The sister group relation of Parmeliaceae (Lecanorales, Ascomycota)

Mycologia

Volumn 99, Issue 1, 2007, Pages 42-49

  Arup, Ulf ^a   Ekman, Stefan ^b   Grube, Martin ^c   Mattsson, Jan Eric ^d   Wedin, Mats ^e  

^a LUND UNIVERSITY   (Sweden)

^b UNIVERSITY OF BERGEN   (Norway)

^c UNIVERSITY OF GRAZ   (Austria)

^d School of Life Sciences Södertörn University   (Sweden)

^e SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

Author keywords

DNA; Gypsoplaca; Lecanorales; Molecular; mrSSU; nrLSU; Phylogeny; Protoparmelia

Indexed keywords

FUNGAL DNA; RIBOSOME DNA; RNA 18S; RNA 28S;

LICHEN; MITOCHONDRIAL DNA; MOLECULAR ANALYSIS; PHYLOGENY; TAXONOMY;

ARTICLE; ASCOMYCETES; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY;

ASCOMYCOTA; CLUSTER ANALYSIS; DNA, FUNGAL; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 18S; RNA, RIBOSOMAL, 28S; SEQUENCE ANALYSIS, DNA;

ANZIACEAE; ASCOMYCOTA; GYPSOPLACA; JAPEWIA; LECANORALES; MYCOBLASTUS; PARMELIACEAE; PROTOPARMELIA; TEPHROMELA;

EID: 34250709085     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/mycologia.99.1.42     Document Type: Article

References (41)

1. Andersen HL, Ekman S. 2004. Phylogeny of the Micareaceae inferred from nrSSU DNA sequences. Lichenologist 36:27-35.
2. Articus K. 2004. Phylogenetic studies in Usnea (Parmeliaceae) and allied genera. Comp Summ Uppsala Dissert Fac Sci Technol 931:1-29.
3. Blanco O, Crespo A, Elix JA. 2004a. A molecular phylogeny and a new classification of parmelioid lichens containing Xanthoparmelia-type lichenan (Ascomycota: Lecanorales). Taxon 53:959-975.
4. _, Divakar PK. 2004b. Melanelixia and Melanohalea, two new genera segregated from Melanelia (Parmeliaceae) based on molecular and morphological data. Mycol Res 108:873-884.
5. _, Elix JA, Lumbsch HT. 2005. Molecular phylogeny of parmotremoid lichens (Ascomycota, Parmeliaceae). Mycologia 97:150-159.
6. De Queiroz A. 1993. For consensus (sometimes). Syst Biol 42:368-372.
7. Döring H, Clerc P, Grube M, Wedin M. 2000. Mycobiont-specific PCR primers for the amplification of nuclear ITS and LSU rDNA from lichenized ascomycetes. Lichenologist 32:200-204.
8. Ekman S, Wedin M. 2000. The phylogeny of the families Lecanoraceae and Bacidiaceae (lichenized Ascomycota) inferred from nuclear SSU rDNA sequences. Plant Biol 2:350-360.
9. Eriksson OE, ed. 2006. Outline of Ascomycota - 2006. Myconet 12:1-82.
10. _, Hawksworth DL. 1989. Notes on ascomycete systematics - Nos. 804-888. System Ascomycet 8:59-86.
11. _. 1995. Notes on ascomycete systematics - Nos. 1885-2023. System Ascomycet 14:41-77.
12. Hafellner J. 1984. Studien in Richtung einer naturlicheren Gliederung der Sammelfamilien Lecanoraceae und Lecideaceae. Beih Nova Hedw 79:241-371.
13. _, Rambold G, Timdal E. 1994. Discussion 4. Lecanorales. In: Hawksworth DL, ed. Ascomycete Systematics. Problems and perspective in the nineties. NATO Advanced Science Institute Series. New York: Plenum Press. p 379-387.
14. Henssen A. 1995. Apothecial structure and development in Protoparmelia badia Parmeliaceae s. lat. In: Daniëls FJA, Schulz M, Peine J, eds. Flechten Follmann. Contributions to lichenology in honor of Gerhard Follmann. Geobotanical and Phytotaxonomical Study Group. Cologne: Botanical Institute, University of Cologne. p 55-62.
15. _, Jahns HM. 1973. Lichenes. Eine Einführung in die Flechtenkunde. Stuttgart: Thieme-Verlag. p 1-467.
16. Hertel H. 1984. Über saxicole, lecideoide Flechten der Subantarctis. Beih Nova Hedw 79:399-500.
17. Huelsenbeck JP, Rannala B. 2005. Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Syst Biol 53:904-913.
18. Kärnefelt EI, Emanuelsson K, Thell A. 1998. Anatomy and systematics of usneoid genera in the Parmeliaceae. Nova Hedw 67:71-92.
19. Lindemuth R, Wirtz N, Lumbsch HT. 2001. Phylogenetic analysis of nuclear and mitochondrial rDNA sequences supports the view that loculoascomycetes Ascomycota. are not monophyletic. Mycol Res 105:1176-1181.
20. Lücking R, Stuart BL, Lumbsch HT. 2004. Phylogenetic relationships of Gomphillaceae and Asterothyriaceae: evidence from a combined Bayesian analysis of nuclear and mitochondrial sequences. Mycologia 96:283-294.
21. Lumbsch HT, Schmitt I, Palice Z, Wiklund E, Ekman S, Wedin M. 2004. Supraordinal phylogenetic relationships of Lecanoromycetes based on a Bayesian analysis of combined nuclear and mitochondrial sequences. Mol Phyl Evol 31:822-832.
22. Mattsson J-E, Wedin M. 1998. Phylogeny of the Parmeliaceae - DNA data versus morphological data. Lichenologist 30:463-472.
23. _. 1999. A re-assessment of the family Alectoriaceae. Lichenologist 31:431-440.
24. Miadlikowska J, Lutzoni F. 2000. Phylogenetic revision of the genus Peltigera (lichen-formning Ascomycota) based on morphological, chemical, and large subunit nuclear ribosomal DNA data. Int J Plant Sci 161:925-958.
25. Minin V, Abdo Z, Joyce P, Sullivan J. 2003. Performance-based selection of likelihood models for phylogeny estimation. Syst Biol 52:674-674.
26. Miyawaki H. 1991. Protoparmelia badia in Japan. Hikobia 11:29-32.
27. Persoh D, Rambold G. 2002. Phacopsis - a lichenicolous genus of the family Parmeliaceae. Mycol Prog 1:43-55.
28. _, Beck A, Rambold G. 2004. The distribution of ascus types and photobiontal selection in Lecanoromycetes (Ascomycota) against the background of a revised SSU nrDNA phylogeny. Mycol Prog 3:103-121.
29. Poelt P. 1958. Die lobaten Arten der Flechtengattung Lecanora Ach. sensu ampl. In der Holarctis. Mitteil Bot Staatssammlung München 2:411-589.
30. Reeb V, Lutzoni F, Roux C. 2004. Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory. Mol Phylog Evol 32:1036-1060.
31. Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
32. Stamatakis A, Ludwig T, Meier H. 2005. RAxML III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21:456-463.
33. Thell A, Feuerer T, Kärnefelt I, Myllys L, Stenroos S. 2004. Monophyletic groups within the Parmeliaceae identified. Mycol Prog 3:297-314.
34. _, Mattsson J-E, Kärnefelt I. 1995. Lecanoralean ascus types in the lichenized families Alectoriaceae and Parmeliaceae. Crypt Bot 5:120-127.
35. _, Stenroos S, Feuerer T, Kärnefelt I, Myllys L, Hyvönen J. 2002. Phylogeny of cetrarioid lichens (Parmeliaceae) inferred from ITS and β-tubulin sequences, morphology, anatomy and secondary chemistry. Mycol Prog 1:335-354.
36. Timdal E. 1990. Gypsoplacaceae and Gypsoplaca, a new family and genus of squamiform lichens. In: Jahns HM, ed. Contributions to Lichenology in honor of A. Henssen Bib Lich 38:419-427.
37. Wedin M, Döring H, Mattsson JE. 1999. A multigene study of the phylogenetic relationships of the Parmeliaceae (Lecanorales, lichenized Ascomycota). Mycol Res 103: 1185-1192.
38. _, Ekman S. 2000. Molecular phylogeny of the lichen families Cladoniaceae, Sphaerophoraceae, and Stereocaulaceae (Lecanorales, Ascomycotina). Lichenologist 32:171-187.
39. _, Baloch E, Grube M. 2002. Parsimony analyses of mtSSU and nITS rDNA sequences reveal the natural relationships of the lichen families Physciaceae and Caliciaceae. Taxon 51:655-660.
40. _, Wiklund E, Crewe A, Döring H, Ekman S, Nyberg Å, Schmitt I, Lumbsch HT. 2005. Phylogenetic relationships of Lecanoromycetes (Ascomycota) as revealed by analyses of mtSSU and nLSU rDNA sequence data. Mycol Res 109:1-14.
41. Wiklund E, Wedin M. 2003. The phylogenetic relationship of the cyanobacterial lichens in the Lecanorales suborder Peltigerineae. Cladistics 19:419-431.