메뉴 건너뛰기




Volumn 36, Issue 1, 2004, Pages 27-35

Phylogeny of the Micareaceae inferred from nrSSU DNA sequences

Author keywords

Bayesian inference; Expected likelihood weights; Lecanorales; Maximum likelihood; Maximum parsimony; MCMC; Micarea; Micareaceae; Phylogeny; Pilocarpaceae

Indexed keywords

BYSSOLOMA; FUNGI; LECANORALES; MICAREA; MICAREACEAE; MYXOGASTRIA; PILOCARPACEAE; PSILOLECHIA; RAMALINACEAE; SCOLICIOSPORUM;

EID: 2442551010     PISSN: 00242829     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0024282904013507     Document Type: Article
Times cited : (19)

References (37)
  • 1
    • 0037329391 scopus 로고    scopus 로고
    • Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence
    • Alfaro, M. E., Zoller, S. & Lutzoni, F. (2003) Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution 20: 355-266.
    • (2003) Molecular Biology and Evolution , vol.20 , pp. 355-1266
    • Alfaro, M.E.1    Zoller, S.2    Lutzoni, F.3
  • 3
    • 0001950536 scopus 로고
    • Micarea Fr. (1825)
    • O. W. Purvis, B. J. Coppins, D. L. Hawksworth, P. W. James & D. M. Moore, eds: London: Natural History Museum Publications
    • Coppins, B. J. (1992) Micarea Fr. (1825). In The Lichen Flora of Great Britain and Ireland (O. W. Purvis, B. J. Coppins, D. L. Hawksworth, P. W. James & D. M. Moore, eds): 371-384. London: Natural History Museum Publications.
    • (1992) The Lichen Flora of Great Britain and Ireland , pp. 371-384
    • Coppins, B.J.1
  • 4
    • 0032727172 scopus 로고    scopus 로고
    • Two new species of Micarea from South Africa
    • Coppins, B. J. (1999) Two new species of Micarea from South Africa. Lichenologist 31: 559-565.
    • (1999) Lichenologist , vol.31 , pp. 559-565
    • Coppins, B.J.1
  • 5
    • 0035700091 scopus 로고    scopus 로고
    • Micarea neostipitata, a new species with pale stipitate pycnidia from eastern North America
    • Coppins, B. J. & May, P. F. (2001) Micarea neostipitata, a new species with pale stipitate pycnidia from eastern North America. Lichenologist 33: 487-490.
    • (2001) Lichenologist , vol.33 , pp. 487-490
    • Coppins, B.J.1    May, P.F.2
  • 7
    • 0034961505 scopus 로고    scopus 로고
    • A new xanthone-containing Micarea from Northwest Europe and the Pacific Northwest of North America
    • Coppins, B. J. & Tønsberg, T. (2001) A new xanthone-containing Micarea from Northwest Europe and the Pacific Northwest of North America. Lichenologist 33: 93-96.
    • (2001) Lichenologist , vol.33 , pp. 93-96
    • Coppins, B.J.1    Tønsberg, T.2
  • 9
    • 0034083796 scopus 로고    scopus 로고
    • The phylogeny of the families Lecanoraceae and Bacidiaceae (lichenized Ascomycota) inferred from nuclear SSU rDNA sequences
    • Ekman, S. & Wedin, M. (2000) The phylogeny of the families Lecanoraceae and Bacidiaceae (lichenized Ascomycota) inferred from nuclear SSU rDNA sequences. Plant Biology 2: 350-360.
    • (2000) Plant Biology , vol.2 , pp. 350-360
    • Ekman, S.1    Wedin, M.2
  • 14
    • 0030451574 scopus 로고    scopus 로고
    • A nomenclature for fungal PCR primers with examples from intron-containing SSU rDNA
    • Gargas, A. & DePriest, P. T. (1996) A nomenclature for fungal PCR primers with examples from intron-containing SSU rDNA. Mycologia 88: 745-748.
    • (1996) Mycologia , vol.88 , pp. 745-748
    • Gargas, A.1    DePriest, P.T.2
  • 15
    • 0000746714 scopus 로고
    • Studien in Richtung einer natürlicheren Gliederung der Sammelfamilien Lecanoraceae und Lecideaceae
    • Hafellner, J. (1984) Studien in Richtung einer natürlicheren Gliederung der Sammelfamilien Lecanoraceae und Lecideaceae. Beiheft zur Nova Hedwigia 79: 241-371.
    • (1984) Beiheft zur Nova Hedwigia , vol.79 , pp. 241-371
    • Hafellner, J.1
  • 16
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis, D. M. & Bull, J. J. (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42: 182-192.
    • (1993) Systematic Biology , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 18
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J. P. & Ronquist, F. (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 19
    • 0036395692 scopus 로고    scopus 로고
    • Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): Among and within order relationships based on nuclear ribosomal RNA small and large subunits
    • Kauff, F. & Lutzoni, F. (2002) Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits. Molecular Phylogenetics and Evolution 25: 138-156.
    • (2002) Molecular Phylogenetics and Evolution , vol.25 , pp. 138-156
    • Kauff, F.1    Lutzoni, F.2
  • 20
    • 0035927638 scopus 로고    scopus 로고
    • Major fungal lineages are derived from lichen symbiotic ancestors
    • Lutzoni, F., Pagel, M. & Reeb, V. (2001) Major fungal lineages are derived from lichen symbiotic ancestors. Nature 411: 973-940.
    • (2001) Nature , vol.411 , pp. 973-1940
    • Lutzoni, F.1    Pagel, M.2    Reeb, V.3
  • 21
    • 0002604396 scopus 로고
    • Classification
    • V. Ahmadjian & M. E. Hale, eds.: New York: Academic Press
    • Poelt, J. (1973) Classification. In The Lichens (V. Ahmadjian & M. E. Hale, eds.): 627. New York: Academic Press.
    • (1973) The Lichens , pp. 627
    • Poelt, J.1
  • 22
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada, D. & Crandall, K. A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 24
    • 0036095568 scopus 로고    scopus 로고
    • Retortamonad flagellates are closely related to diplomonads - Implications for the history of mitochondrial function in eukaryote evolution
    • Silberman, J. D., Simpson, A. G. B., Kulda, J., Cepicka, I., Hampl, V., Johnson, P. J. & Roger, A. J. (2002) Retortamonad flagellates are closely related to diplomonads - implications for the history of mitochondrial function in eukaryote evolution. Molecular Biology and Evolution 19: 777-786.
    • (2002) Molecular Biology and Evolution , vol.19 , pp. 777-786
    • Silberman, J.D.1    Simpson, A.G.B.2    Kulda, J.3    Cepicka, I.4    Hampl, V.5    Johnson, P.J.6    Roger, A.J.7
  • 26
  • 30
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura, K. & Nei, M. (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10: 512-526.
    • (1993) Molecular Biology and Evolution , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 31
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24: 4876-4882.
    • (1997) Nucleic Acids Research , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 32
    • 0034954785 scopus 로고    scopus 로고
    • Micarea viridileprosa sp. nov., an overlooked species from Western Europe
    • van den Boom, P. P. G. & Coppins, B. J. (2001) Micarea viridileprosa sp. nov., an overlooked species from Western Europe. Lichenologist 33: 87-91.
    • (2001) Lichenologist , vol.33 , pp. 87-91
    • Van Den Boom, P.P.G.1    Coppins, B.J.2
  • 34
    • 0034043516 scopus 로고    scopus 로고
    • Small subunit rDNA phylogeny shows the lichen families Caliciaceae and Physciaceae (Lecanorales, Ascomycotina) to form a monophyletic group
    • Wedin, M., Döring, H., Nordin, A. & Tibell, L. (2000) Small subunit rDNA phylogeny shows the lichen families Caliciaceae and Physciaceae (Lecanorales, Ascomycotina) to form a monophyletic group. Canadian Journal of Botany 78: 246-254.
    • (2000) Canadian Journal of Botany , vol.78 , pp. 246-254
    • Wedin, M.1    Döring, H.2    Nordin, A.3    Tibell, L.4
  • 35
    • 0036431235 scopus 로고    scopus 로고
    • Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support
    • Wilcox, T. P., Zwickl, D. J., Heath, T. A. & Hillis, D. M. (2002) Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Molecular Phylogenetics and Evolution 25: 361-371.
    • (2002) Molecular Phylogenetics and Evolution , vol.25 , pp. 361-371
    • Wilcox, T.P.1    Zwickl, D.J.2    Heath, T.A.3    Hillis, D.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.