DNA-directed assembly of supramolecular fluorescent protein energy transfer systems

Bioconjugate Chemistry

Volumn 18, Issue 3, 2007, Pages 621-627

  Kukolka, Florian ^a   Schoeps, Oliver ^a   Woggon, Ulrike ^a   Niemeyer, Christof M ^a  

^a TU DORTMUND UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ENERGY TRANSFER; FLUOROPHORES; PROTEINS; SUPRAMOLECULAR CHEMISTRY;

BIO-MOLECULAR; DNA-DIRECTED ASSEMBLY; ENERGY-TRANSFER SYSTEMS; ENHANCED YELLOW FLUORESCENT PROTEINS; FLUORESCENCE RESONANCE ENERGY TRANSFER; FLUORESCENT PROTEIN; NANOMETER LENGTH SCALE; PHYSICOCHEMICAL PROPERTY; PRECISE POSITIONING; SELF ORGANIZATIONS;

FORSTER RESONANCE ENERGY TRANSFER;

ATTO647 DYE; DNA; ENHANCED YELLOW FLUORESCENT PROTEIN; FLUORESCENT DYE; UNCLASSIFIED DRUG; YELLOW FLUORESCENT PROTEIN;

ARTICLE; COMPLEX FORMATION; CONJUGATE; CONTROLLED STUDY; DNA STRUCTURE; ENERGY TRANSFER; FLUORESCENCE RESONANCE ENERGY TRANSFER; NANOTECHNOLOGY; OPTICS; PHOTOLUMINESCENCE; PHYSICAL CHEMISTRY; PROTEIN ASSEMBLY; SPECTROSCOPY; SUPRAMOLECULAR CHEMISTRY;

EID: 34347324158     PISSN: 10431802     EISSN: None     Source Type: Journal    
DOI: 10.1021/bc060143w     Document Type: Article

References (33)

1. Garcia-Parajo, M. F., Hernando, J., Sanchez, Mosteiro, G., Hoogenboom, J. P., van Dijk, E. M., and van Hulst, N. F. (2005) Energy transfer in single-molecule photonic wires. Chemphyschem 6, 819-827.
2. Choi, M. S., Yamazaki, T., Yamazaki, I., and Aida, T. (2004) Bioinspired molecular design of light-harvesting multiporphyrin arrays. Angew. Chem. Int. Ed. 43, 150-158.
3. Hammarstrom, L. (2003) Towards artificial photosynthesis: ruthenium-manganese chemistry mimicking photosystem II reactions. Curr. Opin. Chem. Biol. 7, 666-673.
4. Sykora, M., Maxwell, K. A., DeSimone, J. M., and Meyer, T. J. (2000) Mimicking the antenna-electron transfer properties of photosynthesis. Proc. Natl. Acad. Sci. U.S.A. 97, 7687-7691.
5. Hofkens, J., Cotlet, M., Vosch, T., Tinnefeld, P., Weston, K. D., Ego, C., Grimsdale, A., Müllen, K., Beljonne, D., and Brédas, J.-L. Jordens, S., Schweiter, G., Sauer, M., De Schryver, F. (2003) Revealing competitive Forster-type resonance energy-transfer pathways in single bichromophoric molecules. Proc. Natl. Acad. Sci. U.S.A. 100, 13146-13151.
6. Jordens, S., De Belder, G., Lor, M., Schweitzer, G., Van der Auweraer, M., Weil, T., Reuther, E., Mullen, K., and De Schryver, F. C. (2003) Energy transfer within perylene-terrylene dendrimers evidenced by polychromatic transient absorption measurements. Photochem. Photobiol. Sci. 2, 177-186.
7. Qu, J., Pschirer, N. G., Liu, D., Stefan, A., De Schryver, F. C., and Mullen, K. (2004) Dendronized perylenetetracarboxdiimides with peripheral triphenylamines for intramolecular energy and electron transfer. Chemistry 10, 528-537.
8. Weil, T., Reuther, E., Beer, C., and Mullen, K. (2004) Synthesis and characterization of dendritic multichromophores based on rylene dyes for vectorial transduction of excitation energy. Chemistry 10, 1398-1414.
9. Niemeyer, C. M., Sano, T., Smith, C. L., and Cantor, C. R. (1994) Oligonucleotide-directed self-assembly of proteins: Semisynthetic DNA-streptavidin hybrid molecules as connectors for the generation of macroscopic arrays and the construction of supramolecular bioconjugates. Nucl. Acids Res. 22, 5530-5539.
10. Alivisatos, A. P., Johnsson, K. P., Peng, X., Wilson, T. E., Loweth, C. J., Bruchez, M. P., Jr., and Schultz, P. G. (1996) Organization of 'nanocrystal molecules' using DNA. Nature (London) 382, 609-611.
11. Mirkin, C. A., Letsinger, R. L., Mucic, R. C., and Storhoff, J. J. (1996) A DNA-based method for rationally assembling nanoparticles into macroscopic materials. Nature (London) 382, 607-609.
12. Niemeyer, C. M. (2001) Nanoparticles, proteins, and nucleic acids: biotechnology meets materials science. Angew. Chem., Int. Ed. 40, 4128-4158.
13. Niemeyer, C. M., Koehler, J., and Wuerdemann, C. (2002) DNA-directed assembly of bienzymic complexes from in-vivo biotinylated NAD(P)H:FMN oxidoreductase and luciferase. ChemBioChem 3, 242-245.
14. Rosi, N. L., and Mirkin, C. A. (2005) Nanostructures in biodiagnostics. Chem. Rev. 105, 1547-1562.
15. Kawahara, S.-i., Uchimaru, T., and Murata, S. (1999) Sequential multistep energy transfer: enhancement of efficiency of long-range fluorescence resonance energy transfer. Chem. Commun. 563-564.
16. Ohya, Y., Yabuki, K., Hashimoto, M., Nakajima, A., and Ouchi, T. (2003) Multistep fluorescence resonance energy transfer in sequential chromophore array constructed on oligo-DNA assemblies. Bioconjugate Chem. 14, 1057-1066.
17. Ohya, Y., Nakajima, A., and Ouchi, T. (2005) Time-resolved laser spectroscopic analysis of multi-step fluorescence resonance energy transfer on chromophore array constructed oby oligo-DNA assembly. Supramol. Chem. 17, 283-289.
18. Heilemann, M., Tinnefeld, P., Sanchez Mosteiro, G., Garcia Parajo, M., Van Hulst, N. F., and Sauer, M. (2004) Multistep energy transfer in single molecular photonic wires. J. Am. Chem. Soc. 126, 6514-6515.
19. Vyawahare, S., Eyal, S., Mathews, K. D., and Quake, S. R. (2004) Nanometer-scale fluorescence resonance optical waveguides. Nano Lett. 4, 1035-1039.
20. Kukolka, F., and Niemeyer, C. M. (2004) Synthesis of fluorescent oligonucleotide-EYFP conjugate: towards supramolecular construction of semisynthetic biomolecular antennae. Org. Biomol. Chem. 2, 2203-2206.
21. Heim, R. (1999) Green fluorescent protein forms for energy transfer. Methods Enzymol. 302, 408-423.
22. Wiedenmann, J., Schenk, A., Rocker, C., Girod, A., Spindler, K. D., and Nienhaus, G. U. (2002) A far-red fluorescent protein with fast maturation and reduced oligomerization tendency from Entacmaea quadricolor (Anthozoa, Actinaria). Proc. Natl. Acad. Sci. U.S.A. 99, 11646-11651.
23. Fradkov, A. F., Chen, Y., Ding, L., Barsova, E. V., Matz, M. V., and Lukyanov, S. A. (2000) Novel fluorescent protein from Discosoma coral and its mutants possesses a unique far-red fluorescence. FEBS Lett. 479, 127-130.
24. Labas, Y. A., Gurskaya, N. G., Yanushevich, Y. G., Fradkov, A. F., Lukyanov, K. A., Lukyanov, S. A., and Matz, M. V. (2002) Diversity and evolution of the green fluorescent protein family. Proc. Natl. Acad. Sci. U.S.A. 99, 4256-4261.
25. Verkhusha, V. V., and Lukyanov, K. A. (2004) The molecular properties and applications of Anthozoa fluorescent proteins and chromoproteins. Nat. Biotechnol. 22, 289-296.
26. Cinelli, R. A. G., Pellegrini, V., Ferrari, A., Faraci, P., Nifosì, R., Tyagi, M., Giacca, M., and Beltram, F. (2001) Green fluorescent proteins as optically controllable elements in bioelectronics. Appl Phys. Lett. 79, 3353-3355.
27. Ando, R., Mizuno, H., and Miyawaki, A. (2004) Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting. Science 306, 1370-1373.
28. Dickson, R. M., Cubitt, A. B., Tsien, R. Y., and Moerner, W. E. (1997) On/off blinking and switching behaviour of single molecules of green fluorescent protein. Nature (London) 388, 355-358.
29. Mendel, D., Cornish, V. W., and Schultz, P. G. (1995) Site-directed mutagenesis with an expanded genetic code. Annu. Rev. Biophys. Biomol. Struct. 24, 435-462.
30. Kukolka, F., Mueller, B. K., Paternoster, S., Arndt, A., Niemeyer, C. M., Braeuchle, C., and Lamb, D. C. (2006) A single molecule FRET Analysis of fluorescent DNA-protein conjugates for nanobiotechnology. Small 2, 1083-1089.
31. Hagerman, P. J. (1988) Flexibility of DNA. Annu. Rev. Biophys. Chem. 17, 265-286.
32. Clegg, R. M., Murchie, A. I., Zechel, A., and Lilley, D. M. (1993) Observing the helical geometry of double-stranded DNA in solution by fluorescence resonance energy transfer. Proc. Natl. Acad. Sci. U.S.A. 90, 2994-2998.
33. Ormo, M., Cubitt, A. B., Kallio, K., Gross, L. A., Tsien, R. Y., and Remington, S. J. (1996) Crystal structure of the Aequorea victoria green fluorescent protein. Science 273, 1392-1395.