An immuno-PF2D-MS/MS proteomic approach for bacterial antigenic characterization: To Bacillus and beyond

Journal of Proteome Research

Volumn 6, Issue 6, 2007, Pages 2168-2175

  Ruelle, Virginie ^a   Falisse Poirrier, Nandini ^a   ElMoualij, Benaissa ^a   Zorzi, Danièle ^a   Pierard, Olivier ^a   Heinen, Ernst ^a   De Pauw, Edwin ^a   Zorzi, Willy ^a  

^a UNIVERSITY OF LIÈGE   (Belgium)

Author keywords

Bacillus subtilis; Flagellin; In gel digest; Mass spectrometry; PF2D

Indexed keywords

BACTERIAL ANTIGEN; FLAGELLIN; POLYCLONAL ANTIBODY; PROTEIN HYDROLYSATE;

ARTICLE; BACILLUS SUBTILIS; CONTROLLED STUDY; ELECTRON MICROSCOPY; FLOW CYTOMETRY; HYDROPHOBICITY; IMMUNOLOGICAL PROCEDURES; ISOELECTRIC POINT; MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; WESTERN BLOTTING;

AMINO ACID SEQUENCE; ANTIBODIES, BACTERIAL; ANTIGENS, BACTERIAL; BACILLUS SUBTILIS; BLOTTING, WESTERN; HYDROPHOBICITY; IMMUNE SERA; ISOELECTRIC POINT; MASS SPECTROMETRY; MICROSCOPY, ELECTRON; MOLECULAR SEQUENCE DATA; PROTEOMICS;

BACILLUS (BACTERIUM); BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS);

EID: 34250793408     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr060661g     Document Type: Article

References (38)

1. Liolios, K.; Tavernarakis, N.; Hugenholtz, P.; Kyrpides, N. C. The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Res. 2006, 34, D332-D334.
2. Perez, J. M.; Cavalli, P.; Roure, C.; Renac, R.; Gille, Y.; Freydiere, A. M. Comparison of four chromogenic media and hektoen agar for detection and presumptive identification of Salmonella strains in human stools. J. Clin. Microbiol. 2003, 41, 1130-1134.
3. Prescott, L. M.; Harley, J. P.; Klein, D. A. Clinical microbiology in Microbiology WCB; McGraw-Hill: Boston, 1999.
4. Deisingh, A. K.; Thompson, M. Detection of infectious and toxigenic bacteria. Analyst 2002, 127, 567-581.
5. Steinmetz, I.; Rheinheimer, C.; Hubner, I.; Bitter-Suermann, D. Genus-specific epitope on the 60-kilodalton Legionella heat shock protein recognized by a monoclonal antibody. J. Clin. Microbiol. 1991, 29, 346-354.
6. Levasseur, S.; Husson, M. O.; Leitz, R.; Merlin, F.; Laurent, F.; Peladan, F.; Drocourt, J. L.; Leclerc, H.; Van Hoegaerden, M. Rapid detection of members of the family Enterobacteriaceae by a monoclonal antibody. Appl. Environ. Microbiol. 1992, 58, 1524-1529.
7. Faude, U. C.; Hofle, M. G. Development and application of monoclonal antibodies for in situ detection of indigenous bacterial strains in aquatic ecosystems. Appl. Environ. Microbiol. 1997, 63, 4534-4542.
8. Asano, Y.; Akaishi, E.; Tajima, K.; Shinozawa, T. Establishment of monoclonal antibodies specific for Bacillus subtilis DB9011. Biosci. Biotechnol. Biochem. 2000, 64, 652-656.
9. Teitelbaum, D.; Aharoni, R.; Sela, M.; Arnon, R. Cross-reactions and specificities of monoclonal antibodies against myelin basic protein and against the synthetic copolymer 1. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 9528-9532.
10. Klade, C. S. Proteomics approaches towards antigen discovery and vaccine development. Curr. Opin. Mol. Ther. 2002, 4, 216-223.
11. Falisse-Poirrier, N.; Ruelle, V.; Elmoualij, B.; Zorzi, D.; Pierard, O.; Heinen, E.; De Pauw, E.; Zorzi, W. Advances in immunoproteomics for serological characterization of microbial antigens. J. Microbiol. Methods 2006, 67, 593-596.
12. Stoscheck, C. M. Quantitation of protein. Methods Enzymol. 1990, 182, 50-68.
13. Shevchenko, A.; Wilm, M.; Vorm, O.; Mann, M. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal. Chem. 1996, 68, 850-858.
14. Douette, P.; Gerkens, P.; Navet, R.; Leprince, P.; De Pauw, E.; Sluse, F. E. Uncoupling protein 1 affects the yeast mitoproteome and oxygen free radical production. Free Radic. Biol. Med. 2006, 40, 303-315.
15. Nelson, P. N.; Reynolds, G. M.; Waldron, E. E.; Ward, E.; Giannopoulos, K.; Murray, P. G. Monoclonal antibodies. J. Clin. Pathol. Mol. Pathol. 2000, 53, 111-117.
16. Jungblut, P. R. Proteome analysis of bacterial pathogens. Microbes. Infect. 2001, 3, 831-840.
17. Klade, C. S.; Voss, T.; Krystek, E.; Ahorn, H.; Zatloukal, K.; Pummer, K.; Adolf, G. R. Identification of tumor antigens in renal cell carcinoma by serological proteome analysis. Proteomics 2001, 1, 890-898.
18. Vytvytska, O.; Nagy, E.; Bluggel, M.; Meyer, H. E.; Kurzbauer, R.; Huber, L. A.; Klade, C. S. Identification of vaccine candidate antigens of Staphylococcus aureus by serological proteome analysis. Proteomics 2002, 2, 580-590.
19. Corti, V.; Cattaneo, A.; Bachi, A.; Rossi, R. E.; Monasterolo, G.; Paolucci, C.; Burastero, S. E.; Alessio, M. Identification of grass pollen allergens by two-dimensional gel electrophoresis and serological screening. Proteomics 2005, 5, 729-736.
20. Fathman, C. G.; Soares, L.; Chan, S. M.; Utz, P. J. An array of possibilities for the study of autoimmunity. Nature 2005, 435, 605-611.
21. Sheng, S.; Chen, D.; Van Eyk, J. E. Multidimensional liquid chromatography separation of intact proteins by chromatographic focusing and reversed phase of the human serum proteome: optimization and protein database. Mol. Cell Proteomics 2006, 5, 26-34.
22. Lubman, D. M.; Kachman, M. T.; Wang, H.; Gong, S.; Yan, F.; Hamler, R. L.; O'Neil, K. A.; Zhu, K.; Buchanan, N. S.; Barder, T. J. Two-dimensional liquid separations-mass mapping of proteins from human cancer cell lysates. J. Chromatogr. B: Analyt. Technol. Biomed. Life Sci. 2002, 782, 183-196.
23. Yan, F.; Sreekumar, A.; Laxman, B.; Chinnaiyan, A. M.; Lubman, D. M.; Barder, T. J. Protein microarrays using liquid phase fractionation of cell lysates. Proteomics 2003, 3, 1228-1235.
24. Soldi, M.; Sarto, C.; Valsecchi, C.; Magni, F.; Proserpio, V.; Ticozzi, D.; Mocarelli, P. Proteome profile of human urine with two-dimensional liquid phase fractionation. Proteomics 2005, 5, 2641-2647.
25. Wang, Y.; Wu, R.; Cho, K. R.; Shedden, K. A.; Barder, T. J.; Lubman, D. M. Classification of cancer cell lines using an automated two-dimensional liquid mapping method with hierarchical clustering techniques. Mol. Cell Proteomics 2006, 5, 43-52.
26. Macnab, R. M. Genetics and biogenesis of bacterial flagella. Annu. Rev. Genet. 1992, 26, 131-158.
27. Wilson, D. R.; Beveridge, T. J. Bacterial flagellar filaments and their component flagellins. Can. J. Microbiol. 1993, 39, 451-472.
28. Winstanley, C.; Morgan, J. A. The bacterial flagellin gene as a biomarker for detection, population genetics and epidemiological analysis. Microbiol. 1997, 143 (Pt 10), 3071-3084.
29. Penn, C. W.; Luke, C. J. Bacterial flagellar diversity and significance in pathogenesis. FEMS Microbiol. Lett. 1992, 79, 331-336.
30. Whittam, T. S. Population Genetics of Bacteria; Society for General Microbiology Symposium; Cambridge University Press: Cambridge, 1995.
31. Oyofo, B. A.; Rollins, D. M. Efficacy of filter types for detecting Campylobacter jejuni and Campylobacter coli in environmental water samples by polymerase chain reaction. Appl. Environ. Microbiol. 1993, 59, 4090-4095.
32. Kauffmann, F. The world problem of Salmonellosis (Das Kauffmann-White-Schema); Dr. W. Junk Publishers: The Hague, The Netherlands, 1964.
33. Bouvet, J.; Vernozy-Rozand, C. Genetic methods for detection of verocytotoxin-producing Escherichia coli (VTEC) and Escherichia coli O157:H7 in food. Revue Med. Vet. 2000, 151, 907-914.
34. Asano, Y.; Onishi, H.; Tajima, K.; Shinozawa, T. Flagellin as a biomarker for Bacillus subtilis strains; application to the DB9011 strain and the study of interspecific diversity in amino-acid sequences. Biosci. Biotechnol. Biochem. 2001, 65, 1218-1222.
35. Lodes, M. J.; Cong, Y. Z.; Elson, C. O.; Mohamath, R.; Landers, C. J.; Targan, S. R.; Fort, M.; Hershberg, R. M. Bacterial flagellin is a dominant antigen in Crohn disease. J. Clin. Invest. 2004, 113, 1296-1306.
36. Anders, H. J.; Zecher, D.; Pawar, R. D.; Patole, P. S. Molecular mechanisms of autoimmunity triggered by microbial infection. Arthritis Res. Ther. 2005, 7, 215-224.
37. Qiu, D.; Fujita, K.; Sakuma, Y.; Tanaka, T.; Ohashi, Y.; Ohshima, H.; Tomita, M.; Itaya, M. Comparative analysis of physical maps of four Bacillus subtilis (natto) genomes. Appl. Environ. Microbiol. 2004, 70, 6247-6256.
38. Emerson, S. U.; Simon, M. I. Variation in the primary structure of Bacillus subtilis flagellins. J. Bacteriol. 1971, 106, 949-954.