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Volumn 88, Issue 7, 2007, Pages 1992-2002

Hepatitis C virus internal ribosome entry site initiates protein synthesis at the authentic initiation codon in yeast

Author keywords

[No Author keywords available]

Indexed keywords

TRANS ACTING FACTOR;

EID: 34347330355     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.82782-0     Document Type: Article
Times cited : (11)

References (39)
  • 2
    • 0032126554 scopus 로고    scopus 로고
    • Functional analysis of the interaction between HCV 5′UTR and putative subunits of eukaryotic translation initiation factor eIF3
    • Buratti, E., Tisminetzky, S., Zotti, M. & Baralle, F. E. (1998). Functional analysis of the interaction between HCV 5′UTR and putative subunits of eukaryotic translation initiation factor eIF3. Nucleic Acids Res 26, 3179-3187.
    • (1998) Nucleic Acids Res , vol.26 , pp. 3179-3187
    • Buratti, E.1    Tisminetzky, S.2    Zotti, M.3    Baralle, F.E.4
  • 4
    • 18444412277 scopus 로고    scopus 로고
    • Csank, C., Costanzo, M. C., Hirschman, J., Hodges, P., Kranz, J. E., Mangan, M., O'Neill, K., Robertson, L. S., Skrzypek, M. S. & other authors (2002). Three yeast proteome databases: YPD, PombePD, and CalPD (MycoPathPD). Methods Enzymol 350, 347-373.
    • Csank, C., Costanzo, M. C., Hirschman, J., Hodges, P., Kranz, J. E., Mangan, M., O'Neill, K., Robertson, L. S., Skrzypek, M. S. & other authors (2002). Three yeast proteome databases: YPD, PombePD, and CalPD (MycoPathPD). Methods Enzymol 350, 347-373.
  • 6
    • 0036909118 scopus 로고    scopus 로고
    • The influence of viral coding sequences on pestivirus IRES activity reveals further parallels with translation initiation in prokaryotes
    • Fletcher, S. P., Ali, I. K., Kaminski, A., Digard, P. & Jackson, R. J. (2002). The influence of viral coding sequences on pestivirus IRES activity reveals further parallels with translation initiation in prokaryotes. RNA 8, 1558-1571.
    • (2002) RNA , vol.8 , pp. 1558-1571
    • Fletcher, S.P.1    Ali, I.K.2    Kaminski, A.3    Digard, P.4    Jackson, R.J.5
  • 7
    • 0035877795 scopus 로고    scopus 로고
    • Ribosomal protein S5 interacts with the internal ribosomal entry site of hepatitis C virus
    • Fukushi, S., Okada, M., Stahl, J., Kageyama, T., Hoshino, F. B. & Katayama, K. (2001). Ribosomal protein S5 interacts with the internal ribosomal entry site of hepatitis C virus. J Biol Chem 276, 20824-20826.
    • (2001) J Biol Chem , vol.276 , pp. 20824-20826
    • Fukushi, S.1    Okada, M.2    Stahl, J.3    Kageyama, T.4    Hoshino, F.B.5    Katayama, K.6
  • 8
    • 0036270543 scopus 로고    scopus 로고
    • Transformation of yeast by the Liac/ss carrier DNA/PEG method
    • Gietz, R. O. & Woods, R. A. (2002). Transformation of yeast by the Liac/ss carrier DNA/PEG method. Methods Enzymol 350, 87-96.
    • (2002) Methods Enzymol , vol.350 , pp. 87-96
    • Gietz, R.O.1    Woods, R.A.2
  • 9
    • 0036281527 scopus 로고    scopus 로고
    • Polycistronic gene expression in yeast versus cryptic promoter elements
    • Hecht, K., Bailey, J. E. & Minas, W. (2002). Polycistronic gene expression in yeast versus cryptic promoter elements. FEMS Yeast Res 2, 215-224.
    • (2002) FEMS Yeast Res , vol.2 , pp. 215-224
    • Hecht, K.1    Bailey, J.E.2    Minas, W.3
  • 10
    • 0035396727 scopus 로고    scopus 로고
    • Internal ribosome entry sites in eukaryotic mRNA molecules
    • Hellen, C. O. & Sarnow, P. (2001). Internal ribosome entry sites in eukaryotic mRNA molecules. Genes Dev 15, 1593-1612.
    • (2001) Genes Dev , vol.15 , pp. 1593-1612
    • Hellen, C.O.1    Sarnow, P.2
  • 11
    • 0000091608 scopus 로고    scopus 로고
    • Pathway and mechanism of initiation of protein synthesis
    • Edited by N. Sonenberg, J. W. B. Hershey & M. B. Mathews. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • Hershey, J. W. B. & Merrick, W. C. (2000). Pathway and mechanism of initiation of protein synthesis. In Translational Control of Gene Expression, pp. 33-88. Edited by N. Sonenberg, J. W. B. Hershey & M. B. Mathews. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
    • (2000) Translational Control of Gene Expression , pp. 33-88
    • Hershey, J.W.B.1    Merrick, W.C.2
  • 12
    • 0029949695 scopus 로고    scopus 로고
    • Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA
    • Honda, M., Brown, E. A. & Lemon, S. M. (1996). Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA. RNA 2, 955-968.
    • (1996) RNA , vol.2 , pp. 955-968
    • Honda, M.1    Brown, E.A.2    Lemon, S.M.3
  • 13
    • 0032544966 scopus 로고    scopus 로고
    • Involvement of the 5′ proximal coding sequences of hepatitis C virus with internal initiation of viral translation
    • Hwang, L. H., Hsieh, C. L., Yen, A., Chung, Y. L. & Chen, D. S. (1998). Involvement of the 5′ proximal coding sequences of hepatitis C virus with internal initiation of viral translation. Biochem Biophys Res Commun 252, 455-460.
    • (1998) Biochem Biophys Res Commun , vol.252 , pp. 455-460
    • Hwang, L.H.1    Hsieh, C.L.2    Yen, A.3    Chung, Y.L.4    Chen, D.S.5
  • 14
    • 0030993197 scopus 로고    scopus 로고
    • Translation-competent extracts from Saccharomyces cerevisiae: Effects of L-A RNA, 5′ cap, and 3′ poly(A) tail on translational efficiency of mRNAs
    • Iizuka, N. & Sarnow, P. (1997). Translation-competent extracts from Saccharomyces cerevisiae: effects of L-A RNA, 5′ cap, and 3′ poly(A) tail on translational efficiency of mRNAs. Methods 11, 353-360.
    • (1997) Methods , vol.11 , pp. 353-360
    • Iizuka, N.1    Sarnow, P.2
  • 15
    • 0028034493 scopus 로고
    • Cap-dependent and cap-independent translation by internal initiation of mRNAs in cell extracts prepared from Saccharomyces cerevisiae
    • Iizuka, N., Najits, L., Franzusoff, A. & Sarnow, P. (1994). Cap-dependent and cap-independent translation by internal initiation of mRNAs in cell extracts prepared from Saccharomyces cerevisiae. Mol Cell Biol 14, 7322-7330.
    • (1994) Mol Cell Biol , vol.14 , pp. 7322-7330
    • Iizuka, N.1    Najits, L.2    Franzusoff, A.3    Sarnow, P.4
  • 16
    • 0001688296 scopus 로고    scopus 로고
    • Comparative view of initiation site selection mechanisms
    • Edited by N. Sonenberg, J. W. B. Hershey & M. B. Mathews. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • Jackson, R. J. (2000). Comparative view of initiation site selection mechanisms. In Translational Control of Gene Expression, pp. 127-183. Edited by N. Sonenberg, J. W. B. Hershey & M. B. Mathews. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
    • (2000) Translational Control of Gene Expression , pp. 127-183
    • Jackson, R.J.1
  • 17
    • 0030455820 scopus 로고    scopus 로고
    • Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast
    • James, P., Halladay, J. & Craig, E. A. (1996). Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 144, 1425-1436.
    • (1996) Genetics , vol.144 , pp. 1425-1436
    • James, P.1    Halladay, J.2    Craig, E.A.3
  • 18
    • 0035260658 scopus 로고    scopus 로고
    • Mechanism of ribosome recruitment by hepatitis C IRES RNA
    • Kieft, J. S., Zhou, K., Jubin, R. & Doudna, J. A. (2001). Mechanism of ribosome recruitment by hepatitis C IRES RNA. RNA 7, 194-206.
    • (2001) RNA , vol.7 , pp. 194-206
    • Kieft, J.S.1    Zhou, K.2    Jubin, R.3    Doudna, J.A.4
  • 19
    • 0033932448 scopus 로고    scopus 로고
    • An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus
    • Kolupaeva, V. G, Pestova, T. V. & Hellen, C. U. (2000). An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus. J Virol 74, 6242-6250.
    • (2000) J Virol , vol.74 , pp. 6242-6250
    • Kolupaeva, V.G.1    Pestova, T.V.2    Hellen, C.U.3
  • 20
    • 33646186734 scopus 로고    scopus 로고
    • Initiation factor-independent translation mediated by the hepatitis C virus internal ribosome entry site
    • Lancaster, A. M., Jan, E. & Sarnow, P. (2006). Initiation factor-independent translation mediated by the hepatitis C virus internal ribosome entry site. RNA 12, 894-902.
    • (2006) RNA , vol.12 , pp. 894-902
    • Lancaster, A.M.1    Jan, E.2    Sarnow, P.3
  • 21
    • 0029058555 scopus 로고
    • Transcriptional regulation in the yeast GAL gene family:, a complex genetic network
    • Lohr, D., Venkov, P. & Zlatanova, J. (1995). Transcriptional regulation in the yeast GAL gene family:, a complex genetic network. FASEB J 9, 777-787.
    • (1995) FASEB J , vol.9 , pp. 777-787
    • Lohr, D.1    Venkov, P.2    Zlatanova, J.3
  • 22
    • 0034899176 scopus 로고    scopus 로고
    • The ribosome binding site of hepatitis C virus mRNA
    • Lytle, J. R., Wu, L. & Robertson, H. D. (2001). The ribosome binding site of hepatitis C virus mRNA. J Virol 75, 7629-7636.
    • (2001) J Virol , vol.75 , pp. 7629-7636
    • Lytle, J.R.1    Wu, L.2    Robertson, H.D.3
  • 24
    • 0036077344 scopus 로고    scopus 로고
    • Ribosomal proteins mediate the hepatitis C virus IRES-HeLa 40S interaction
    • Otto, G. A., Lukavsky, P. J., Lancaster, A. M., Sarnow, P. & Puglisi, J. D. (2002). Ribosomal proteins mediate the hepatitis C virus IRES-HeLa 40S interaction. RNA 8, 913-923.
    • (2002) RNA , vol.8 , pp. 913-923
    • Otto, G.A.1    Lukavsky, P.J.2    Lancaster, A.M.3    Sarnow, P.4    Puglisi, J.D.5
  • 25
    • 0033618341 scopus 로고    scopus 로고
    • Starved Saccharomyces cerevisiae cells have the capacity to support internal initiation of translation
    • Paz, I., Abramovitz, L. & Choder, M. (1999). Starved Saccharomyces cerevisiae cells have the capacity to support internal initiation of translation. J Biol Chem 274, 21741-21745.
    • (1999) J Biol Chem , vol.274 , pp. 21741-21745
    • Paz, I.1    Abramovitz, L.2    Choder, M.3
  • 26
    • 0344687352 scopus 로고    scopus 로고
    • Reinitiation and recycling are distinct processes occurring downstream of translation termination in yeast
    • Rajkowitsch, L, Vilela, C., Berthelot, K., Ramirez, C. V. & McCarthy, J. E. (2004). Reinitiation and recycling are distinct processes occurring downstream of translation termination in yeast. J Mol Biol 335, 71-85.
    • (2004) J Mol Biol , vol.335 , pp. 71-85
    • Rajkowitsch, L.1    Vilela, C.2    Berthelot, K.3    Ramirez, C.V.4    McCarthy, J.E.5
  • 28
    • 0029902840 scopus 로고    scopus 로고
    • Internal initiation of translation of hepatitis C virus RNA: The ribosome entry site is at the authentic initiation codon
    • Reynolds, J. E., Kaminski, A., Carroll, A. R., Clarke, B. E., Rowlands, D. J. & Jackson, R. J. (1996). Internal initiation of translation of hepatitis C virus RNA: the ribosome entry site is at the authentic initiation codon. RNA 2, 867-878.
    • (1996) RNA , vol.2 , pp. 867-878
    • Reynolds, J.E.1    Kaminski, A.2    Carroll, A.R.3    Clarke, B.E.4    Rowlands, D.J.5    Jackson, R.J.6
  • 29
    • 0029016111 scopus 로고
    • Almost the entire 5′ non-translated region of hepatitis C virus is required for cap-independent translation
    • Rijnbrand, R., Bredenbeek, P., van der Straaten, T., Whetter, L., Inchauspe, G., Lemon, S. & Spaan, W. (1995). Almost the entire 5′ non-translated region of hepatitis C virus is required for cap-independent translation. FEBS Lett 365, 115-119.
    • (1995) FEBS Lett , vol.365 , pp. 115-119
    • Rijnbrand, R.1    Bredenbeek, P.2    van der Straaten, T.3    Whetter, L.4    Inchauspe, G.5    Lemon, S.6    Spaan, W.7
  • 30
    • 0030560807 scopus 로고    scopus 로고
    • The influence of AUG codons in the hepatitis C virus 5′ nontranslated region on translation and mapping of the translation initiation window
    • Rijnbrand, R. C., Abbink, T. E., Haasnoot, P. C., Spaan, W. J. & Bredenbeek, P. J. (1996). The influence of AUG codons in the hepatitis C virus 5′ nontranslated region on translation and mapping of the translation initiation window. Virology 226, 47-56.
    • (1996) Virology , vol.226 , pp. 47-56
    • Rijnbrand, R.C.1    Abbink, T.E.2    Haasnoot, P.C.3    Spaan, W.J.4    Bredenbeek, P.J.5
  • 31
    • 0035004139 scopus 로고    scopus 로고
    • The influence of downstream protein-coding sequence on internal ribosome entry on hepatitis C virus and other flavivirus RNAs
    • Rijnbrand, R., Bredenbeek, P. J., Haasnoot, P. C., Kieft, J. S., Spaan, W. J. & Lemon, S. M. (2001). The influence of downstream protein-coding sequence on internal ribosome entry on hepatitis C virus and other flavivirus RNAs. RNA 7, 585-597.
    • (2001) RNA , vol.7 , pp. 585-597
    • Rijnbrand, R.1    Bredenbeek, P.J.2    Haasnoot, P.C.3    Kieft, J.S.4    Spaan, W.J.5    Lemon, S.M.6
  • 32
    • 0034055886 scopus 로고    scopus 로고
    • The promoter of the yeast INO4 regulatory gene: A model of the simplest yeast promoter
    • Robinson, K. A. & Lopes, J. M. (2000). The promoter of the yeast INO4 regulatory gene: a model of the simplest yeast promoter. J Bacteriol 182, 2746-2752.
    • (2000) J Bacteriol , vol.182 , pp. 2746-2752
    • Robinson, K.A.1    Lopes, J.M.2
  • 33
    • 23244462541 scopus 로고    scopus 로고
    • Hepatitis C virus internal ribosome entry site-dependent translation in Saccharomyces cerevisiae is independent of polypyrimidine tract-binding protein, poly(rC)-binding protein 2, and La protein
    • Rosenfeld, A. B. & Racaniello, V. R. (2005). Hepatitis C virus internal ribosome entry site-dependent translation in Saccharomyces cerevisiae is independent of polypyrimidine tract-binding protein, poly(rC)-binding protein 2, and La protein. J Virol 79, 10126-10137.
    • (2005) J Virol , vol.79 , pp. 10126-10137
    • Rosenfeld, A.B.1    Racaniello, V.R.2
  • 34
    • 0031901132 scopus 로고    scopus 로고
    • Specific interaction of eukaryotic translation initiation factor 3 with the 5′ nontranslated regions of hepatitis C virus and classical swine fever virus RNAs
    • Sizova, D. V., Kolupaeva, V. G., Pestova, T. V., Shatsky, I. N. & Hellen, C. U. (1998). Specific interaction of eukaryotic translation initiation factor 3 with the 5′ nontranslated regions of hepatitis C virus and classical swine fever virus RNAs. J Virol 72, 4775-4782.
    • (1998) J Virol , vol.72 , pp. 4775-4782
    • Sizova, D.V.1    Kolupaeva, V.G.2    Pestova, T.V.3    Shatsky, I.N.4    Hellen, C.U.5
  • 35
    • 0035831269 scopus 로고    scopus 로고
    • Hepatitis C virus IRES RNA-induced changes in the conformation of the 40S ribosomal subunit
    • Spahn, C. M., Kieft, J. S., Grassucci, R. A., Penczek, P. A., Zhou, K., Doudna, J. A. & Frank, J. (2001). Hepatitis C virus IRES RNA-induced changes in the conformation of the 40S ribosomal subunit. Science 291, 1959-1962.
    • (2001) Science , vol.291 , pp. 1959-1962
    • Spahn, C.M.1    Kieft, J.S.2    Grassucci, R.A.3    Penczek, P.A.4    Zhou, K.5    Doudna, J.A.6    Frank, J.7
  • 36
    • 0035818467 scopus 로고    scopus 로고
    • Internal initiation in Saccharomyces cerevisiae mediated by an initiator tRNA/eIF2-independent internal ribosome entry site element
    • Thompson, S. R., Gulyas, K. D. & Samow, P. (2001). Internal initiation in Saccharomyces cerevisiae mediated by an initiator tRNA/eIF2-independent internal ribosome entry site element. Proc Natl Acad Sci U S A 98, 12972-12977.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 12972-12977
    • Thompson, S.R.1    Gulyas, K.D.2    Samow, P.3
  • 37
    • 0026513651 scopus 로고
    • Internal ribosome entry site within hepatitis C virus RNA
    • Tsukiyama-Kohara, K., Iizuka, N., Kohara, M. & Nomoto, A. (1992). Internal ribosome entry site within hepatitis C virus RNA. J Virol 66, 1476-1483.
    • (1992) J Virol , vol.66 , pp. 1476-1483
    • Tsukiyama-Kohara, K.1    Iizuka, N.2    Kohara, M.3    Nomoto, A.4
  • 38
    • 0034469927 scopus 로고    scopus 로고
    • Core protein-coding sequence, but not core protein, modulates the efficiency of cap-independent translation directed by the internal ribosome entry site of hepatitis C virus
    • Wang, T. H., Rijnbrand, R. C. & Lemon, S. M. (2000). Core protein-coding sequence, but not core protein, modulates the efficiency of cap-independent translation directed by the internal ribosome entry site of hepatitis C virus. J Virol 74, 11347-11358.
    • (2000) J Virol , vol.74 , pp. 11347-11358
    • Wang, T.H.1    Rijnbrand, R.C.2    Lemon, S.M.3
  • 39
    • 0001320597 scopus 로고    scopus 로고
    • Mammalian ribosomes: The structure and the evolution of the proteins
    • Edited by J. W. B. Hershey, M. B. Mathews & N. Sonenberg. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • Wool, I. G., Chan, Y.-L. & Gluck, A. (1996). Mammalian ribosomes: the structure and the evolution of the proteins. In Translational Control, pp. 685-752. Edited by J. W. B. Hershey, M. B. Mathews & N. Sonenberg. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
    • (1996) Translational Control , pp. 685-752
    • Wool, I.G.1    Chan, Y.-L.2    Gluck, A.3


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