An archaeal protein with homology to the eukaryotic translation initiation factor 5A shows ribonucleolytic activity

Journal of Biological Chemistry

Volumn 282, Issue 19, 2007, Pages 13966-13976

  Wagner, Steffen ^a   Klug, Gabriele ^a,b  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b UNIVERSITY HOSPITAL GIESSEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BINDING SITES; ESCHERICHIA COLI; RNA; TRANSCRIPTION FACTORS;

BIOCHEMICAL TECHNIQUES; HALOBACTERIUM; HYPUSINATION; TRANSLATION INITIATION FACTOR;

ENZYME ACTIVITY;

ARCHAEAL PROTEIN; CHAPERONE; COLD SHOCK PROTEIN; INITIATION FACTOR 5A; MESSENGER RNA; NUCLEOTIDE; RIBONUCLEASE; ARCHAEAL RNA; DRUG DERIVATIVE; EIF-5A; HYPUSINE; INITIATION FACTOR; LIGAND; LYSINE; RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ANIMAL CELL; ARCHAEBACTERIUM; ARTICLE; CARBOXY TERMINAL SEQUENCE; ENZYME ACTIVITY; ESCHERICHIA COLI; EUKARYOTE; EUKARYOTIC CELL; GENE ACTIVITY; GENETIC IDENTIFICATION; HALOBACTERIUM; MOLECULAR GENETICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN MODIFICATION; PROTEIN PURIFICATION; RNA BINDING; RNA CLEAVAGE; RNA DEGRADATION; RNA PROCESSING; RNA SEQUENCE; SEQUENCE HOMOLOGY; TRANSLATION INITIATION; TURNOVER TIME; AMINO ACID SEQUENCE; CELL CULTURE; COMPARATIVE STUDY; CONFORMATION; GENE VECTOR; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; NUCLEOTIDE SEQUENCE; PROTEIN PROCESSING;

ARCHAEA; ESCHERICHIA COLI; EUKARYOTA; HALOBACTERIUM SP. NRC-1;

AMINO ACID SEQUENCE; ARCHAEAL PROTEINS; BASE SEQUENCE; CELLS, CULTURED; EUKARYOTIC CELLS; GENETIC VECTORS; HALOBACTERIUM; LIGANDS; LYSINE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PEPTIDE INITIATION FACTORS; PROTEIN PROCESSING, POST-TRANSLATIONAL; RIBONUCLEASES; RNA, ARCHAEAL; RNA, MESSENGER; RNA-BINDING PROTEINS; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 34347236172     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M701166200     Document Type: Article

References (58)

1. Xiao, S., Scott, F., Fierke, C. A., and Engelke, D. R. (2002) Annu. Rev. Biochem. 71, 165-189
2. Schiffer, S., Rosch, S., and Marchfelder, A. (2002) EMBO J. 21, 2769-2777
3. Tang, T. H., Rozhdestvensky, T. S., d'Orval, B. C., Bortolin, M. L., Huber, H., Charpentier, B., Branlant, C., Bachellerie, J. P., Brosius, J., and Huttenhofer, A. (2002) Nucleic Acids Res. 30, 921-930
4. Mitchell, P., Petfalski, E., Shevchenko, A., Mann, M., and Tollervey, D. (1997) Cell 91, 457-466
5. Farhoud, M. H., Wessels, H. J., Steenbakkers, P. J., Mattijssen, S., Wevers, R. A., van Engelen, B. G., Jetten, M. S., Smeitink, J. A., van den Heuvel, L. P., and Keltjens, J. T. (2005) Mol. Cell Proteomics 4, 1653-1663
6. Lorentzen, E., Walter, P., Fribourg, S., Evguenieva-Hackenberg, E., Klug, G., and Conti, E. (2005) Nat. Struct. Mol. Biol. 7, 575-581
7. Ramos, C. R., Oliveira, C. L., Torriani, I. L., and Oliveira, C. C. (2006) J. Biol. Chem. 281, 6751-6759
8. Evguenieva-Hackenberg, E., Walter, P., Hochleitner, E., Lottspeich, F., and Klug, G. (2003) EMBO Rep. 4, 889-893
9. Lorentzen, E., Walter, P., Fribourg, S., Evguenieva-Hackenberg, E., Klug, G., and Elena Conti, E. (2005) Nat. Struct. Mol. Biol. 12, 575-581
10. Portnoy, V., Evguenieva-Hackenberg, E., Klein, F., Walter, P., Lorentzen, E., Klug, G., and Schuster, G. (2005) EMBO Rep. 6, 1188-1193
11. van Hoof, A., Frischmeyer, P. A., Dietz, H. C., and Parker, R. (2002) Science 295, 2262-2264
12. Anderson, J. S., and Parker, R. P. (1998) EMBO J. 17, 1497-1506
13. Jäger, A., Samorski, R., Pfeifer, F., and Klug, G. (2002) Nucleic Acids Res. 30, 5436-5443
14. Jäger, S., Fuhrmann, O., Heck, C., Hebermehl, M., Schiltz, E., Rauhut, R., and Klug, G. (2001) Nucleic Acids Res. 29, 4581-4588
15. Carpousis, A. J. (2002) Biochem. Soc. Trans. 30, 150-155
16. Purusharth, R. I., Klein, F., Sulthana, S., Jager, S., Jagannadham, M. V., Evguenieva-Hackenberg, E., Ray, M. K., and Klug, G. (2005) J. Biol. Chem. 280, 14572-14578
17. Benne, R., Brown-Luedi, M. L., and Hershey, J. W. (1978) J. Biol. Chem. 253, 3070-3077
18. Caraglia, M., Marra, M., Giuberti, G., D'Alessandro, A. M., Budillon, A., del Prete, S., Lentini, A., Beninati, S., and Abbruzzese, A. (2001) Amino Acids 20, 91-104
19. Zuk, D., and Jacobson, A. (1998) EMBO J. 17, 2914-2925
20. Valentini, S. R., Casolari, J. M., Oliveira, C. C., Silver, P. A., and McBride, A. E. (2002) Genetics 160, 393-405
21. Xu, A., and Chen, K. Y. (2001) J. Biol. Chem. 276, 2555-2561
22. Chen, K. Y., and Liu, A. Y. (1997) Biol. Signals 6, 105-109
23. Park, M. H., Lee, Y. B., and Joe, Y. A. (1997) Biol. Signals 6, 115-123
24. Chen, K. Y., and Jao, D. L. (1999) J. Chinese Chem. Soc. 46, 727-734
25. Sasaki, K., Abid, M. R., and Miyazaki, M. (1996) FEBS Lett. 384, 151-154
26. Schnier, J., Schwelberger, H. G., Smit-Mcbride, Z., Kang, H. A., and Hershey, J. W. (1991) Mol. Cell. Biol. 11, 3105-3114
27. Xu, A., Jao, D. L., and Chen, K. Y. (2004) Biochem. J. 384, 585-590
28. Cline, S. W., Lam, W. L., Charlebois, R. L., Schalkwyk, L. C., and Doolittle, W. F. (1989) Can. J. Microbiol. 35, 148-152
29. Evguenieva-Hackenberg, E., and Klug, G. (2000) J. Bacteriol. 182, 4719-4729
30. Fritsch, J., Rothfuchs, R., Rauhut, R., and Klug, G. (1995) Mol. Mikrobiol. 15, 1017-1029
31. Zuker, M. (2003) Nucleic Acids Res. 31, 3406-3415
32. Walter, A. E., Turner, D. H., Kim, J., Lyttle, M. H., Muller, P., Mathews, D. H., and Zuker, M. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 9218-9222
33. Evguenieva-Hackenberg, E., Schiltz, E., and Klug, G. (2002) J. Biol. Chem. 277, 46145-46150
34. Hartmann, R. K., Bindereif, A., Schön, A., and Westhof, E. (2005) Handbook of RNA Biochemistry, Vol. 2, pp. 828-831, Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany
35. Robb, F. T., Sowers, K. R., DasSarma, S., Place, A. R., Schreier, H. J., and Fleischmann, E. M. (1995) Archaea: A Laboratory Manual. pp. 58-59, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
36. Kyrpides, N. C., Woese, C. R., and Ouzounis, C. A. (1996) Trends Biochem. Sci. 21, 425-426
37. Peat, T. S., Newman, J., Waldo, G. S., Berendzen, J., and Terwilliger, T. C. S. (1998) Structure 6, 1207-1214
38. Jiang, W., Hou, Y., and Inouye, M. (1997) J. Biol. Chem. 272, 196-202
39. Murzin, A. G. (1993) EMBO J. 12, 861-867
40. Christian, J. H. B., and Waltho, J. A. (1962) Biochim. Biophys. Acta 65, 506-508
41. Chen, K. Y., and Martynowicz, H. (1984) Biochem. Biophys. Res. Commun. 124, 423-429
42. Hoare, D. G., and Koshland, D. E. (1967) J. Biol. Chem. 242, 2447-2453
43. Takahashi, K. (1968) J. Biol. Chem. 243, 6171-6179
44. Gomi, T., and Fujioka, M. (1983) Biochemistry 22, 137-143
45. Miles, E. W. (1977) Methods Enzymol. 47, 431-442
46. Schierling, K., Rosch, S., Rupprecht, R., Schiffer, S., and Marchfelder, A. (2002) J. Mol. Biol. 316, 895-902
47. Zhang, Y., Zhang, J., Hara, H., Kato, I., and Inouye, M. (2005) J. Biol. Chem. 280, 3143-3150
48. Pellegrini, O., Mathy, N., Gogos, A., Shapiro, L., and Condon, C. (2005) Mol. Microbiol. 56, 1139-1148
49. Kamphuis, M. B., Bonvin, A. M., Monti, M. C., Lemonnier, M., Munoz-Gomez, A., van den Heuvel, R. H., Diaz-Orejas, R., and Boelens, R. (2006) J. Mol. Biol. 357, 115-126
50. Zhang, Y., Zhang, J., Hoeflich, K. P., Ikura, M., Qing, G., and Inouye, M. (2003) Mol Cell. 12, 913-923
51. Munoz-Gomez, A. J., Santos-Sierra, S., Berzal-Herranz, A., Lemonnier, M., and Diaz-Orejas, R. (2004) FEBS Lett. 567, 316-320
52. Kim, K. K., Hung, L. W., Yokota, H., Kim, R., and Kim, S. H. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 10419-10424
53. Yao, M., Ohsawa, A., Kikukawa, S., Tanaka, I., and Kimura, M. (2003) J. Biochem. (Tokyo) 133, 75-81
54. Kay, B. K., Williamson, M. P., and Sudol, M. (2000) FASEB J. 14, 231-241
55. Kristensen, O., Guenat, S., Dar, I., Allaman-Pillet, N., Abderrahmani, A., Ferdaoussi, M., Roduit, R., Maurer, F., Beckmann, J. S., Kastrup, J. S., Gajhede, M., and Bonny, C. (2006) EMBO J. 25, 785-797
56. Bartig, D., Schümann, H., and Klink, F. (1990) Syst. Appl. Microbiol. 13, 112-116
57. Jansson, B. P., Malandrin, L., and Johansson, H. E. (2000) J. Bacteriol. 182, 1158-1161
58. Guex, N., and Peitsch, M. C. (1997) Electrophoresis 18, 2714-2723