. 72:9217-9223.
    • (1998) J. Virol. , vol.72 , pp. 9217-9223
    • Das, A.T.1    Klaver, B.2    Berkhout, B.3
  • 12
    • 0027220120 scopus 로고
    • Mapping of functionally important residues of a cysteine-histidine box in the human immunodeficiency virus type 1 nucleocapsid protein
    • Dorfman, T., J. Luban, S. P. Goff, W. A. Haseltine, and H. G. Gottlinger. 1993. Mapping of functionally important residues of a cysteine-histidine box in the human immunodeficiency virus type 1 nucleocapsid protein. J. Virol. 67:6159-6169.
    • (1993) J. Virol. , vol.67 , pp. 6159-6169
    • Dorfman, T.1    Luban, J.2    Goff, S.P.3    Haseltine, W.A.4    Gottlinger, H.G.5
  • 13
    • 0032546817 scopus 로고    scopus 로고
    • HIV-1 regulatory/accessory genes: Keys to unraveling viral and host cell biology
    • Emerman, M., and M. H. Malim. 1998. HIV-1 regulatory/accessory genes: keys to unraveling viral and host cell biology. Science 280:1880-1884.
    • (1998) Science , vol.280 , pp. 1880-1884
    • Emerman, M.1    Malim, M.H.2
  • 14
    • 0023876147 scopus 로고
    • HIV-1 tat trans-activation requires the loop sequence within tar
    • Feng, S., and E. C. Holland. 1988. HIV-1 tat trans-activation requires the loop sequence within tar. Nature 334:165-167.
    • (1988) Nature , vol.334 , pp. 165-167
    • Feng, S.1    Holland, E.C.2
  • 15
    • 0024454740 scopus 로고
    • Human immunodeficiency virus type 1 LTR TATA and TAR region sequences required for transcriptional regulation
    • Garcia, J. A., D. Harrich, E. Soultanakis, F. Wu, R. Mitsuyasu, and R. B. Gaynor. 1989. Human immunodeficiency virus type 1 LTR TATA and TAR region sequences required for transcriptional regulation. EMBO J. 8:765-778.
    • (1989) EMBO J. , vol.8 , pp. 765-778
    • Garcia, J.A.1    Harrich, D.2    Soultanakis, E.3    Wu, F.4    Mitsuyasu, R.5    Gaynor, R.B.6
  • 16
    • 0028025481 scopus 로고
    • Differential growth kinetics are exhibited by human immunodeficiency virus type 1 TAR mutants
    • Harrich, D., C. Hsu, E. Race, and R. B. Gaynor. 1994. Differential growth kinetics are exhibited by human immunodeficiency virus type 1 TAR mutants. J. Virol. 68:5899-5910.
    • (1994) J. Virol. , vol.68 , pp. 5899-5910
    • Harrich, D.1    Hsu, C.2    Race, E.3    Gaynor, R.B.4
  • 17
    • 0029075124 scopus 로고
    • Human immunodeficiency virus type 1 TAR element revertant viruses define RNA structures required for efficient viral gene expression and replication
    • Harrich, D., G. Mavankal, A. Mette-Snider, and R. B. Gaynor. 1995. Human immunodeficiency virus type 1 TAR element revertant viruses define RNA structures required for efficient viral gene expression and replication. J. Virol. 69:4906-4913.
    • (1995) J. Virol. , vol.69 , pp. 4906-4913
    • Harrich, D.1    Mavankal, G.2    Mette-Snider, A.3    Gaynor, R.B.4
  • 18
    • 0030957531 scopus 로고    scopus 로고
    • Tat is required for efficient HIV-1 reverse transcription
    • Harrich, D., C. Ulich, L. F. Garcia-Martinez, and R. B. Gaynor. 1997. Tat is required for efficient HIV-1 reverse transcription. EMBO J. 16:1224-1235.
    • (1997) EMBO J. , vol.16 , pp. 1224-1235
    • Harrich, D.1    Ulich, C.2    Garcia-Martinez, L.F.3    Gaynor, R.B.4
  • 19
    • 0029893132 scopus 로고    scopus 로고
    • A critical role for the TAR element in promoting efficient human immunodeficiency virus type 1 reverse transcription
    • Harrich, D., C. Ulich, and R. B. Gaynor. 1996. A critical role for the TAR element in promoting efficient human immunodeficiency virus type 1 reverse transcription. J. Virol. 70:4017-4027.
    • (1996) J. Virol. , vol.70 , pp. 4017-4027
    • Harrich, D.1    Ulich, C.2    Gaynor, R.B.3
  • 20
    • 0026647836 scopus 로고
    • The human immunodeficiency virus type 1 packaging signal and major splice donor region have a conserved stable secondary structure
    • Harrison, G. P., and A. M. Lever. 1992. The human immunodeficiency virus type 1 packaging signal and major splice donor region have a conserved stable secondary structure. J. Virol. 66:4144-4153.
    • (1992) J. Virol. , vol.66 , pp. 4144-4153
    • Harrison, G.P.1    Lever, A.M.2
  • 21
    • 0032922727 scopus 로고    scopus 로고
    • An intact TAR element and cytoplasmic localization are necessary for efficient packaging of human immunodeficiency virus type 1 genomic RNA
    • Helga-Maria, C., M. L. Hammarskjold, and D. Rekosh. 1999. An intact TAR element and cytoplasmic localization are necessary for efficient packaging of human immunodeficiency virus type 1 genomic RNA. J. Virol. 73:4127-4135.
    • (1999) J. Virol. , vol.73 , pp. 4127-4135
    • Helga-Maria, C.1    Hammarskjold, M.L.2    Rekosh, D.3
  • 22
    • 0028936075 scopus 로고
    • Initiation of reverse transcription of HIV-1: Secondary structure of the HIV-1 RNA/tRNA(3Lys) (template/primer)
    • Isel, C., C. Ehresmann, G. Keith, B. Ehresmann, and R. Marquet. 1995. Initiation of reverse transcription of HIV-1: secondary structure of the HIV-1 RNA/tRNA(3Lys) (template/primer). J. Mol. Biol. 247:236-250.
    • (1995) J. Mol. Biol. , vol.247 , pp. 236-250
    • Isel, C.1    Ehresmann, C.2    Keith, G.3    Ehresmann, B.4    Marquet, R.5
  • 23
    • 0032008548 scopus 로고    scopus 로고
    • Mutational analysis of the tRNA3Lys/HIV-1 RNA (primer/template) complex
    • Isel, C., G. Keith, B. Ehresmann, C. Ehresmann, and R. Marquet. 1998. Mutational analysis of the tRNA3Lys/HIV-1 RNA (primer/template) complex. Nucleic Acids Res. 26:1198-1204.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 1198-1204
    • Isel, C.1    Keith, G.2    Ehresmann, B.3    Ehresmann, C.4    Marquet, R.5
  • 24
    • 0030019943 scopus 로고    scopus 로고
    • Specific initiation and switch to elongation of human immunodeficiency virus type 1 reverse transcription require the post-transcriptional modifications of primer tRNA3Lys
    • Isel, C., J. M. Lanchy, S. F. Le Grice, C. Ehresmann, B. Ehresmann, and R. Marquet. 1996. Specific initiation and switch to elongation of human immunodeficiency virus type 1 reverse transcription require the post-transcriptional modifications of primer tRNA3Lys. EMBO J. 15:917-924.
    • (1996) EMBO J. , vol.15 , pp. 917-924
    • Isel, C.1    Lanchy, J.M.2    Grice, S.F.L.3    Ehresmann, C.4    Ehresmann, B.5    Marquet, R.6
  • 25
    • 0027331556 scopus 로고
    • Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription
    • Isel, C., R. Marquet, G. Keith, C. Ehresmann, and B. Ehresmann. 1993. Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription. J. Biol. Chem. 268:25269-25272.
    • (1993) J. Biol. Chem. , vol.268 , pp. 25269-25272
    • Isel, C.1    Marquet, R.2    Keith, G.3    Ehresmann, C.4    Ehresmann, B.5
  • 26
    • 0032855497 scopus 로고    scopus 로고
    • Multifaceted activities of the HIV-1 transactivator of transcription
    • Jeang, K. T., H. Xiao, and E. A. Rich. 1999. Multifaceted activities of the HIV-1 transactivator of transcription, Tat. J. Biol. Chem. 274:28837-28840.
    • (1999) Tat. J. Biol. Chem. , vol.274 , pp. 28837-28840
    • Jeang, K.T.1    Xiao, H.2    Rich, E.A.3
  • 27
    • 0028304885 scopus 로고
    • Evolution of a disrupted TAR RNA hairpin structure in the HIV-1 virus
    • Klaver, B., and B. Berkhout. 1994. Evolution of a disrupted TAR RNA hairpin structure in the HIV-1 virus. EMBO J. 13:2650-2659.
    • (1994) EMBO J. , vol.13 , pp. 2650-2659
    • Klaver, B.1    Berkhout, B.2
  • 28
    • 0017153117 scopus 로고
    • Synthesis of murine leukemia virus proteins associated with virions assembled in actinomycin D-treated cells: Evidence for persistence of viral messenger RNA
    • Levin, J. G., and M. J. Rosenak. 1976. Synthesis of murine leukemia virus proteins associated with virions assembled in actinomycin D-treated cells: evidence for persistence of viral messenger RNA. Proc. Natl. Acad. Sci. USA 73:1154-1158.
    • (1976) Proc. Natl. Acad. Sci. USA , vol.73 , pp. 1154-1158
    • Levin, J.G.1    Rosenak, M.J.2
  • 29
    • 9244219568 scopus 로고    scopus 로고
    • The human immunodeficiency virus type 1 encapsidation site is a multipartite RNA element composed of functional hairpin structures
    • Erratum, 71:858, 1997
    • McBride, M. S., and A. T. Panganiban. 1996. The human immunodeficiency virus type 1 encapsidation site is a multipartite RNA element composed of functional hairpin structures. J. Virol. 70:2963-2973. (Erratum, 71:858, 1997).
    • (1996) J. Virol. , vol.70 , pp. 2963-2973
    • McBride, M.S.1    Panganiban, A.T.2
  • 30
    • 0030912887 scopus 로고    scopus 로고
    • Efficient encapsidation of human immunodeficiency virus type 1 vectors and further characterization of cis elements required for encapsidation
    • McBride, M. S., M. D. Schwartz, and A. T. Panganiban. 1997. Efficient encapsidation of human immunodeficiency virus type 1 vectors and further characterization of cis elements required for encapsidation. J. Virol. 71: 4544-4554.
    • (1997) J. Virol. , vol.71 , pp. 4544-4554
    • McBride, M.S.1    Schwartz, M.D.2    Panganiban, A.T.3
  • 31
    • 0029817879 scopus 로고    scopus 로고
    • Charged amino acid residues of human immunodeficiency virus type 1 nucleocapsid p7 protein involved in RNA packaging and infectivity
    • Poon, D. T., J. Wu, and A. Aldovini. 1996. Charged amino acid residues of human immunodeficiency virus type 1 nucleocapsid p7 protein involved in RNA packaging and infectivity. J. Virol. 70:6607-6616.
    • (1996) J. Virol. , vol.70 , pp. 6607-6616
    • Poon, D.T.1    Wu, J.2    Aldovini, A.3
  • 32
    • 0026651395 scopus 로고
    • Conformation of the TAR RNA-arginine complex by NMR spectroscopy
    • Puglisi, J. D., R. Tan, B. J. Calnan, A. D. Frankel, and J. R. Williamson. 1992. Conformation of the TAR RNA-arginine complex by NMR spectroscopy. Science 257:76-80.
    • (1992) Science , vol.257 , pp. 76-80
    • Puglisi, J.D.1    Tan, R.2    Calnan, B.J.3    Frankel, A.D.4    Williamson, J.R.5
  • 33
    • 11944264616 scopus 로고
    • Direct evidence for translational regulation by leader RNA and Tat protein of human immunodeficiency virus type 1
    • SenGupta, D. N., B. Berkhout, A. Gatignol, A. M. Zhou, and R. H. Silverman. 1990. Direct evidence for translational regulation by leader RNA and Tat protein of human immunodeficiency virus type 1. Proc. Natl. Acad. Sci. USA 87:7492-7496.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 7492-7496
    • Sengupta, D.N.1    Berkhout, B.2    Gatignol, A.3    Zhou, A.M.4    Silverman, R.H.5
  • 34
    • 0033053593 scopus 로고    scopus 로고
    • Functional domains of Tat required for efficient human immunodeficiency virus type 1 reverse transcription
    • Ulich, C., A. Dunne, E. Parry, C. W. Hooker, R. B. Gaynor, and D. Harrich. 1999. Functional domains of Tat required for efficient human immunodeficiency virus type 1 reverse transcription. J. Virol. 73:2499-2508.
    • (1999) J. Virol. , vol.73 , pp. 2499-2508
    • Ulich, C.1    Dunne, A.2    Parry, E.3    Hooker, C.W.4    Gaynor, R.B.5    Harrich, D.6
  • 35
    • 0032548918 scopus 로고    scopus 로고
    • A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA
    • Wei, P., M. E. Garber, S. M. Fang, W. H. Fischer, and K. A. Jones. 1998. A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA. Cell 92:451-462.
    • (1998) Cell , vol.92 , pp. 451-462
    • Wei, P.1    Garber, M.E.2    Fang, S.M.3    Fischer, W.H.4    Jones, K.A.5
  • 36
    • 0029080295 scopus 로고
    • Specific binding of RNA polymerase II to the human immunodeficiency virus trans-activating region RNA is regulated by cellular cofactors and Tat
    • Wu-Baer, F., D. Sigman, and R. B. Gaynor. 1995. Specific binding of RNA polymerase II to the human immunodeficiency virus trans-activating region RNA is regulated by cellular cofactors and Tat. Proc. Natl. Acad. Sci. USA 92:7153-7157.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 7153-7157
    • Wu-Baer, F.1    Sigman, D.2    Gaynor, R.B.3
  • 37
    • 0031979908 scopus 로고    scopus 로고
    • Natural endogenous reverse transcription of HIV type 1
    • Zhang, H., G. Dornadula, and R. J. Pomerantz. 1998. Natural endogenous reverse transcription of HIV type 1. AIDS Res. Hum. Retroviruses 14(Suppl. 1):S93-S95.
    • (1998) AIDS Res. Hum. Retroviruses , vol.14 , Issue.SUPPL. 1
    • Zhang, H.1    Dornadula, G.2    Pomerantz, R.J.3
  • 38
    • 0031922810 scopus 로고    scopus 로고
    • Genetic analysis of the U5-PBS of a novel HIV-1 reveals multiple interactions between the tRNA and RNA genome required for initiation of reverse transcription
    • Zhang, Z., S. M. Kang, Y. Li, and C. D. Morrow. 1998. Genetic analysis of the U5-PBS of a novel HIV-1 reveals multiple interactions between the tRNA and RNA genome required for initiation of reverse transcription. RNA 4:394-406.
    • (1998) RNA , vol.4 , pp. 394-406
    • Zhang, Z.1    Kang, S.M.2    Li, Y.3    Morrow, C.D.4
  • 39
    • 0032551669 scopus 로고    scopus 로고
    • Genetic evidence of the interaction between tRNA(Lys,3) and U5 facilitating efficient initiation of reverse transcription by human immunodeficiency virus type 1
    • Zhang, Z., S. M. Kang, and C. D. Morrow. 1998. Genetic evidence of the interaction between tRNA(Lys,3) and U5 facilitating efficient initiation of reverse transcription by human immunodeficiency virus type 1. AIDS Res. Hum. Retroviruses 14:979-988.
    • (1998) AIDS Res. Hum. Retroviruses , vol.14 , pp. 979-988
    • Zhang, Z.1    Kang, S.M.2    Morrow, C.D.3
  • 40
    • 0024477261 scopus 로고
    • On finding all suboptimal foldings of an RNA molecule
    • Zuker, M. 1989. On finding all suboptimal foldings of an RNA molecule. Science 244:48-52.
    • (1989) Science , vol.244 , pp. 48-52
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.