메뉴 건너뛰기




Volumn 64, Issue 4, 2007, Pages 243-249

A novel method combining linkage disequilibrium information and imputed functional knowledge for tagSNP selection

Author keywords

Association studies; Factor analysis; Imputed functional score; LD structure; tagSNP

Indexed keywords

ARTICLE; COST; FACTORIAL ANALYSIS; GENE; GENE LINKAGE DISEQUILIBRIUM; GENETIC PROCEDURES; GENOTYPE; HUMAN; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 34447115232     PISSN: 00015652     EISSN: None     Source Type: Journal    
DOI: 10.1159/000104227     Document Type: Article
Times cited : (5)

References (23)
  • 1
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • The International HapMap Consortium
    • The International HapMap Consortium: A haplotype map of the human genome. Nature 2005;437:1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 2
    • 0035228946 scopus 로고    scopus 로고
    • Genotyping for human whole-genome scans: Past, present, and future
    • Weber JL, Broman KW: Genotyping for human whole-genome scans: past, present, and future. Adv Genet 2001;42:77-96.
    • (2001) Adv Genet , vol.42 , pp. 77-96
    • Weber, J.L.1    Broman, K.W.2
  • 3
    • 84984932946 scopus 로고    scopus 로고
    • Population genetics - making sense out of sequence
    • Chakravarti A: Population genetics - making sense out of sequence. Nat Genet 1999;21:56-60.
    • (1999) Nat Genet , vol.21 , pp. 56-60
    • Chakravarti, A.1
  • 4
    • 0032429154 scopus 로고    scopus 로고
    • A DNA polymorphism discovery resource for research on human genetic variation
    • Collins FS, Brooks LD, Chakravarti A: A DNA polymorphism discovery resource for research on human genetic variation. Genome Res 1998;8:1229-1231.
    • (1998) Genome Res , vol.8 , pp. 1229-1231
    • Collins, F.S.1    Brooks, L.D.2    Chakravarti, A.3
  • 5
    • 0029741063 scopus 로고    scopus 로고
    • The future of genetic studies of complex human diseases
    • Risch N, Merikangas K: The future of genetic studies of complex human diseases. Science 1996;273:1516-1517.
    • (1996) Science , vol.273 , pp. 1516-1517
    • Risch, N.1    Merikangas, K.2
  • 7
    • 2642529617 scopus 로고    scopus 로고
    • PromoLign: A database for upstream region analysis and SNPs
    • Zhao T, Chang LW, McLeod HL, Stormo GD: PromoLign: A database for upstream region analysis and SNPs. Hum Mutat 2004;23:534-539.
    • (2004) Hum Mutat , vol.23 , pp. 534-539
    • Zhao, T.1    Chang, L.W.2    McLeod, H.L.3    Stormo, G.D.4
  • 8
    • 0346373654 scopus 로고    scopus 로고
    • Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium
    • Carlson CS, Eberle MA, Rieder MJ, Yi Q, Kruglyak L, Nickerson DA: Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am J Hum Genet 2004;74:106-120.
    • (2004) Am J Hum Genet , vol.74 , pp. 106-120
    • Carlson, C.S.1    Eberle, M.A.2    Rieder, M.J.3    Yi, Q.4    Kruglyak, L.5    Nickerson, D.A.6
  • 9
    • 1842539516 scopus 로고    scopus 로고
    • A simple correction for multiple testing for single-nucleotide polymorphisms in linkage disequilibrium with each other
    • Nyholt DR: A simple correction for multiple testing for single-nucleotide polymorphisms in linkage disequilibrium with each other. Am J Hum Genet 2004;74:765-769.
    • (2004) Am J Hum Genet , vol.74 , pp. 765-769
    • Nyholt, D.R.1
  • 10
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • The International HapMap Consortium
    • The International HapMap Consortium: The International HapMap Project. Nature 2003;426:789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 12
    • 0037398519 scopus 로고    scopus 로고
    • How introns influence and enhance eukaryotic gene expression
    • Le Hir H, Nott A, Moore MJ: How introns influence and enhance eukaryotic gene expression. Trends Biochem Sci 2003;28:215-220.
    • (2003) Trends Biochem Sci , vol.28 , pp. 215-220
    • Le Hir, H.1    Nott, A.2    Moore, M.J.3
  • 14
    • 6344233909 scopus 로고    scopus 로고
    • Finding haplotype tagging SNPs by use of principal components analysis
    • Lin Z, Altman RB: Finding haplotype tagging SNPs by use of principal components analysis. Am J Hum Genet 2004;75;850-861.
    • (2004) Am J Hum Genet , vol.75 , pp. 850-861
    • Lin, Z.1    Altman, R.B.2
  • 15
    • 0035590060 scopus 로고    scopus 로고
    • An Overview of Analytic Rotation in Exploratory Factor Analysis
    • Browne MW: An Overview of Analytic Rotation in Exploratory Factor Analysis. Multivariate Behav Res 2001;36:11-150.
    • (2001) Multivariate Behav Res , vol.36 , pp. 11-150
    • Browne, M.W.1
  • 17
    • 0034781050 scopus 로고    scopus 로고
    • A simple correction for multiple comparisons in interval mapping genome scans
    • Cheverud JM: A simple correction for multiple comparisons in interval mapping genome scans. Heredity 2001;87:52-58.
    • (2001) Heredity , vol.87 , pp. 52-58
    • Cheverud, J.M.1
  • 18
    • 34447125340 scopus 로고    scopus 로고
    • Haplotype blocks, haplotype map, and haplotype mapping the utility of haplotype structure analysis in search for complex disease genes
    • Gu, CC, Abecasis, GR, Province, MA, Rao, DC: Haplotype blocks, haplotype map, and haplotype mapping the utility of haplotype structure analysis in search for complex disease genes. Genet Epidemiol 2002;23:285.
    • (2002) Genet Epidemiol , vol.23 , pp. 285
    • Gu, C.C.1    Abecasis, G.R.2    Province, M.A.3    Rao, D.C.4
  • 19
    • 0037370466 scopus 로고    scopus 로고
    • Phillips MS, Lawrence R, Sachidanandam R, Morris AP, Balding DJ, Donaldson MA, Studebaker JF, Ankener WM, Alfisi SV, Kuo FS, Camisa AL, Pazorov V, Scott KE, Carey BJ, Faith J, Katari G, Bhatti HA, Cyr JM, Derohannessian V, Elosua C, Forman AM, Grecco NM, Hock CR, Kuebler JM, Lathrop JA, Mockler MA, Nachtman EP, Restine SL, Varde SA, Hozza MJ, Gelfand CA, Broxholme J, Abecasis GR, Boyce-Jacino MT, Cardon LR: Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots. Nat Genet 2003;33:382-387.
    • Phillips MS, Lawrence R, Sachidanandam R, Morris AP, Balding DJ, Donaldson MA, Studebaker JF, Ankener WM, Alfisi SV, Kuo FS, Camisa AL, Pazorov V, Scott KE, Carey BJ, Faith J, Katari G, Bhatti HA, Cyr JM, Derohannessian V, Elosua C, Forman AM, Grecco NM, Hock CR, Kuebler JM, Lathrop JA, Mockler MA, Nachtman EP, Restine SL, Varde SA, Hozza MJ, Gelfand CA, Broxholme J, Abecasis GR, Boyce-Jacino MT, Cardon LR: Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots. Nat Genet 2003;33:382-387.
  • 20
    • 32144431911 scopus 로고    scopus 로고
    • An efficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria
    • Qin ZS, Gopalakrishnan S, Abecasis GR: An efficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria. Bioinformatics 2006;22:220-225.
    • (2006) Bioinformatics , vol.22 , pp. 220-225
    • Qin, Z.S.1    Gopalakrishnan, S.2    Abecasis, G.R.3
  • 21
    • 0347362608 scopus 로고    scopus 로고
    • Principal component analysis for selection of optimal SNP-sets that capture intragenic genetic variation
    • Horne BD, Camp NJ: Principal component analysis for selection of optimal SNP-sets that capture intragenic genetic variation. Genet Epidemiol 2004;26:11-21.
    • (2004) Genet Epidemiol , vol.26 , pp. 11-21
    • Horne, B.D.1    Camp, N.J.2
  • 23
    • 33845260536 scopus 로고    scopus 로고
    • Measuring marker information content by the ambiguity of block boundaries observed in dense SNP data
    • Gu CC, Yu K, Boerwinkle E: Measuring marker information content by the ambiguity of block boundaries observed in dense SNP data. Ann Hum Genet 2007;71:127-140.
    • (2007) Ann Hum Genet , vol.71 , pp. 127-140
    • Gu, C.C.1    Yu, K.2    Boerwinkle, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.