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Volumn 35, Issue 9, 2007, Pages

An adaptation of the LMS method to determine expression variations in profiling data

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ANALYTICAL ERROR; ANIMAL CELL; ARTICLE; CONFIDENCE INTERVAL; CONTROLLED STUDY; DATA ANALYSIS; GENE EXPRESSION PROFILING; GENETIC ALGORITHM; GENETIC DATABASE; GENETIC STABILITY; INTERMETHOD COMPARISON; MATHEMATICAL ANALYSIS; MATHEMATICAL COMPUTING; MATHEMATICAL MODEL; MICROARRAY ANALYSIS; MOUSE; NONHUMAN; PRIORITY JOURNAL; RNA ANALYSIS; SENSITIVITY AND SPECIFICITY; ANIMAL; CELL CLONE; DNA MICROARRAY; EVALUATION; METHODOLOGY; STATISTICAL MODEL;

EID: 34250639083     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm093     Document Type: Article
Times cited : (11)

References (28)
  • 2
    • 0042589211 scopus 로고    scopus 로고
    • A consistency test for determining the significance of gene expression changes on replicate samples and two convenient variance-stabilizing transformation
    • Bethesda, Maryland
    • Munson, P. (2001), A consistency test for determining the significance of gene expression changes on replicate samples and two convenient variance-stabilizing transformation. In Conference Proceedings: GeneLogic Workshop on Low Level Analysis of Affymetrix GeneChip Data, Bethesda, Maryland.
    • (2001) Conference Proceedings: GeneLogic Workshop on Low Level Analysis of Affymetrix GeneChip Data
    • Munson, P.1
  • 3
    • 0012572299 scopus 로고    scopus 로고
    • A variance-stabilizing transformation for gene-expression microarray data
    • Durbin,B.P., Hardin,J.S., Hawkins,D.M. and Rocke,D.M. (2002) A variance-stabilizing transformation for gene-expression microarray data. Bioinformatics, 18(Suppl. 1), S105-S110.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Durbin, B.P.1    Hardin, J.S.2    Hawkins, D.M.3    Rocke, D.M.4
  • 4
    • 0037100176 scopus 로고    scopus 로고
    • Diagnostics for conformity of paired quantitative measurements
    • Hawkins,D.M. (2002) Diagnostics for conformity of paired quantitative measurements. Stat. Med., 21, 1913-1935.
    • (2002) Stat. Med , vol.21 , pp. 1913-1935
    • Hawkins, D.M.1
  • 5
    • 11244346557 scopus 로고    scopus 로고
    • Variance stabilization applied to microarray data calibration and to the quantification of differential expression
    • Huber,W., Von Heydebreck,A., Sultmann,H., Poustka,A. and Vingron,M. (2002) Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics, 18(Suppl. 1), S96-S104.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Huber, W.1    Von Heydebreck, A.2    Sultmann, H.3    Poustka, A.4    Vingron, M.5
  • 6
    • 4244098036 scopus 로고    scopus 로고
    • A new approach for filtering noise from high-density oligonucleotide microarray datasets
    • Mills,J.C. and Gordon,J.I. (2001) A new approach for filtering noise from high-density oligonucleotide microarray datasets. Nucleic Acids Res., 29, E72-72.
    • (2001) Nucleic Acids Res , vol.29
    • Mills, J.C.1    Gordon, J.I.2
  • 8
    • 0026682977 scopus 로고
    • Smoothing reference centile curves: The LMS method and penalized likelihood
    • Cole,T.J. and Green,P.J. (1992) Smoothing reference centile curves: The LMS method and penalized likelihood. Stat. Med., 11, 1305-1319.
    • (1992) Stat. Med , vol.11 , pp. 1305-1319
    • Cole, T.J.1    Green, P.J.2
  • 9
    • 0001065501 scopus 로고
    • Anatomy of transformations
    • Tukey,J.W. (1957) Anatomy of transformations. Ann. Math. Statist., 602-632.
    • (1957) Ann. Math. Statist , pp. 602-632
    • Tukey, J.W.1
  • 10
    • 0000133998 scopus 로고
    • An Analysis of transformations
    • Box,G.E.P. and Cox,D.R. (1964) An Analysis of transformations. J. Roy. Stati. Soc. B, 78, 211-243.
    • (1964) J. Roy. Stati. Soc. B , vol.78 , pp. 211-243
    • Box, G.E.P.1    Cox, D.R.2
  • 11
    • 0025333948 scopus 로고
    • The LMS method for constructing normalized growth standards
    • Cole,T.J. (1990) The LMS method for constructing normalized growth standards. Eur. J. Clin. Nutr., 44, 45-60.
    • (1990) Eur. J. Clin. Nutr , vol.44 , pp. 45-60
    • Cole, T.J.1
  • 13
    • 0004155631 scopus 로고
    • Approximation by spline functions
    • Springer, Berlin
    • Nürnberger, G. (1989) Approximation by spline functions. In Conference Proceedings, Springer, Berlin.
    • (1989) Conference Proceedings
    • Nürnberger, G.1
  • 15
    • 0036935128 scopus 로고    scopus 로고
    • DNA microarrays: A new diagnostic tool and its implications in colorectal cancer
    • Stremmel,C., Wein,A., Hohenberger,W. and Reingruber,B. (2002) DNA microarrays: A new diagnostic tool and its implications in colorectal cancer. Int. J. Colorectal Dis., 17, 131-136.
    • (2002) Int. J. Colorectal Dis , vol.17 , pp. 131-136
    • Stremmel, C.1    Wein, A.2    Hohenberger, W.3    Reingruber, B.4
  • 17
    • 0023872192 scopus 로고
    • Establishment of mouse cell lines which constitutively secrete large quantities of interleukin 2, 3, 4 or 5, using modified cDNA expression vectors
    • Karasuyama,H. and Melchers,F. (1988) Establishment of mouse cell lines which constitutively secrete large quantities of interleukin 2, 3, 4 or 5, using modified cDNA expression vectors. Eur. J. Immunol., 18 97-104.
    • (1988) Eur. J. Immunol , vol.18 , pp. 97-104
    • Karasuyama, H.1    Melchers, F.2
  • 20
    • 0037067779 scopus 로고    scopus 로고
    • Regulation of mRNA expression in macrophages after Yersinia enterocolitica infection. Role of different Yop effectors
    • Sauvonnet,N., Pradet-Balade,B., Garcia-Sanz,J.A. and Cornelis,G.R. (2002) Regulation of mRNA expression in macrophages after Yersinia enterocolitica infection. Role of different Yop effectors. J. Biol. Chem., 277, 25133-25142.
    • (2002) J. Biol. Chem , vol.277 , pp. 25133-25142
    • Sauvonnet, N.1    Pradet-Balade, B.2    Garcia-Sanz, J.A.3    Cornelis, G.R.4
  • 21
    • 0036947892 scopus 로고    scopus 로고
    • Robust estimators for expression analysis
    • Hubbell,E., Liu,W.M. and Mei,R. (2002) Robust estimators for expression analysis. Bioinformatics, 18, 1585-1592.
    • (2002) Bioinformatics , vol.18 , pp. 1585-1592
    • Hubbell, E.1    Liu, W.M.2    Mei, R.3
  • 24
    • 0041561121 scopus 로고    scopus 로고
    • Statistical combining of cell expression profiles.
    • US Patent, 6, 351-712
    • Stoughton, R. and Dai, H. (2002) Statistical combining of cell expression profiles. US Patent, 6, 351-712.
    • (2002)
    • Stoughton, R.1    Dai, H.2
  • 26
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
    • Li,C. and Wong,W.H. (2001) Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proc. Natl. Acad. Sci. USA, 98, 31-36.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 27
    • 0042889117 scopus 로고    scopus 로고
    • A comparison of statistical methods for analysis of high density oligonucleotide array data
    • Rajagopalan,D. (2003) A comparison of statistical methods for analysis of high density oligonucleotide array data. Bioinformatics, 19 1469-1476.
    • (2003) Bioinformatics , vol.19 , pp. 1469-1476
    • Rajagopalan, D.1
  • 28
    • 0000796121 scopus 로고
    • Approximate regression models and splines
    • Eubank,R.L. (1984) Approximate regression models and splines. Comm. Statist. Theor. Methods, 13, 433-484.
    • (1984) Comm. Statist. Theor. Methods , vol.13 , pp. 433-484
    • Eubank, R.L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.