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Volumn 292, Issue 5, 2007, Pages

Mass spectrometric identification of phosphorylation sites of rRNA transcription factor upstream binding factor

Author keywords

Immobilized metal affinity chromatography; Mass spectrometry; RNA polymerase I; TBP; UBF

Indexed keywords

RIBOSOME RNA; SERINE; TRANSCRIPTION FACTOR; DNA DIRECTED RNA POLYMERASE; RECOMBINANT PROTEIN; TRANSCRIPTION FACTOR UBF; TRANSCRIPTION INITIATION FACTOR TIF IB; TRANSCRIPTION INITIATION FACTOR TIF-IB; UNCLASSIFIED DRUG;

EID: 34250676109     PISSN: 03636143     EISSN: 15221563     Source Type: Journal    
DOI: 10.1152/ajpcell.00176.2006     Document Type: Article
Times cited : (9)

References (40)
  • 1
    • 0023805497 scopus 로고
    • Functional cooperativity between transcription factors UBF1 and SL1 mediates human ribosomal RNA synthesis
    • Bell SP, Learned RM, Jantzen HM, Tjian R. Functional cooperativity between transcription factors UBF1 and SL1 mediates human ribosomal RNA synthesis. Science 241: 1192-1197, 1988.
    • (1988) Science , vol.241 , pp. 1192-1197
    • Bell, S.P.1    Learned, R.M.2    Jantzen, H.M.3    Tjian, R.4
  • 3
    • 0035795422 scopus 로고    scopus 로고
    • Nucleolar components involved in ribosome biogenesis cycle between the nucleolus and nucleoplasm in interphase cells
    • Chen D, Huang S. Nucleolar components involved in ribosome biogenesis cycle between the nucleolus and nucleoplasm in interphase cells. J Cell Biol 153: 169-176, 2001.
    • (2001) J Cell Biol , vol.153 , pp. 169-176
    • Chen, D.1    Huang, S.2
  • 4
    • 0018110116 scopus 로고
    • Prediction of the secondary structure of proteins from their amino acid sequence
    • Chou PY, Fasman GD. Prediction of the secondary structure of proteins from their amino acid sequence. Adv Enzymol Relat Areas Mol Biol 47: 45-148, 1978.
    • (1978) Adv Enzymol Relat Areas Mol Biol , vol.47 , pp. 45-148
    • Chou, P.Y.1    Fasman, G.D.2
  • 6
    • 0032237775 scopus 로고    scopus 로고
    • Fragmentation of phosphopeptides in an ion trap mass spectrometer
    • DeGnore JP, Qin J. Fragmentation of phosphopeptides in an ion trap mass spectrometer. J Am Soc Mass Spectrometry 9: 1175-1188, 1998.
    • (1998) J Am Soc Mass Spectrometry , vol.9 , pp. 1175-1188
    • DeGnore, J.P.1    Qin, J.2
  • 7
    • 3042647602 scopus 로고    scopus 로고
    • Control of cell size through phosphorylation of upstream binding factor 1 by nuclear phosphatidylinositol 3-kinase
    • Drakas R, Tu X, Baserga R. Control of cell size through phosphorylation of upstream binding factor 1 by nuclear phosphatidylinositol 3-kinase. Proc Natl Acad Sci USA 101: 9272-9276, 2004.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 9272-9276
    • Drakas, R.1    Tu, X.2    Baserga, R.3
  • 9
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng JK, McCormack AL, Yates III. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrometry 5: 976-989, 1994.
    • (1994) J Am Soc Mass Spectrometry , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates III3
  • 11
    • 0023916169 scopus 로고
    • Angiotensin II induces hypertrophy, not hyperplasia, of cultured rat aortic smooth muscle cells
    • Geisterfer AAT, Peach Michael J, Owens GK. Angiotensin II induces hypertrophy, not hyperplasia, of cultured rat aortic smooth muscle cells. Circ Res 62: 749-756, 1988.
    • (1988) Circ Res , vol.62 , pp. 749-756
    • Geisterfer, A.A.T.1    Peach Michael, J.2    Owens, G.K.3
  • 12
    • 0033557150 scopus 로고    scopus 로고
    • Cellular regulation of ribosomal DNA transcription: Both rat and Xenopus UBF1 stimulate rDNA transcription in 3T3 fibroblasts
    • Hannan R, Stefanovsky V, Arino T, Rothblum L, Moss T. Cellular regulation of ribosomal DNA transcription: both rat and Xenopus UBF1 stimulate rDNA transcription in 3T3 fibroblasts. Nucleic Acids Res 27: 1205-1213, 1999.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1205-1213
    • Hannan, R.1    Stefanovsky, V.2    Arino, T.3    Rothblum, L.4    Moss, T.5
  • 13
    • 0028810245 scopus 로고
    • Angiotensin II-induced hypertrophy of rat vascular smooth muscle is associated with increased 18 S rRNA synthesis and phosphorylation of the rRNA transcription factor, upstream binding factor
    • Hershey JC, Hautmann M, Thompson MM, Rothblum LI, Haystead TAJ, Owens GK. Angiotensin II-induced hypertrophy of rat vascular smooth muscle is associated with increased 18 S rRNA synthesis and phosphorylation of the rRNA transcription factor, upstream binding factor. J Biol Chem 270: 25096-25101, 1995.
    • (1995) J Biol Chem , vol.270 , pp. 25096-25101
    • Hershey, J.C.1    Hautmann, M.2    Thompson, M.M.3    Rothblum, L.I.4    Haystead, T.A.J.5    Owens, G.K.6
  • 16
    • 0027651179 scopus 로고
    • The use of baculoviruses as expression vectors
    • Kidd IM, Emery VC. The use of baculoviruses as expression vectors. Appl Biochem Biotechnol 42: 137-159, 1993.
    • (1993) Appl Biochem Biotechnol , vol.42 , pp. 137-159
    • Kidd, I.M.1    Emery, V.C.2
  • 17
    • 0032442607 scopus 로고    scopus 로고
    • Phosphorylation of the rRNA transcription factor upstream binding factor promotes its association with TATA binding protein
    • Kihm AJ, Hershey JC, Haystead TAJ, Madsen CS, Owens GK. Phosphorylation of the rRNA transcription factor upstream binding factor promotes its association with TATA binding protein. Proc Natl Acad Sci USA 95: 14816-14820, 1998.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14816-14820
    • Kihm, A.J.1    Hershey, J.C.2    Haystead, T.A.J.3    Madsen, C.S.4    Owens, G.K.5
  • 18
    • 0022472581 scopus 로고
    • Human rRNA transcription is modulated by the coordinate binding of two factors to an upstream control element
    • Learned RM, Learned TK, Haltiner MM, Tjian RT. Human rRNA transcription is modulated by the coordinate binding of two factors to an upstream control element. Cell 45: 847-857, 1986.
    • (1986) Cell , vol.45 , pp. 847-857
    • Learned, R.M.1    Learned, T.K.2    Haltiner, M.M.3    Tjian, R.T.4
  • 19
    • 0026757350 scopus 로고
    • Mouse rRNA gene transcription factor mUBF requires both HMG-box1 and an acidic tail for nucleolar accumulation: Molecular analysis of the nucleolar targeting mechanism
    • Maeda Y, Hisatake K, Kondo T, Hanada K, Song CZ, Nishimura T, Muramatsu M. Mouse rRNA gene transcription factor mUBF requires both HMG-box1 and an acidic tail for nucleolar accumulation: molecular analysis of the nucleolar targeting mechanism. EMBO J 11: 3695-3704, 1992.
    • (1992) EMBO J , vol.11 , pp. 3695-3704
    • Maeda, Y.1    Hisatake, K.2    Kondo, T.3    Hanada, K.4    Song, C.Z.5    Nishimura, T.6    Muramatsu, M.7
  • 20
    • 0023050642 scopus 로고
    • The purification of eukaryotic polypeptides synthesized in Escherichia coli
    • Marston FA. The purification of eukaryotic polypeptides synthesized in Escherichia coli. Biochem J 240: 1-12, 1986.
    • (1986) Biochem J , vol.240 , pp. 1-12
    • Marston, F.A.1
  • 21
    • 0034665968 scopus 로고    scopus 로고
    • Subfemtomole MS and MS/MS peptide sequence analysis using nano-HPLC micro-ESI fourier transform ion cyclotron resonance mass spectrometry
    • Martin SE, Shabanowitz J, Hunt DF, Marto JA. Subfemtomole MS and MS/MS peptide sequence analysis using nano-HPLC micro-ESI fourier transform ion cyclotron resonance mass spectrometry. Anal Chem 72: 4266-4274, 2000.
    • (2000) Anal Chem , vol.72 , pp. 4266-4274
    • Martin, S.E.1    Shabanowitz, J.2    Hunt, D.F.3    Marto, J.A.4
  • 22
    • 43949166278 scopus 로고
    • Electrospray ionization mass spectrometry of phosphopeptides isolated by on-line immobilized metal-ion affinity chromatography
    • Nuwaysir L, Stults J. Electrospray ionization mass spectrometry of phosphopeptides isolated by on-line immobilized metal-ion affinity chromatography. J Am Soc Mass Spectrom 4: 662-669, 1993.
    • (1993) J Am Soc Mass Spectrom , vol.4 , pp. 662-669
    • Nuwaysir, L.1    Stults, J.2
  • 23
    • 0026502471 scopus 로고
    • Differential phosphorylation and localization of the transcription factor UBF in vivo in response to serum deprivation. In vitro dephosphorylation of UBF reduces its transactivation properties
    • O'Mahony DJ, Xie WQ, Smith SD, Singer HA, Rothblum LI. Differential phosphorylation and localization of the transcription factor UBF in vivo in response to serum deprivation. In vitro dephosphorylation of UBF reduces its transactivation properties. J Biol Chem 267: 35-38, 1992.
    • (1992) J Biol Chem , vol.267 , pp. 35-38
    • O'Mahony, D.J.1    Xie, W.Q.2    Smith, S.D.3    Singer, H.A.4    Rothblum, L.I.5
  • 25
    • 0026910385 scopus 로고
    • Immobilized metal ion affinity chromatography
    • Porath J. Immobilized metal ion affinity chromatography. Protein Expr Purif 3: 263-281, 1992.
    • (1992) Protein Expr Purif , vol.3 , pp. 263-281
    • Porath, J.1
  • 26
    • 0033565503 scopus 로고    scopus 로고
    • Immobilized gallium (III) affinity chromatography of phosphopeptides
    • Posewitz MC, Tempst P. Immobilized gallium (III) affinity chromatography of phosphopeptides. Anal Chem 71: 2883-2892, 1999.
    • (1999) Anal Chem , vol.71 , pp. 2883-2892
    • Posewitz, M.C.1    Tempst, P.2
  • 27
    • 0027914440 scopus 로고
    • Protein structure prediction
    • Robson B, Garnier J. Protein structure prediction. Nature 361: 506, 1993.
    • (1993) Nature , vol.361 , pp. 506
    • Robson, B.1    Garnier, J.2
  • 28
    • 0036844024 scopus 로고    scopus 로고
    • The nucleolar remodeling complex NoRC mediates heterochromatin formation and silencing of ribosomal gene transcription
    • Santoro R, Li J, Grummt I. The nucleolar remodeling complex NoRC mediates heterochromatin formation and silencing of ribosomal gene transcription. Nat Genet 32: 393-396, 2002.
    • (2002) Nat Genet , vol.32 , pp. 393-396
    • Santoro, R.1    Li, J.2    Grummt, I.3
  • 29
    • 0025924292 scopus 로고
    • 3+ affinity chromatographic isolation of phosphopeptides
    • 3+ affinity chromatographic isolation of phosphopeptides. J Chromatogr A 539: 425-432, 1991.
    • (1991) J Chromatogr A , vol.539 , pp. 425-432
    • Scanff, P.1    Yvon, M.2    Pelissier, J.P.3
  • 30
    • 0026342910 scopus 로고
    • Transcription complex formation at the mouse rDNA promoter involves the stepwise association of four transcription factors and RNA polymerase I
    • Schnapp A, Grummt I. Transcription complex formation at the mouse rDNA promoter involves the stepwise association of four transcription factors and RNA polymerase I. J Biol Chem 266: 24588-24595, 1991.
    • (1991) J Biol Chem , vol.266 , pp. 24588-24595
    • Schnapp, A.1    Grummt, I.2
  • 31
    • 0021010433 scopus 로고
    • Production of human beta interferon in insect cells infected with a baculovirus expression vector
    • Smith GE, Summers MD, Fraser MJ. Production of human beta interferon in insect cells infected with a baculovirus expression vector. Mol Cell Biol 3: 2156-2165, 1983.
    • (1983) Mol Cell Biol , vol.3 , pp. 2156-2165
    • Smith, G.E.1    Summers, M.D.2    Fraser, M.J.3
  • 32
    • 0035930330 scopus 로고    scopus 로고
    • An immediate response of ribosomal transcription to growth factor stimulation in mammals is mediated by ERK phosphorylation of UBF
    • Stefanovsky VY, Pelletier G, Hannan R, Gagnon-Kugler T, Rothblum LI, Moss T. An immediate response of ribosomal transcription to growth factor stimulation in mammals is mediated by ERK phosphorylation of UBF. Mol Cell 8: 1063-1073, 2001.
    • (2001) Mol Cell , vol.8 , pp. 1063-1073
    • Stefanovsky, V.Y.1    Pelletier, G.2    Hannan, R.3    Gagnon-Kugler, T.4    Rothblum, L.I.5    Moss, T.6
  • 33
    • 0032936298 scopus 로고    scopus 로고
    • Recruitment of TATA-binding protein-TAFI complex SL1 to the human ribosomal DNA promoter is mediated by the carboxy-terminal activation domain of upstream binding factor (UBF) and is regulated by UBF phosphorylation
    • Tuan JC, Zhai W, Comai L. Recruitment of TATA-binding protein-TAFI complex SL1 to the human ribosomal DNA promoter is mediated by the carboxy-terminal activation domain of upstream binding factor (UBF) and is regulated by UBF phosphorylation. Mol Cell Biol 19: 2872-2879, 1999.
    • (1999) Mol Cell Biol , vol.19 , pp. 2872-2879
    • Tuan, J.C.1    Zhai, W.2    Comai, L.3
  • 34
    • 0035923591 scopus 로고    scopus 로고
    • Phosphorylation of UBF at serine 388 is required for interaction with RNA polymerase I and activation of rDNA transcription
    • Voit R, Grummt I. Phosphorylation of UBF at serine 388 is required for interaction with RNA polymerase I and activation of rDNA transcription. Proc Natl Acad Sci USA 98: 13631-13636, 2001.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 13631-13636
    • Voit, R.1    Grummt, I.2
  • 35
    • 0029094210 scopus 로고
    • Activation of mammalian ribosomal gene transcription requires phosphorylation of the nucleolar transcription factor UBF
    • Voit R, Kuhn A, Sander EE, Grummt I. Activation of mammalian ribosomal gene transcription requires phosphorylation of the nucleolar transcription factor UBF. Nucleic Acids Res 23: 2593-2599, 1995.
    • (1995) Nucleic Acids Res , vol.23 , pp. 2593-2599
    • Voit, R.1    Kuhn, A.2    Sander, E.E.3    Grummt, I.4
  • 36
    • 0026591023 scopus 로고
    • The nucleolar transcription factor mUBF is phosphorylated by casein kinase II in the C-terminal hyperacidic tail which is essential for transactivation
    • Voit R, Schnapp A, Kuhn A, Rosenbauer H, Hirschmann P, Stunnenberg HG, Grummt I. The nucleolar transcription factor mUBF is phosphorylated by casein kinase II in the C-terminal hyperacidic tail which is essential for transactivation. EMBO J 11: 2211-2218, 1992.
    • (1992) EMBO J , vol.11 , pp. 2211-2218
    • Voit, R.1    Schnapp, A.2    Kuhn, A.3    Rosenbauer, H.4    Hirschmann, P.5    Stunnenberg, H.G.6    Grummt, I.7
  • 37
    • 0033118941 scopus 로고    scopus 로고
    • Phosphorylation by G1-specific cdk-cyclin complexes activates the nucleolar transcription factor UBF
    • Voit R, Hoffman M, Grummt I. Phosphorylation by G1-specific cdk-cyclin complexes activates the nucleolar transcription factor UBF. EMBO J 18: 1891-1899, 1999.
    • (1999) EMBO J , vol.18 , pp. 1891-1899
    • Voit, R.1    Hoffman, M.2    Grummt, I.3
  • 38
    • 0028062116 scopus 로고
    • Identification by electrospray ionization mass spectrometry of the sites of tyrosine phosphorylation induced in activated Jurkat T cells on the protein tyrosine kinase ZAP-70
    • Watts JD, Affolter M, Krebs DL, Wange RL, Samelson LE, Aebersold R. Identification by electrospray ionization mass spectrometry of the sites of tyrosine phosphorylation induced in activated Jurkat T cells on the protein tyrosine kinase ZAP-70. J Biol Chem 269: 29520-29529, 1994.
    • (1994) J Biol Chem , vol.269 , pp. 29520-29529
    • Watts, J.D.1    Affolter, M.2    Krebs, D.L.3    Wange, R.L.4    Samelson, L.E.5    Aebersold, R.6
  • 39
    • 0034684676 scopus 로고    scopus 로고
    • Phosphorylated peptides are naturally processed and presented by major histocompatibility complex class I molecules in vivo
    • Zarling AL, Ficarro SB, White FM, Shabanowitz J, Hunt DF, Engelhard VH. Phosphorylated peptides are naturally processed and presented by major histocompatibility complex class I molecules in vivo. J Exp Med 192: 1755-1762, 2000.
    • (2000) J Exp Med , vol.192 , pp. 1755-1762
    • Zarling, A.L.1    Ficarro, S.B.2    White, F.M.3    Shabanowitz, J.4    Hunt, D.F.5    Engelhard, V.H.6
  • 40
    • 0032915372 scopus 로고    scopus 로고
    • A kinase activity associated with simian virus 40 large T antigen phosphorylates upstream binding factor (UBF) and promotes formation of a stable initiation complex between UBF and SL1
    • Zhai W, Comai L. A kinase activity associated with simian virus 40 large T antigen phosphorylates upstream binding factor (UBF) and promotes formation of a stable initiation complex between UBF and SL1. Mol Cell Biol 19: 2791-2802, 1999.
    • (1999) Mol Cell Biol , vol.19 , pp. 2791-2802
    • Zhai, W.1    Comai, L.2


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